View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_139 (Length: 232)

Name: NF4445_low_139
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_139
NF4445_low_139
[»] scaffold0031 (1 HSPs)
scaffold0031 (19-218)||(112172-112372)
[»] chr5 (43 HSPs)
chr5 (19-218)||(31916276-31916476)
chr5 (19-218)||(4038571-4038771)
chr5 (19-218)||(20763824-20764024)
chr5 (19-218)||(27274772-27274972)
chr5 (19-218)||(34131082-34131270)
chr5 (19-218)||(19888945-19889133)
chr5 (19-218)||(37299406-37299622)
chr5 (19-218)||(37549196-37549412)
chr5 (19-218)||(37651994-37652210)
chr5 (23-202)||(20896432-20896613)
chr5 (85-218)||(42091177-42091311)
chr5 (19-130)||(13572271-13572382)
chr5 (19-130)||(37817151-37817262)
chr5 (19-129)||(30944377-30944487)
chr5 (19-129)||(30953799-30953909)
chr5 (104-218)||(21681003-21681119)
chr5 (23-202)||(20905127-20905309)
chr5 (72-218)||(206121-206270)
chr5 (104-218)||(22173977-22174093)
chr5 (112-218)||(18219909-18220016)
chr5 (120-218)||(13572404-13572503)
chr5 (120-218)||(30944538-30944637)
chr5 (120-218)||(30953960-30954059)
chr5 (120-218)||(8766189-8766288)
chr5 (120-218)||(33938563-33938662)
chr5 (120-218)||(33948963-33949062)
chr5 (155-218)||(18210602-18210666)
chr5 (142-218)||(18389562-18389639)
chr5 (155-218)||(18360562-18360626)
chr5 (160-218)||(21752531-21752590)
chr5 (160-218)||(21761954-21762013)
chr5 (84-128)||(18210451-18210495)
chr5 (84-128)||(18219789-18219833)
chr5 (84-128)||(22173889-22173933)
chr5 (120-174)||(37817075-37817129)
chr5 (19-63)||(18210403-18210447)
chr5 (19-63)||(18219741-18219785)
chr5 (19-63)||(21681263-21681307)
chr5 (19-63)||(22173841-22173885)
chr5 (148-202)||(31104916-31104969)
chr5 (84-128)||(21681215-21681259)
chr5 (145-202)||(23379084-23379140)
chr5 (155-218)||(37817043-37817106)
[»] chr6 (15 HSPs)
chr6 (19-218)||(1595920-1596120)
chr6 (19-218)||(24505796-24505996)
chr6 (19-218)||(16320774-16320974)
chr6 (48-198)||(26161402-26161553)
chr6 (83-202)||(791683-791803)
chr6 (72-218)||(30658582-30658731)
chr6 (19-129)||(26021500-26021610)
chr6 (72-218)||(17823575-17823724)
chr6 (102-218)||(12991027-12991144)
chr6 (102-218)||(26021655-26021772)
chr6 (80-202)||(16923069-16923193)
chr6 (42-129)||(12990911-12990998)
chr6 (120-218)||(16897164-16897263)
chr6 (120-218)||(16907817-16907916)
chr6 (19-78)||(18712668-18712727)
[»] scaffold0809 (1 HSPs)
scaffold0809 (19-218)||(62-262)
[»] chr3 (23 HSPs)
chr3 (19-218)||(13120356-13120556)
chr3 (19-218)||(13113227-13113427)
chr3 (19-218)||(20745461-20745650)
chr3 (72-218)||(51979200-51979348)
chr3 (19-129)||(4783366-4783476)
chr3 (85-218)||(20292619-20292753)
chr3 (19-129)||(18560542-18560652)
chr3 (100-218)||(2490058-2490177)
chr3 (19-130)||(19828629-19828740)
chr3 (120-218)||(18560408-18560507)
chr3 (120-218)||(5656370-5656469)
chr3 (120-218)||(9536392-9536491)
chr3 (120-218)||(9546814-9546913)
chr3 (120-218)||(19828762-19828861)
chr3 (19-129)||(2489957-2490059)
chr3 (91-218)||(24763024-24763153)
chr3 (155-218)||(4783534-4783598)
chr3 (155-218)||(4370495-4370559)
chr3 (155-218)||(4380241-4380305)
chr3 (161-201)||(12376088-12376128)
chr3 (104-152)||(4370550-4370598)
chr3 (104-152)||(4380296-4380344)
chr3 (115-184)||(10508636-10508704)
[»] chr8 (20 HSPs)
chr8 (19-218)||(20531713-20531914)
chr8 (19-218)||(33774526-33774714)
chr8 (19-218)||(31991834-31992023)
chr8 (19-145)||(31999635-31999762)
chr8 (82-218)||(5758867-5759004)
chr8 (19-130)||(14882082-14882193)
chr8 (19-130)||(14894432-14894543)
chr8 (72-218)||(11431105-11431253)
chr8 (19-129)||(13673808-13673918)
chr8 (72-218)||(23015450-23015599)
chr8 (100-218)||(14882219-14882338)
chr8 (102-218)||(14894587-14894704)
chr8 (120-218)||(13673646-13673745)
chr8 (120-218)||(21203567-21203666)
chr8 (120-218)||(21213983-21214082)
chr8 (120-218)||(21333433-21333532)
chr8 (141-218)||(32008313-32008391)
chr8 (155-218)||(9325769-9325833)
chr8 (116-187)||(2690762-2690833)
chr8 (153-202)||(20098322-20098370)
[»] scaffold0553 (1 HSPs)
scaffold0553 (19-218)||(1247-1447)
[»] scaffold0303 (1 HSPs)
scaffold0303 (23-218)||(12269-12465)
[»] chr4 (34 HSPs)
chr4 (19-218)||(16628997-16629197)
chr4 (19-218)||(7847147-7847348)
chr4 (32-218)||(12865823-12866001)
chr4 (72-218)||(53946733-53946881)
chr4 (80-202)||(16211626-16211749)
chr4 (19-129)||(17828891-17829001)
chr4 (19-129)||(17838282-17838392)
chr4 (104-218)||(3488388-3488504)
chr4 (104-218)||(3497655-3497771)
chr4 (120-218)||(3606518-3606617)
chr4 (80-218)||(16472134-16472275)
chr4 (120-218)||(17829052-17829151)
chr4 (120-218)||(17838443-17838542)
chr4 (120-218)||(6691473-6691572)
chr4 (120-218)||(6701879-6701978)
chr4 (120-218)||(16248542-16248641)
chr4 (72-218)||(2829036-2829172)
chr4 (72-174)||(44888263-44888367)
chr4 (155-218)||(5293948-5294012)
chr4 (155-218)||(5303562-5303626)
chr4 (155-218)||(21845451-21845515)
chr4 (155-218)||(21854880-21854944)
chr4 (155-218)||(21901314-21901378)
chr4 (155-218)||(21910743-21910807)
chr4 (155-218)||(27681610-27681674)
chr4 (155-218)||(27691221-27691285)
chr4 (69-129)||(3606423-3606483)
chr4 (104-152)||(21845506-21845554)
chr4 (104-152)||(21854935-21854983)
chr4 (104-152)||(21901369-21901417)
chr4 (104-152)||(21910798-21910846)
chr4 (175-218)||(44888231-44888275)
chr4 (137-202)||(1292860-1292924)
chr4 (161-202)||(11476596-11476636)
[»] chr2 (23 HSPs)
chr2 (19-218)||(573724-573924)
chr2 (19-218)||(22688063-22688263)
chr2 (19-218)||(12570049-12570250)
chr2 (19-218)||(45190313-45190501)
chr2 (19-174)||(16934682-16934837)
chr2 (19-174)||(17005342-17005497)
chr2 (112-218)||(32937883-32937991)
chr2 (120-218)||(9503477-9503576)
chr2 (120-218)||(9514843-9514942)
chr2 (120-218)||(18650507-18650606)
chr2 (120-218)||(18662577-18662676)
chr2 (72-174)||(3606366-3606470)
chr2 (155-218)||(5337893-5337957)
chr2 (155-218)||(5347789-5347853)
chr2 (142-218)||(18660836-18660913)
chr2 (155-218)||(4456312-4456376)
chr2 (155-218)||(4457376-4457440)
chr2 (155-218)||(4467001-4467065)
chr2 (113-202)||(15940198-15940285)
chr2 (137-202)||(24239640-24239704)
chr2 (175-218)||(3606458-3606502)
chr2 (179-218)||(16934829-16934869)
chr2 (179-218)||(17005489-17005529)
[»] chr1 (20 HSPs)
chr1 (19-218)||(20328763-20328963)
chr1 (19-217)||(20318439-20318626)
chr1 (19-218)||(27065564-27065753)
chr1 (19-218)||(26193835-26194023)
chr1 (32-202)||(21821842-21822014)
chr1 (38-147)||(12418375-12418485)
chr1 (19-174)||(22960401-22960557)
chr1 (23-202)||(21782202-21782374)
chr1 (84-218)||(49332820-49332955)
chr1 (19-129)||(25867836-25867946)
chr1 (103-209)||(20311787-20311893)
chr1 (103-218)||(20308298-20308414)
chr1 (19-129)||(20308432-20308534)
chr1 (72-199)||(18097381-18097497)
chr1 (72-159)||(37011536-37011624)
chr1 (19-129)||(20314116-20314218)
chr1 (166-218)||(12418327-12418380)
chr1 (131-174)||(25867775-25867818)
chr1 (155-218)||(25867743-25867806)
chr1 (137-202)||(18062713-18062777)
[»] scaffold1411 (1 HSPs)
scaffold1411 (19-218)||(17-217)
[»] chr7 (25 HSPs)
chr7 (19-218)||(19585240-19585440)
chr7 (19-218)||(27987979-27988179)
chr7 (19-129)||(19799288-19799398)
chr7 (19-129)||(24541218-24541328)
chr7 (19-129)||(45552751-45552861)
chr7 (82-218)||(10415093-10415233)
chr7 (100-218)||(19799170-19799289)
chr7 (120-218)||(5926172-5926271)
chr7 (120-218)||(6533823-6533922)
chr7 (120-218)||(6544122-6544221)
chr7 (120-218)||(44896662-44896761)
chr7 (120-218)||(44907013-44907112)
chr7 (102-187)||(45552649-45552734)
chr7 (155-218)||(8500222-8500286)
chr7 (155-218)||(8510692-8510756)
chr7 (155-218)||(24541402-24541466)
chr7 (155-218)||(43982591-43982655)
chr7 (142-218)||(5382484-5382561)
chr7 (142-218)||(5392138-5392215)
chr7 (142-218)||(26348865-26348942)
chr7 (142-218)||(26363885-26363962)
chr7 (142-218)||(11627134-11627211)
chr7 (162-202)||(12769623-12769663)
chr7 (104-152)||(43982646-43982694)
chr7 (137-187)||(9006423-9006473)
[»] scaffold0014 (4 HSPs)
scaffold0014 (19-218)||(114903-115104)
scaffold0014 (19-179)||(153905-154066)
scaffold0014 (120-218)||(234889-234988)
scaffold0014 (19-152)||(146233-146357)
[»] scaffold0141 (1 HSPs)
scaffold0141 (19-218)||(18225-18425)
[»] scaffold0122 (1 HSPs)
scaffold0122 (19-218)||(22851-23039)
[»] scaffold0058 (5 HSPs)
scaffold0058 (19-174)||(24195-24350)
scaffold0058 (88-220)||(57624-57757)
scaffold0058 (120-218)||(58774-58873)
scaffold0058 (179-220)||(24342-24384)
scaffold0058 (178-218)||(67075-67116)
[»] scaffold0265 (1 HSPs)
scaffold0265 (32-202)||(10795-10967)
[»] scaffold1468 (1 HSPs)
scaffold1468 (84-218)||(801-936)
[»] scaffold0068 (1 HSPs)
scaffold0068 (104-218)||(33332-33448)
[»] scaffold0254 (1 HSPs)
scaffold0254 (120-218)||(8557-8656)
[»] scaffold0590 (3 HSPs)
scaffold0590 (155-218)||(9761-9825)
scaffold0590 (102-152)||(9816-9866)
scaffold0590 (87-129)||(9911-9953)
[»] scaffold1705 (1 HSPs)
scaffold1705 (100-218)||(127-234)
[»] scaffold0406 (1 HSPs)
scaffold0406 (109-183)||(14903-14976)
[»] scaffold0016 (1 HSPs)
scaffold0016 (145-202)||(13325-13381)


Alignment Details
Target: scaffold0031 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 112172 - 112372
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112172 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 112271  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  112272 ccttctgaactatcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 112371  T
Q  218 g 218  Q
    |    
T  112372 g 112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 31916476 - 31916276
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31916476 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcatgttcttgatgaatctgggttgcttatgaacaa 31916377  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  31916376 ccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 31916277  T
Q  218 g 218  Q
    |    
T  31916276 g 31916276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 4038571 - 4038771
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  4038571 gatagatccatgcagatgtacttttctagaccttttattcatgtcaagtgtacttgcatgttcttcatgtttttgatgaatctgggttgcttatgaacaa 4038670  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  4038671 ctttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 4038770  T
Q  218 g 218  Q
    |    
T  4038771 g 4038771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 20764024 - 20763824
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  20764024 gatagatccatgcatatgtacttttctggaccttttattcatgtcaagtatacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 20763925  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  20763924 ccttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 20763825  T
