View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_125 (Length: 240)
Name: NF4445_low_125
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51421195 - 51420974
Alignment:
| Q |
1 |
ttgctccaaatctgaaatccacttcatatataataatgaacaatcaaaaccatgatcaatgttttcgattgggattaatacattgcagcaaagaaaataa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
51421195 |
ttgctccaaatctgatatccacttcatatataataataaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataa |
51421096 |
T |
|
| Q |
101 |
aataaggatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51421095 |
aataaggatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatg |
51420996 |
T |
|
| Q |
201 |
aatgaaagagatggtagtggaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
51420995 |
aatgaaagagatggtagtggaa |
51420974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38931842 - 38932063
Alignment:
| Q |
1 |
ttgctccaaatctgaaatccacttcatatataataatgaacaatcaaaaccatgatcaatgttttcgattgggattaatacattgcagcaaagaaaataa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
38931842 |
ttgctccaaatctgatatccacttcatatataataataaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataa |
38931941 |
T |
|
| Q |
101 |
aataaggatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatg |
200 |
Q |
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| T |
38931942 |
aataaggatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatg |
38932041 |
T |
|
| Q |
201 |
aatgaaagagatggtagtggaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38932042 |
aatgaaagagatggtagtggaa |
38932063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37562831 - 37562937
Alignment:
| Q |
1 |
ttgctccaaatctgaaatccacttcatatataataatgaacaatcaaaaccatgatcaatgttttcgattgggattaatacattgcagcaaagaaaataa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
37562831 |
ttgctccaaatctgatatccacttcatatataataatgaacaatcaaaatcatgagcaatattttggattgggattaatacattgcagcaaagaaaataa |
37562930 |
T |
|
| Q |
101 |
aataagg |
107 |
Q |
| |
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||||||| |
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|
| T |
37562931 |
aataagg |
37562937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 37562938 - 37562989
Alignment:
| Q |
165 |
tttgatgagttgctggttatgggtttgtggaggatgaatgaaagagatggta |
216 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37562938 |
tttgatgagtcgctggttaggggtttgtggaggatgaatgaaagagatggta |
37562989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 13934955 - 13934988
Alignment:
| Q |
189 |
ttgtggaggatgaatgaaagagatggtagtggaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
13934955 |
ttgtggaggatgaatgaaagagatggtagtggaa |
13934988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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