View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_120 (Length: 243)

Name: NF4445_low_120
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_120
NF4445_low_120
[»] chr3 (2 HSPs)
chr3 (1-243)||(51733043-51733285)
chr3 (103-164)||(18268002-18268063)
[»] chr6 (2 HSPs)
chr6 (70-130)||(4323900-4323960)
chr6 (91-174)||(7936883-7936964)
[»] chr7 (2 HSPs)
chr7 (100-155)||(9483382-9483437)
chr7 (93-138)||(31924417-31924462)
[»] chr5 (3 HSPs)
chr5 (120-167)||(28452602-28452649)
chr5 (70-125)||(41542507-41542562)
chr5 (117-165)||(19625927-19625975)
[»] chr4 (1 HSPs)
chr4 (86-164)||(22402367-22402446)
[»] chr1 (1 HSPs)
chr1 (70-126)||(17831566-17831622)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 51733043 - 51733285
Alignment:
Q  1 gcacagatgcgggtgagctatcaacttgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51733043 gcacagatgcgggtgagctatcaacatgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt 51733142  T
Q  101 tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatacggcctattgatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51733143 tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatatggcctattgatg 51733242  T
Q  201 aatcaattcttttttgcagattaacggccgttcaattcaagac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51733243 aatcaattcttttttgcagattaacggccgttcaattcaagac 51733285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 18268063 - 18268002
Alignment:
Q  103 acaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgt 164  Q
    |||| |||||||| ||||||||||  | ||||||||||| | || |||||||||||||||||    
T  18268063 acactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgt 18268002  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 4323960 - 4323900
Alignment:
Q  70 gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaatagaa 130  Q
    ||||| ||||||||| |||||||||||| ||||||| ||||||||| || |||||||||||    
T  4323960 gacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaatagaa 4323900  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 7936883 - 7936964
Alignment:
Q  91 actgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 174  Q
    ||||||| ||||||||||  |||||  ||||||||||||||||||||| || | || ||||||||||||  |||| ||||||||    
T  7936883 actgacatgttgacaccggcaataa--tgagaaaatagaataattgaatgtcagcacatgtgtcggtgtcatgtcagtgctaca 7936964  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9483382 - 9483437
Alignment:
Q  100 ttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcg 155  Q
    |||||||| ||||||| |||||||||||||||||||||| || |||| ||||||||    
T  9483382 ttgacaccaataataatttgagaaaatagaataattgaatgtaaccatatgtgtcg 9483437  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 31924417 - 31924462
Alignment:
Q  93 tgacaggttgacaccgataataacttgagaaaatagaataattgaa 138  Q
    ||||| ||||||||||||||||| || ||||||||||| |||||||    
T  31924417 tgacacgttgacaccgataataatttaagaaaatagaacaattgaa 31924462  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 28452602 - 28452649
Alignment:
Q  120 agaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcgg 167  Q
    |||||||| |||||||||| ||||||| |||||| |||||||||||||    
T  28452602 agaaaataaaataattgaatgttaccacatgtgttggtgttgtgtcgg 28452649  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 41542562 - 41542507
Alignment:
Q  70 gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaa 125  Q
    ||||| |||||||  || |||||||||| ||||||||||||||||| |||||||||    
T  41542562 gacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa 41542507  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 19625975 - 19625927
Alignment:
Q  117 ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtc 165  Q
    |||||||||| ||||||||||| || |||| ||||||| ||||||||||    
T  19625975 ttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgtc 19625927  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 22402367 - 22402446
Alignment:
Q  86 acgatactgacaggttgacaccgataataacttgagaaaatagaa-taattgaacgttaccagatgtgtcggtgttgtgt 164  Q
    |||||||||||| || || |||| |||||| |||||||||||||| | |||||| || |||| |||||||||||| ||||    
T  22402367 acgatactgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgt 22402446  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17831622 - 17831566
Alignment:
Q  70 gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaat 126  Q
    ||||||||||||| |||||| ||||||| |  ||||||| |||||| ||||||||||    
T  17831622 gacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaat 17831566  T

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