Q  218 g 218  Q
    |    
T  20763824 g 20763824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 27274772 - 27274972
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27274772 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggttgcttatgaacaa 27274871  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  27274872 ccttctgaactatcatcagaacgttctgattaacttcctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 27274971  T
Q  218 g 218  Q
    |    
T  27274972 g 27274972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 34131082 - 34131270
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34131082 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 34131181  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  34131182 ccttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 34131269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 19888945 - 19889133
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  19888945 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 19889044  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  19889045 ccttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 19889132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 37299406 - 37299622
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  37299406 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacaa 37299505  T
Q  119 c----------------cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |                |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37299506 ccttctgaactgggttgcttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 37299605  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  37299606 ggattcaatgtcctttg 37299622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 37549196 - 37549412
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  37549196 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacaa 37549295  T
Q  119 c----------------cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |                |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37549296 ccttctgaactgggttgcttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 37549395  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  37549396 ggattcaatgtcctttg 37549412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 37651994 - 37652210
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  37651994 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacaa 37652093  T
Q  119 c----------------cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |                |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37652094 ccttctgaactgggttgcttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 37652193  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  37652194 ggattcaatgtcctttg 37652210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 20896613 - 20896432
Alignment:
Q  23 gatctatgcagatgtacttttctggaccttttattcatgtcaagtttactt-gcatgctcttcatgttcttgatgaatctgggttg-cttatgaacaacc 120  Q
    |||| ||| ||||||||||| |||||| ||||||||||||||  | ||||| ||||| |||||||||||||||||| ||||||||  |||||||||||||    
T  20896613 gatccatgtagatgtactttactggacattttattcatgtcacttgtactttgcatgttcttcatgttcttgatgattctgggtttacttatgaacaacc 20896514  T
Q  121 ttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    || |||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  20896513 ttatgaactttcatcagaacgttctgataaactcactgatcaacattctgaactaactttttgaacttcagaattagttcat 20896432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 42091177 - 42091311
Alignment:
Q  85 atgttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctga 184  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42091177 atgttcttggtgattctgggttgcttatgaacaaccttctgaactctcatcagaacgttttgatcaactctctgatcaacattctgaactaactttctga 42091276  T
Q  185 acttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||| ||||||||||||| || |||||||||||||    
T  42091277 actttagaattagttcatggattcaatgtcctttg 42091311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 13572271 - 13572382
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  13572271 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacaa 13572370  T
Q  119 ccttctgaacta 130  Q
    ||||||||||||    
T  13572371 ccttctgaacta 13572382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 37817262 - 37817151
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  37817262 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacaa 37817163  T
Q  119 ccttctgaacta 130  Q
    ||||||||||||    
T  37817162 ccttctgaacta 37817151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 30944377 - 30944487
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  30944377 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 30944476  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  30944477 ccttctgaact 30944487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 30953799 - 30953909
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  30953799 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 30953898  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  30953899 ccttctgaact 30953909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 21681119 - 21681003
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21681119 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 21681020  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  21681019 ggattcaatgtcctttg 21681003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 20905127 - 20905309
Alignment:
Q  23 gatctatgcagatgtacttttctggaccttttattcatgtcaagtttactt-gcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaacc 120  Q
    |||| ||| ||||||| ||| ||| || ||||||||||||||  | ||||| ||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  20905127 gatccatgtagatgtaatttactgaacattttattcatgtcacatgtactttgcatattcttcatgttcttgatgattctgggtttgcttatgaacaacc 20905226  T
Q  121 ttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaact-ttctgaacttcagaattagttcat 202  Q
    ||||||||| |||| | ||||||||||||||||| ||||| |||||||| |||||||| || ||| |||||||||||||||||    
T  20905227 ttctgaactttcatcaaaacgttctgatcaactcactgataaacattctaaactaactgttatgaccttcagaattagttcat 20905309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 206121 - 206270
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaac-tctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||| |||||| ||||||||||||||||| ||  || ||||| || |    
T  206121 ttgcatgttcttcatgttcttgatgattctgggtttgtttatgaacaaccttctgaattatcatcagaacgttctgatcaacttcattggtcaacttttt 206220  T
Q  170 gaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  206221 gaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 206270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 22173977 - 22174093
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22173977 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagagttagttcat 22174076  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  22174077 ggattcaatgtcctttg 22174093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 18219909 - 18220016
Alignment:
Q  112 tgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaat 210  Q
    ||||||||||||||| || |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  18219909 tgaacaaccttctgagctctcatcagaacgttctgatcaacgttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaat 18220008  T
Q  211 gtcctttg 218  Q
    ||||||||    
T  18220009 gtcctttg 18220016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 13572404 - 13572503
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  13572404 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcataattagttcatggattcaatgtcctttg 13572503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 30944538 - 30944637
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  30944538 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 30944637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 30953960 - 30954059
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  30953960 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 30954059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 8766189 - 8766288
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  8766189 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 8766288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 33938662 - 33938563
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  33938662 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 33938563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 33949062 - 33948963
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  33949062 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 33948963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 18210602 - 18210666
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  18210602 tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 18210666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 18389639 - 18389562
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  18389639 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 18389562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 18360626 - 18360562
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  18360626 tctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 18360562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21752590 - 21752531
Alignment:
Q  160 tcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21752590 tcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21752531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21762013 - 21761954
Alignment:
Q  160 tcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21762013 tcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21761954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 18210451 - 18210495
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaac 128  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  18210451 catgttcttgatgaatctgggttgcttctgaacaaccttctgaac 18210495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 18219789 - 18219833
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaac 128  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  18219789 catgttcttgatgaatctgggttgcttctgaacaaccttctgaac 18219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 22173889 - 22173933
