View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_135 (Length: 236)
Name: NF4445_low_135
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_135 |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 41737402 - 41737559
Alignment:
| Q |
11 |
gcaatgctaggactggtgtacccgataatagatgtgtattcaaatcacaggagatagtaatcggcattatgcttatgttggtgacaattttgttgcagta |
110 |
Q |
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| T |
41737402 |
gcaatgctaggactggtgtacccgataatagatgtgtattcaaatcacaggagatagtaatcggcattatgcttatgttggtgacaattttgttgcagta |
41737501 |
T |
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| Q |
111 |
atnnnnnnnnttctagtatatctttataaagatcagaagtgataaaagccgtaattgt |
168 |
Q |
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| T |
41737502 |
ataaaaaaaattctagtatatctttataaagatcagaagtgataaaagccgtaattgt |
41737559 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 18342906 - 18342813
Alignment:
| Q |
130 |
atctttataaagatcagaagtgataaaagccgtaattgtatgtacttgtaaagaactcgaacatagtaaagttataagaatactgtatgatgat |
223 |
Q |
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| T |
18342906 |
atctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgat |
18342813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 18342999 - 18342928
Alignment:
| Q |
41 |
gatgtgtattcaaatcacaggagatagtaatcggcattatgcttatgttggtgacaattttgttgcagtaat |
112 |
Q |
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| T |
18342999 |
gatgtgtattcgaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaat |
18342928 |
T |
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Target: scaffold1779 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 819 - 868
Alignment:
| Q |
138 |
aaagatcagaagtgataaaagccgtaattgtatgtacttgtaaagaactc |
187 |
Q |
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| T |
819 |
aaagatcagaagtgatcagagctgtaattgtacgtacttgtaaagaactc |
868 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 36840679 - 36840586
Alignment:
| Q |
130 |
atctttataaagatcagaagtgataaaagccgtaattgtatgtacttgtaaagaactcgaacatagtaaagttataagaatactgtatgatgat |
223 |
Q |
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| T |
36840679 |
atctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgat |
36840586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 36840772 - 36840701
Alignment:
| Q |
41 |
gatgtgtattcaaatcacaggagatagtaatcggcattatgcttatgttggtgacaattttgttgcagtaat |
112 |
Q |
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| T |
36840772 |
gatgtgtattcgaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaat |
36840701 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 46699249 - 46699178
Alignment:
| Q |
41 |
gatgtgtattcaaatcacaggagatagtaatcggcattatgcttatgttggtgacaattttgttgcagtaat |
112 |
Q |
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| T |
46699249 |
gatgtgtattcgaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaat |
46699178 |
T |
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