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaac 128  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  22173889 catgttcttgatgaatctgggttgcttctgaacaaccttctgaac 22173933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 37817129 - 37817075
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
    |||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||    
T  37817129 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattttgaact 37817075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18210403 - 18210447
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtc 63  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  18210403 gatagatccatgcagatgtacttttctgaaccttttattcatgtc 18210447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18219741 - 18219785
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtc 63  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  18219741 gatagatccatgcagatgtacttttctgaaccttttattcatgtc 18219785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 21681307 - 21681263
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtc 63  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  21681307 gatagatccatgcagatgtacttttctgaaccttttattcatgtc 21681263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 22173841 - 22173885
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtc 63  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  22173841 gatagatccatgcagatgtacttttctgaaccttttattcatgtc 22173885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 31104969 - 31104916
Alignment:
Q  148 tcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  31104969 tcaactttctgagcaacattctgaactaactttctgaac-tcagagttagttcat 31104916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 21681259 - 21681215
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaac 128  Q
    |||||||||||||||| | |||||||| |||||||||||||||||    
T  21681259 catgttcttgatgaatttaggttgcttctgaacaaccttctgaac 21681215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 23379084 - 23379140
Alignment:
Q  145 tgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||||| || | ||||||||| |||||||||||||||| ||||| |||||||||    
T  23379084 tgatcaactcccttagcaacattctaaactaactttctgaac-tcagagttagttcat 23379140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 37817106 - 37817043
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||||| | ||| || ||||||||||||||||||||| || |||||||||||||    
T  37817106 tctgatcaactttctgatc-aacattttgaacttcagaattagttcatggattcaatgtcctttg 37817043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 1596120 - 1595920
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  1596120 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 1596021  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1596020 ccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 1595921  T
Q  218 g 218  Q
    |    
T  1595920 g 1595920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 24505796 - 24505996
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  24505796 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtgtatttgtatgttcttcatgttattgatgaatctgggttgcttatgaacaa 24505895  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  24505896 ccttcggaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattggttcatggattcaatgtccttt 24505995  T
Q  218 g 218  Q
    |    
T  24505996 g 24505996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 16320974 - 16320774
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  16320974 gatagatccatgcagatgtacttttctggaccttttattcatttcaagtgtacttgcatgttcttcacattcttgatgaatctgggttgcttatgaacaa 16320875  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||    
T  16320874 ccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaaatacctttctgaacttcagaattagttcatggattcaatgtccttt 16320775  T
Q  218 g 218  Q
    |    
T  16320774 g 16320774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 26161553 - 26161402
Alignment:
Q  48 accttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaaccttctgaactat-cattagaacgttctg 146  Q
    |||||||||||||||||||| | |||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||    
T  26161553 accttttattcatgtcaagtatgcttgcatgttcttcacgttcttgatgaatctaggttgcttatggacaaccttctgaactcttcatcagaacgttctg 26161454  T
Q  147 atcaactctctgatcaacattctgaactaactttctgaacttcagaattagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26161453 atcaactctctgatcaacattctgaactaactttctgaacttcagaattagt 26161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 791683 - 791803
Alignment:
Q  83 tcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttc 181  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  791683 tcatgttcttgatgattctgggtttgcttatgaacaaccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttc 791782  T
Q  182 tgaacttcagaattagttcat 202  Q
    |||||||||||||||||||||    
T  791783 tgaacttcagaattagttcat 791803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 30658582 - 30658731
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaact-ctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||| ||||    
T  30658582 ttgcatgttcttcatgttcttgatgattctgggtttgcttatgaacaaccttctgaattatcatcagaacgttctgatcaacttcactgatcaactttct 30658681  T
Q  170 gaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  30658682 gaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 30658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 26021500 - 26021610
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  26021500 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 26021599  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  26021600 ccttctgaact 26021610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 17823724 - 17823575
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaact-ctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| | |||||||||||||||| | ||||||||| ||||    
T  17823724 ttgcatgttcttcatgttcttgatgattatgggtttgcttatgaacaaccttctgaattatcatcaaaacgttctgatcaacttcactgatcaactttct 17823625  T
Q  170 gaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
     |||||||||||||||||||||||||||||||| || |||||||||||||    
T  17823624 aaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 17823575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 12991027 - 12991144
Alignment:
Q  102 gggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttca 201  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  12991027 gggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagagttagttca 12991126  T
Q  202 tcga-tcaatgtcctttg 218  Q
    | || |||||||||||||    
T  12991127 tggattcaatgtcctttg 12991144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 26021655 - 26021772
Alignment:
Q  102 gggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttca 201  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26021655 gggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagagttagttca 26021754  T
Q  202 tcga-tcaatgtcctttg 218  Q
    | || |||||||||||||    
T  26021755 tggattcaatgtcctttg 26021772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 16923193 - 16923069
Alignment:
Q  80 tcttcatgttcttgatgaatctgggt-tgcttatgaacaaccttctgaactatcattagaacgttctgatcaact-ctctgatcaacattctgaactaac 177  Q
    |||||||||||||||||| | ||||| ||||||||||||||||| |||| |||||| |||||||||||||||||| |  || ||||| ||||||||||||    
T  16923193 tcttcatgttcttgatgattttgggtgtgcttatgaacaaccttttgaattatcatcagaacgttctgatcaacttcattggtcaactttctgaactaac 16923094  T
Q  178 tttctgaacttcagaattagttcat 202  Q
    |||||||||||||||||||||||||    
T  16923093 tttctgaacttcagaattagttcat 16923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 12990911 - 12990998
Alignment:
Q  42 ttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaaccttctgaact 129  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  12990911 ttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgtttctgaacaaccttctgaact 12990998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 16897263 - 16897164
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  16897263 cttctgaactctgatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 16897164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 16907916 - 16907817
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  16907916 cttctgaactctgatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 16907817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 18712668 - 18712727
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatg 78  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18712668 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtatacttgcatg 18712727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 62 - 262
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  62 gatagatccatgcagatgtacttttttggaccttttattcatgtcaaatgtacttgcatgttcttcatgttcttgatgaatctgggttgcttatgaacaa 161  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  162 ccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 261  T
Q  218 g 218  Q
    |    
T  262 g 262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 13120356 - 13120556
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  13120356 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 13120455  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  13120456 ccttctgaactatcatcagaacgttctgatcgactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 13120555  T
Q  218 g 218  Q
    |    
T  13120556 g 13120556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 13113227 - 13113427
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  13113227 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 13113326  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||    
T  13113327 ccttctgaactatcatcagaacgttctgatcgactctctgatcaacattcttaactaactttctgaacttcagaattagttcatggattcaatgtccttt 13113426  T
Q  218 g 218  Q
    |    
T  13113427 g 13113427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 20745461 - 20745650
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaa-tctgggttgcttatgaaca 117  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20745461 gatagatccatgcagatgaacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaactctgggttgcttatgaaca 20745560  T
Q  118 accttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    | ||||||||||||||| |||||||            |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  20745561 atcttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctt 20745648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 51979200 - 51979348
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctggg-ttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctg 170  Q
    ||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||    
T  51979200 ttgcatgttcttcatgttcttgatgattctaggcttgcttatgaacaaccttctgaattatcatcagaacgttctgaccaactctttgatcaacattctg 51979299  T
Q  171 aactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    | |||||||||||||||||||||||||||||| || |||||||||||||    
T  51979300 atctaactttctgaacttcagaattagttcatggattcaatgtcctttg 51979348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 4783366 - 4783476
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  4783366 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgcttctgaacaa 4783465  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  4783466 ccttctgaact 4783476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 20292753 - 20292619
Alignment:
Q  85 atgttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctga 184  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||| |||    
T  20292753 atgttcttgatgattctgggttgctaatgaacaaccttctgaactcttatcaaaacgttctgatcaactctctgatcaacattctgaactaactttttga 20292654  T
Q  185 acttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||| || |||||||||||||    
T  20292653 acttcagaattagttcatggattcaatgtcctttg 20292619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 18560652 - 18560542
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  18560652 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgataaatctgggtagcttctgaacaa 18560553  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  18560552 ccttctgaact 18560542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 2490058 - 2490177
Alignment:
Q  100 ctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagtt 199  Q
    |||| |||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2490058 ctggattgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagtt 2490157  T
Q  200 catcga-tcaatgtcctttg 218  Q
    ||| || |||||||||||||    
T  2490158 catggattcaatgtcctttg 2490177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 19828629 - 19828740
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  19828629 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgtttttgatgaatctgggtagcttctgaacaa 19828728  T
Q  119 ccttctgaacta 130  Q
    ||||||||||||    
T  19828729 ccttctgaacta 19828740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 18560507 - 18560408
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  18560507 cttctgaactatcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 18560408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 5656370 - 5656469
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  5656370 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 5656469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 9536491 - 9536392
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  9536491 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 9536392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 9546913 - 9546814
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  9546913 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 9546814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 19828762 - 19828861
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  19828762 cttctgaactctcatcagaacgttttgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 19828861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 2489957 - 2490059
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||        ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  2489957 gatagatccatgcagatgtacttttctggaccttttattcatgtc--------ttgcatgttcttcacgttcttgatgaatctgggttgcttctgaacaa 2490048  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  2490049 ccttctgaact 2490059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 24763153 - 24763024
Alignment:
Q  91 ttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttc 189  Q
    ||||||| |||||||| |||||||||||| ||| |||| | |||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  24763153 ttgatgattctgggtttgcttatgaacaatcttatgaaatctcatcagaacgttctgatcaactcactgaccaacattctgaacgaactttctgaacttc 24763054  T
Q  190 agaattagttcatcga-tcaatgtcctttg 218  Q
    | |||||||||||  | |||||||||||||    
T  24763053 aaaattagttcatgaattcaatgtcctttg 24763024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 4783534 - 4783598
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  4783534 tctgatcaacattctgaactaactttctgaacttcagagttagttcatggattcaatgtcctttg 4783598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4370559 - 4370495
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||    
T  4370559 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaaagtcctttg 4370495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4380305 - 4380241
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||    
T  4380305 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaaagtcctttg 4380241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 12376128 - 12376088
Alignment:
Q  161 caacattctgaactaactttctgaacttcagaattagttca 201  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  12376128 caaccttctgaactaactttctgaacttcagaattagttca 12376088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 4370598 - 4370550
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  4370598 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 4370550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 4380344 - 4380296
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  4380344 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 4380296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 10508636 - 10508704
Alignment:
Q  115 acaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctga 184  Q
    ||||||||||||||| |  || |||| || |||| ||||| |||| ||||||||||||||||||||||||    
T  10508636 acaaccttctgaactctgctt-gaacattatgattaactcactgagcaacattctgaactaactttctga 10508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 20531713 - 20531914
Alignment:
Q  19 gatagatctatgcagatgtacttttctggacctttt-attcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaaca 117  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  20531713 gatagatccatgcagatgtacttttctggacctttttattcatgtcaagtgtacttgcatgttcttcatgttcttgatgaatctaggttgcttatgaaca 20531812  T
Q  118 accttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  20531813 accttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctt 20531912  T
Q  217 tg 218  Q
    ||    
T  20531913 tg 20531914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 33774526 - 33774714
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33774526 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 33774625  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||| ||||||||||| |||||||            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  33774626 ccttttgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 33774713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 31991834 - 31992023
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaa-tctgggttgcttatgaaca 117  Q
    |||||||| ||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31991834 gatagatccatgcagatgaacttttctggatattttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaattctgggttgcttatgaaca 31991933  T
Q  118 accttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    ||||||||||||||||| |||||||            |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  31991934 accttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctt 31992021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 31999635 - 31999762
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaa-tctgggttgcttatgaaca 117  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31999635 gatagatccatgcagatgaacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaattctgggttgcttatgaaca 31999734  T
Q  118 accttctgaactatcattagaacgttct 145  Q
    ||||||||||||||||| ||||||||||    
T  31999735 accttctgaactatcatcagaacgttct 31999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 5759004 - 5758867
Alignment:
Q  82 ttcatgttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttc 181  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||    
T  5759004 ttcatgttcttgataattctgggttgcttatgaacaaccttctgaactcttatcataacgttctgatcaactctctgatcaacattctgaactaactttc 5758905  T
Q  182 tgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||| |||||| || |||||||||||||    
T  5758904 tgaacttcagaattggttcatggattcaatgtcctttg 5758867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 14882082 - 14882193
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  14882082 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgcttctgaacaa 14882181  T
Q  119 ccttctgaacta 130  Q
    ||||||||||||    
T  14882182 ccttctgaacta 14882193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 14894432 - 14894543
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  14894432 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgcttctgaacaa 14894531  T
Q  119 ccttctgaacta 130  Q
    ||||||||||||    
T  14894532 ccttctgaacta 14894543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 11431105 - 11431253
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctg 170  Q
    ||||||| |||||||||||||||||| |||| ||| |||||||||||||||| |||| |||||| |||||||||||||||||||| | ||||||||||||    
T  11431105 ttgcatgttcttcatgttcttgatgattctgagtttgcttatgaacaaccttatgaattatcatcagaacgttctgatcaactctttaatcaacattctg 11431204  T
Q  171 aactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||    
T  11431205 aactaactttctgaactttagaattagttcatggactcaatgtcctttg 11431253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 13673918 - 13673808
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  13673918 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 13673819  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  13673818 ccttctgaact 13673808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 23015450 - 23015599
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaact-ctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| | |||||| ||||||||||||| || |||| |||||| |||||||||||||||||| | ||||||||||||||    
T  23015450 ttgcatgttcttcatgttcttgatgattatgggtttgcttatgaacaactttatgaattatcatcagaacgttctgatcaacttcactgatcaacattct 23015549  T
Q  170 gaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  23015550 gaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 23015599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 14882219 - 14882338
Alignment:
Q  100 ctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagtt 199  Q
    ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  14882219 ctgggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagagttagtt 14882318  T
Q  200 catcga-tcaatgtcctttg 218  Q
    ||| || |||||||||||||    
T  14882319 catggattcaatgtcctttg 14882338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 14894587 - 14894704
Alignment:
Q  102 gggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttca 201  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14894587 gggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagagttagttca 14894686  T
Q  202 tcga-tcaatgtcctttg 218  Q
    | || |||||||||||||    
T  14894687 tggattcaatgtcctttg 14894704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 13673745 - 13673646
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  13673745 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 13673646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 21203567 - 21203666
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  21203567 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 21203666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 21213983 - 21214082
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  21213983 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 21214082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 21333532 - 21333433
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  21333532 cttctgagctctcatcagaacgttctgatcaactttctaatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 21333433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 32008313 - 32008391
Alignment:
Q  141 gttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  32008313 gttctgatcaactttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 32008391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 9325769 - 9325833
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  9325769 tctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 9325833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 2690762 - 2690833
Alignment:
Q  116 caaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaact 187  Q
    |||||||||||||| |  ||  ||| |||||||||| || |||| |||||||||||||||||||||||||||    
T  2690762 caaccttctgaactctgcttgaaacattctgatcaattcactgagcaacattctgaactaactttctgaact 2690833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 20098370 - 20098322
Alignment:
Q  153 tctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||| |||||||||||||||||| ||||| |||||||||    
T  20098370 tctctgagcaacattttgaactaactttctgaac-tcagagttagttcat 20098322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 1247 - 1447
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  1247 gatagatctatgcagatgaacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatattcttgatgaatcagggttgcttatgaacaa 1346  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  1347 ccttctgaactatcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacctcagaattagttcatggattcaatgtccttt 1446  T
Q  218 g 218  Q
    |    
T  1447 g 1447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 12269 - 12465
Alignment:
Q  23 gatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaacctt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12269 gatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaacctt 12368  T
Q  123 ctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  12369 ctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattacttcatggattcaatgtcctttg 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 16629197 - 16628997
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16629197 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcatgttcttgatgaatctgggttgcttatgaacaa 16629098  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  16629097 ccttctgaactatcatcagaacattctgatcaactctctgatcaaccttctgaactaactttctgagcttcagaattagttcatggattcaatgtccttt 16628998  T
Q  218 g 218  Q
    |    
T  16628997 g 16628997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 7847147 - 7847348
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||| ||||||||    
T  7847147 gatagatccatgcaaatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttaacgttcttgatgaatctgggttgctgatgaacaa 7847246  T
Q  119 ccttctgaacta-tcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  | |||||||||||    
T  7847247 ccttctgaactattcatcagaacgttctgatcaactcactgatcaacattttgaactaactttctgaacttcagaattagttcatgaattcaatgtcctt 7847346  T
Q  217 tg 218  Q
    ||    
T  7847347 tg 7847348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 12866001 - 12865823
Alignment:
Q  32 agatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaaccttctgaactat 131  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||         |||||||||||||||||||||||||||||||||||    
T  12866001 agatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcatg---------aatctgggttgcttatgaacaaccttctgaactat 12865911  T
Q  132 cattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  12865910 catcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 12865823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 53946733 - 53946881
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctg 170  Q
    ||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  53946733 ttgcatgttcttcatgttcttgatgattttgggtttgcttatgaacaaccttctgaattatcatcagaacgttctgatcaactctttgatcaacattctg 53946832  T
Q  171 aactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||    
T  53946833 aactaactttctgaacttcagaattagttcatggattcaatgtcttttg 53946881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 16211626 - 16211749
Alignment:
Q  80 tcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaact 178  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  16211626 tcttcatgttcttgatgattctgggtttgcttatgaacaaccttctaaactatcatcataacgttctgatcaactctctgatcaacattctgaactaact 16211725  T
Q  179 ttctgaacttcagaattagttcat 202  Q
    |||||||||||| |||||||||||    
T  16211726 ttctgaacttcataattagttcat 16211749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 17828891 - 17829001
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  17828891 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 17828990  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  17828991 ccttctgaact 17829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 17838282 - 17838392
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  17838282 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgagttgcttctgaacaa 17838381  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  17838382 ccttctgaact 17838392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 3488388 - 3488504
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3488388 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 3488487  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  3488488 ggattcaatgtcctttg 3488504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 3497655 - 3497771
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3497655 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 3497754  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  3497755 ggattcaatgtcctttg 3497771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 3606518 - 3606617
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  3606518 cttctgaactatcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagagttagttcatggattcaatgtcctttg 3606617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 16472275 - 16472134
Alignment:
Q  80 tcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaac-tctctgatcaacattctgaactaac 177  Q
    |||||||||||| ||||| | |||||| |||| ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||| |||||||| |||    
T  16472275 tcttcatgttctcgatgattttgggtttgcttgtgaacaaccatctgaactatcatcagaacgttctgatcaacttcactgatcaactttctgaacaaac 16472176  T
Q  178 tttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||| ||||||||||||||||||||| || |||||||||||||    
T  16472175 tttatgaacttcagaattagttcatggattcaatgtcctttg 16472134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 17829052 - 17829151
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  17829052 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 17829151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 17838443 - 17838542
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  17838443 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttttgaacttcagaattagttcatggattcaatgtcctttg 17838542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 6691572 - 6691473
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  6691572 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 6691473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 6701978 - 6701879
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  6701978 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 6701879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 16248641 - 16248542
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  16248641 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 16248542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 2829172 - 2829036
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctg 170  Q
    ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||| |||||| |||||||| |||||||||            || ||    
T  2829172 ttgcatgttcttcatgttcttgatgattctgggtttggttatgaacaaccttctgaattatcatcagaacgttttgatcaact------------ttttg 2829085  T
Q  171 aactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  2829084 aactaactttctgaacttcagaattagttcatggattcaatgtcctttg 2829036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 44888367 - 44888263
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggttg-cttatgaacaaccttctgaactatcattagaacgttctgatcaac-tctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||| |||||| | ||||||||||||||| || || |||||| ||||    
T  44888367 ttgcatgttcttcatgttcttgatgattctgggttttcttatgaacaaccttctgaattatcatcaaaacgttctgatcaacttcacttatcaactttct 44888268  T
Q  170 gaact 174  Q
    |||||    
T  44888267 gaact 44888263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 5293948 - 5294012
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  5293948 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 5294012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 5303562 - 5303626
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  5303562 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 5303626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 21845515 - 21845451
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21845515 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21845451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 21854944 - 21854880
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21854944 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21854880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 21901378 - 21901314
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21901378 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21901314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 21910807 - 21910743
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  21910807 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 21910743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 27681610 - 27681674
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  27681610 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 27681674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 27691221 - 27691285
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  27691221 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 27691285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 3606423 - 3606483
Alignment:
Q  69 tacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaaccttctgaact 129  Q
    |||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  3606423 tacttgtatgctcttcacgttcttgatgaatctgggtagcttctgaacaaccttctgaact 3606483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 21845554 - 21845506
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  21845554 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 21845506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 21854983 - 21854935
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  21854983 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 21854935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 21901417 - 21901369
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  21901417 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 21901369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 21910846 - 21910798
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  21910846 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 21910798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 44888275 - 44888231
Alignment:
Q  175 aactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  44888275 aactttctgaacttcagaattagttcatggattcaatgtcctttg 44888231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 1292924 - 1292860
Alignment:
Q  137 gaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||| ||||||| ||||  |||| ||||||| ||||||||||||||| |||||||| |||||||||    
T  1292924 gaacattctgataaacttactgagcaacattatgaactaactttctg-acttcagagttagttcat 1292860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 11476636 - 11476596
Alignment:
Q  161 caacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  11476636 caacattctgaactaactttctgaac-tcagagttagttcat 11476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 573924 - 573724
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  573924 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgtttttcatgttcttgatgaatctgggttgcttatgaacaa 573825  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  573824 ccttctgaactatcatcagaacgttctaatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcattgtccttt 573725  T
Q  218 g 218  Q
    |    
T  573724 g 573724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 22688063 - 22688263
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  22688063 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcccgttcttgatgaatctgggttgcttatgaacaa 22688162  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  22688163 ccttctgaactatcatcagaatgttctgatcaactctctgatcaacattctgaactaactttatgaacttcagaattagttcatggattcaatgtccttt 22688262  T
Q  218 g 218  Q
    |    
T  22688263 g 22688263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 12570250 - 12570049
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  12570250 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtatacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 12570151  T
Q  119 ccttctgaac-tatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || || |||||||||||    
T  12570150 ccttctgaacttctcatcagaacgttctgatcaactctctgatcaacattttgaactaactttctgaactttagaattagttaatggattcaatgtcctt 12570051  T
Q  217 tg 218  Q
    ||    
T  12570050 tg 12570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 45190501 - 45190313
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45190501 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 45190402  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||||||||            |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  45190401 ccttctgaactatcatcagaacgttctgat------------caacattctgaactaactttctgaacttcagaattagttcatggattcaatgtctttt 45190314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 16934682 - 16934837
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| | |||||||||||||||||||||| |||||||||    
T  16934682 gatagatccatgcagatgtacttttctggaccttttattcatgttaagtgtacttgcatgttctttacgttcttgatgaatctgggttgcctatgaacaa 16934781  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16934782 ccttctgaactatcatcagaacgttctgatcaactctctaatcaacattctgaact 16934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 17005342 - 17005497
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| | |||||||||||||||||||||| |||||||||    
T  17005342 gatagatccatgcagatgtacttttctggaccttttattcatgttaagtgtacttgcatgttctttacgttcttgatgaatctgggttgcctatgaacaa 17005441  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  17005442 ccttctgaactatcatcagaacgttctgatcaactctctaatcaacattctgaact 17005497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 32937883 - 32937991
Alignment:
Q  112 tgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaa 209  Q
    ||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  32937883 tgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaa 32937982  T
Q  210 tgtcctttg 218  Q
    |||||||||    
T  32937983 tgtcctttg 32937991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 9503477 - 9503576
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  9503477 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 9503576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 9514843 - 9514942
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  9514843 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 9514942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 18650606 - 18650507
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  18650606 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 18650507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 18662676 - 18662577
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  18662676 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 18662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 3606366 - 3606470
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaac-tctctgatcaacattct 169  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| ||||    
T  3606366 ttgcatgttcttcatgttcttgatgattctgggtttgcttatgaacaaccttctgaattatcatcagaacgttctgatcaacttcactgatcaactttct 3606465  T
Q  170 gaact 174  Q
    |||||    
T  3606466 gaact 3606470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 5337893 - 5337957
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  5337893 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 5337957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 5347789 - 5347853
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  5347789 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 5347853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 18660913 - 18660836
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  18660913 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 18660836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4456376 - 4456312
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||| |||| ||||||||| | ||||||||||||||||||||||||| || |||||||||||||    
T  4456376 tctgaacaaccttctgaactgattttctgaacttcagaattagttcatggattcaatgtcctttg 4456312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4457440 - 4457376
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||| |||| ||||||||| | ||||||||||||||||||||||||| || |||||||||||||    
T  4457440 tctgaacaaccttctgaactgattttctgaacttcagaattagttcatggattcaatgtcctttg 4457376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4467065 - 4467001
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||| |||| ||||||||| | ||||||||||||||||||||||||| || |||||||||||||    
T  4467065 tctgaacaaccttctgaactgattttctgaacttcagaattagttcatggattcaatgtcctttg 4467001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 15940285 - 15940198
Alignment:
Q  113 gaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||||||||| || || || |||| |||| |||||||| |||| ||| ||||||||||||||||||| || ||||| |||||||||    
T  15940285 gaacaaccttctgacctctcttt-gaacattctaatcaactcgctgagcaatattctgaactaactttctg-acctcagagttagttcat 15940198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 24239640 - 24239704
Alignment:
Q  137 gaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||| ||||||| ||||| |||| ||||||||||||||||||||||| || ||||| |||||||||    
T  24239640 gaacattctgattaactcgctgagcaacattctgaactaactttctg-acctcagagttagttcat 24239704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 3606458 - 3606502
Alignment:
Q  175 aactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||| | || |||||||||||||    
T  3606458 aactttctgaacttcagaattagttcgtggattcaatgtcctttg 3606502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 16934829 - 16934869
Alignment:
Q  179 ttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  16934829 ttctgaacttcagaattagttcatggattcaatgtcctttg 16934869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 17005489 - 17005529
Alignment:
Q  179 ttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  17005489 ttctgaacttcagaattagttcatggattcaatgtcctttg 17005529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 20328763 - 20328963
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20328763 gatagattcatgcatatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 20328862  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  20328863 ccttctgaactatcatcagaacgttttgatcaactttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 20328962  T
Q  218 g 218  Q
    |    
T  20328963 g 20328963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 20318439 - 20318626
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20318439 gatagattaatgcatatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 20318538  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| |||||||            |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  20318539 ccttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacatcagaattagttcatggattcaatgtccttt 20318626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27065753 - 27065564
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaa-tctgggttgcttatgaaca 117  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27065753 gatagatccatgtagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaattatgggttgcttatgaaca 27065654  T
Q  118 accttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    ||||||||||||||||| |||||||            |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  27065653 accttctgaactatcatcagaacgt------------tctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcttt 27065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 26193835 - 26194023
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  26193835 gatagatccatgcaaatgtactttactggaccttttattcatgtcaagtatacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 26193934  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    ||||||  |||||||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  26193935 ccttctagactatcatcagaacgttctgatcaact------------ttctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 26194022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 21821842 - 21822014
Alignment:
Q  32 agatgtacttttctggaccttttattcatgtcaagtttac-ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaact 129  Q
    ||||||||||| |||||| ||||||||||||||  | ||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21821842 agatgtactttactggacattttattcatgtcacatgtacgttgcatgttcttcatgttcttgatgattctgggtttgcttatgaacaaccttctgaact 21821941  T
Q  130 atcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
     |||| | |||||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  21821942 ttcatcaaaacgttctgatcaattcactgataaacattctgaactaattttatgaacttcagaattagttcat 21822014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 12418485 - 12418375
Alignment:
Q  38 acttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaa-tctgggttgcttatgaacaaccttctgaactatcatta 136  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  12418485 acttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgatgaattctgggttgcttatgaacaaccttctgaactatcatca 12418386  T
Q  137 gaacgttctga 147  Q
    |||||||||||    
T  12418385 gaacgttctga 12418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 22960557 - 22960401
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatct-gggttgcttatgaaca 117  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| ||| |||||| ||||||||||||||| || |||||||||||||    
T  22960557 gatagatccatgcagatgtacctttctggaccttttgttcatgtcaagtgtacttgaatgttcttcacgttcttgatgaatctaggtttgcttatgaaca 22960458  T
Q  118 accttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
     ||||||||||| |||| ||||||||||   |||||| |||||||||||||||||||    
T  22960457 cccttctgaactttcatcagaacgttctagccaactcgctgatcaacattctgaact 22960401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 21782374 - 21782202
Alignment:
Q  23 gatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaacct 121  Q
    |||| ||| ||||||||||| |||||| |||||||||||||| || |||||        | |||||||||||||| |||||||| |||||||||||||||    
T  21782374 gatccatgtagatgtactttactggacattttattcatgtcacgtgtactt--------tgcatgttcttgatgattctgggtttgcttatgaacaacct 21782283  T
Q  122 tctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||| |||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  21782282 tctaaactttcatcagaacgttttgatcaactcactgatcaacattctgaactaactttctgaacttcataattagttcat 21782202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 49332955 - 49332820
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctg 183  Q
    |||||||||||||  |  || ||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  49332955 catgttcttgatgttttgggtttgcttatgaacaaccttctgaattatcatcagaacgttctgatccactctttgatcaacattctgaactaactttctg 49332856  T
Q  184 aacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||||||| || |||||||||||||    
T  49332855 aacttcagaattagttcatggattcaatgtcctttg 49332820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 25867946 - 25867836
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||     
T  25867946 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcacgttcttgatgaatctgggtagcttctgaacac 25867847  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  25867846 ccttctgaact 25867836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 20311893 - 20311787
Alignment:
Q  103 ggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20311893 ggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctaaacttcagaattagttcat 20311794  T
Q  203 cgatcaa 209  Q
     ||||||    
T  20311793 tgatcaa 20311787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 20308414 - 20308298
Alignment:
Q  103 ggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||| ||||| |||||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20308414 ggttgcttctgaacgaccttctgaactctcaacagaatgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 20308315  T
Q  203 cgatc-aatgtcctttg 218  Q
     |||| |||||||||||    
T  20308314 tgatcaaatgtcctttg 20308298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 20308534 - 20308432
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||        ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  20308534 gatagatccatgcagatgtacttttctggaccttttattcatgtc--------ttgcatgttcttcacgttcttgatgaatctgggttgcttctgaacaa 20308443  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  20308442 ccttctgaact 20308432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 18097381 - 18097497
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctg 170  Q
    ||||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||||| |||| ||||||||||||||||||            |||||    
T  18097381 ttgcatgttcttcatgttcttgatgattctgagtttgtttatgaacaaccttctgaactctcatcagaacgttctgatcaact------------ttctg 18097468  T
Q  171 aactaactttctgaacttcagaattagtt 199  Q
    |||||||||||||||||||||||||||||    
T  18097469 aactaactttctgaacttcagaattagtt 18097497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 37011624 - 37011536
Alignment:
Q  72 ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctga 159  Q
    ||||||| |||||||||||||||||| | | |||| ||||| ||||||||||||||| |||||| |||||||||||||||||| |||||    
T  37011624 ttgcatgttcttcatgttcttgatgattttaggtttgcttaagaacaaccttctgaattatcatcagaacgttctgatcaactttctga 37011536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 20314218 - 20314116
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||| | ||||| ||||||||||||||||||||||||        ||||||| |||||| ||||||||||||| |||||||||| |||| ||    
T  20314218 gatagatccatgtatatgtaattttctggaccttttattcatgtc--------ttgcatgttcttcacgttcttgatgaatatgggttgcttctgaagaa 20314127  T
Q  119 ccttctgaact 129  Q
    |||| ||||||    
T  20314126 ccttttgaact 20314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 12418380 - 12418327
Alignment:
Q  166 ttctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||||||||    
T  12418380 ttctgaacaaactttctgaacttcagaattagttcatggattcaatgtcctttg 12418327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 25867818 - 25867775
Alignment:
Q  131 tcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  25867818 tcatcagaacgttctgatcaactttctgatcaacattctgaact 25867775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 25867806 - 25867743
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||||| | ||| |||||||||||||||||||||||| || |||||||||||||    
T  25867806 tctgatcaactttctgatc-aacattctgaacttcagaattagttcatggattcaatgtcctttg 25867743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 18062713 - 18062777
Alignment:
Q  137 gaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||| |||||||||||| | ||| ||||||||||||||| |||| ||||| ||||| |||||||||    
T  18062713 gaacattctgatcaactttatgagcaacattctgaactatctttttgaac-tcagagttagttcat 18062777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1411 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold1411
Description:

Target: scaffold1411; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 17 - 217
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  17 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgatcttcacgttcttgatgaatctgggttgcttatgaacaa 116  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  117 ccttctgaactatcatcagaacgttctgattaacttcctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 216  T
Q  218 g 218  Q
    |    
T  217 g 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 19585440 - 19585240
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19585440 gatagatccatgcagatgtacttttctggaccttttatttatgtcaattgtacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 19585341  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||    
T  19585340 ccttttgaactatcatcagaacgttctgatcaactctctgatcaacattttgaactaactttctgaacttcagaattagttcatggattcaatgtcattt 19585241  T
Q  218 g 218  Q
    |    
T  19585240 g 19585240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27988179 - 27987979
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  27988179 gatagatccatgcagatgtactttcctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 27988080  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    ||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  27988079 ccttctggactatcatcaaaatgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 27987980  T
Q  218 g 218  Q
    |    
T  27987979 g 27987979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 19799398 - 19799288
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  19799398 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgcttctgaacaa 19799299  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  19799298 ccttctgaact 19799288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 24541218 - 24541328
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  24541218 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgctcttcatgttcttgataaatctgggttgcttctgaacaa 24541317  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  24541318 ccttctgaact 24541328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 45552861 - 45552751
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  45552861 gatagatccatgcagatgtacttttctggaccttttattcacgtcaagtgtacttgcatgctcttcatgttcttgataaatcttggttgcttctgaacaa 45552762  T
Q  119 ccttctgaact 129  Q
    |||||||||||    
T  45552761 ccttctgaact 45552751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 10415233 - 10415093
Alignment:
Q  82 ttcatgttctt-gatgaatctgggttg-cttatgaacaaccttctgaactatcattagaacgttctgatcaactct-ctgatcaacattctgaactaact 178  Q
    ||||||||||| ||||| ||||||||  |||||||||||||||||||| |||||| |||||||||||||| ||| | ||||||||| |||||||||||||    
T  10415233 ttcatgttctttgatgattctgggtttacttatgaacaaccttctgaattatcatcagaacgttctgatcgactttactgatcaactttctgaactaact 10415134  T
Q  179 ttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  10415133 ttctgaacttcagaattagttcatggattcaatgtcctttg 10415093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 19799289 - 19799170
Alignment:
Q  100 ctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagtt 199  Q
    ||||||||||| ||||| |||||||||||| |||| | |||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||    
T  19799289 ctgggttgcttctgaacgaccttctgaactctcatcaaaacgttctgatcaactttttgatcaacattctgaactaactttctgaacatcagagttagtt 19799190  T
Q  200 catcga-tcaatgtcctttg 218  Q
    ||| || |||||||||||||    
T  19799189 catggattcaatgtcctttg 19799170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 5926271 - 5926172
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  5926271 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 5926172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 6533922 - 6533823
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  6533922 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 6533823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 6544221 - 6544122
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  6544221 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 6544122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 44896761 - 44896662
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  44896761 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 44896662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 44907112 - 44907013
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  44907112 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 44907013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 45552734 - 45552649
Alignment:
Q  102 gggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaact 187  Q
    ||||||||| ||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45552734 gggttgcttctgaacgaccttctgaactctcatcataacgttctgatcaactctctgatcaacattctgaactaactttctgaact 45552649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 8500286 - 8500222
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  8500286 tctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 8500222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 8510756 - 8510692
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  8510756 tctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 8510692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 24541402 - 24541466
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  24541402 tctgatcaacattctgaactaactttctgaacttcagagttagttcatggattcaatgtcctttg 24541466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 43982655 - 43982591
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  43982655 tctgatcaacattctgaactaattttctgaacttcagaattagttcatggattcaatgtcctttg 43982591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 5382484 - 5382561
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  5382484 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 5382561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 5392138 - 5392215
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  5392138 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 5392215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 26348865 - 26348942
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  26348865 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 26348942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 26363885 - 26363962
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  26363885 ttctgaacaaccttctgagcaacattctgatctaactttctgaacttcagaattagttcatggattcaatgtcctttg 26363962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 11627134 - 11627211
Alignment:
Q  142 ttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||| ||||  ||||| ||||||||||| |||| ||||||||||||||||||||||||| || | |||||||||||    
T  11627134 ttctgaacaaccttctgagcaacattctgatctaagtttctgaacttcagaattagttcatggatttaatgtcctttg 11627211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 12769663 - 12769623
Alignment:
Q  162 aacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  12769663 aacattctgaactaactttatgaacttcagaattagttcat 12769623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 43982694 - 43982646
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  43982694 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaac 43982646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 9006473 - 9006423
Alignment:
Q  137 gaacgttctgatcaactctctgatcaacattctgaactaactttctgaact 187  Q
    |||| |||||||||||| | ||| ||||||||| |||||||||||||||||    
T  9006473 gaacattctgatcaactttttgagcaacattctaaactaactttctgaact 9006423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 114903 - 115104
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  114903 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 115002  T
Q  119 ccttctgaact-atcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctt 216  Q
    | || ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||    
T  115003 cattttgaactcttcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgatcttcagaattagttcatgaattcaatgtcctt 115102  T
Q  217 tg 218  Q
    ||    
T  115103 tg 115104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 153905 - 154066
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| ||| |||||||||||| |||||||||||||||    
T  153905 gatagatccatgcagatgtacttttctggaccttttattcatgtcaagtatgcttgcatgttcttcacgtttttgatgaatctgagttgcttatgaacaa 154004  T
Q  119 ccttctgaact-atcattagaacgttctgatcaactctctgatcaacattctgaactaactt 179  Q
    |||| ||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||    
T  154005 ccttatgaactcttcatcagaacgttctgatcaactctctgatcaacattctgaacaaactt 154066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 234889 - 234988
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  234889 cttctgaactctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 234988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 146357 - 146233
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| || || |||||||||||||||||||| ||||||||||| | | ||||||||         |||||||||||| ||||||||||||||||||    
T  146357 gatagatccattcaaatgtacttttctggacctttaattcatgtcaaatgtgcttgcatg---------ttcttgatgaatatgggttgcttatgaacaa 146267  T
Q  119 ccttctgaactatcattagaacgttctgatcaac 152  Q
    | ||| ||||| |||| |||||||||||||||||    
T  146266 ctttcggaactctcatcagaacgttctgatcaac 146233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 18425 - 18225
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  18425 gatagatccatgcagatgaacttttctagaccttttattcatgtcaagtatgcttgcatgttcttcacgttcttgatgaatctgggttgcttatgaacaa 18326  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    |||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||    
T  18325 ccttctgaacttacatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactccagaattagttcatggatttaatgtccttt 18226  T
Q  218 g 218  Q
    |    
T  18225 g 18225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 23039 - 22851
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23039 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtgtacttgcatgttcttcatgttcttgatgaatctgggttgcttatgaacaa 22940  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtccttt 217  Q
    || ||||||||||||| ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  22939 ccgtctgaactatcatcagaacgttctgatcaactct------------ctgaactaactttctgaacttcagaattagttcatggattcaatgtccttt 22852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 24195 - 24350
Alignment:
Q  19 gatagatctatgcagatgtacttttctggaccttttattcatgtcaagtttacttgcatgctcttcatgttcttgatgaatctgggttgcttatgaacaa 118  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||| ||    
T  24195 gatagatccatgcagatgtgcttttctggaccttttattcatgtcaagtgtacttgcatgttcttcacgtttttgatgaatctgggttgcttatgaataa 24294  T
Q  119 ccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaact 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24295 ccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaact 24350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 57624 - 57757
Alignment:
Q  88 ttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaact 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  57624 ttcttgatgaatctgggttgcttatgaacaaccttctgaactatcatcagaacgttctgatcaactctctgatcaacattctgaactaactttctgaact 57723  T
Q  188 tcagaattagttcatcga-tcaatgtcctttgct 220  Q
    ||||||||||||||| || |||||||||||||||    
T  57724 tcagaattagttcatggattcaatgtcctttgct 57757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 58774 - 58873
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  58774 cttctgaactatcatcagaacgttctgatcaactttctgatcaacattctaaactaactttctgaacttcagaattagttcatggattcaatgtcctttg 58873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 24342 - 24384
Alignment:
Q  179 ttctgaacttcagaattagttcatcga-tcaatgtcctttgct 220  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  24342 ttctgaacttcagaattagttcatggattcaatgtcctttgct 24384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 67075 - 67116
Alignment:
Q  178 tttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  67075 tttctgaacttcagaattagttcatggattcaatgtcctttg 67116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 10967 - 10795
Alignment:
Q  32 agatgtacttttctggaccttttattcatgtcaagtttac-ttgcatgctcttcatgttcttgatgaatctgggtt-gcttatgaacaaccttctgaact 129  Q
    ||||||||||| |||||| ||||||||||||||  | ||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  10967 agatgtactttactggacattttattcatgtcacatgtacgttgcatgttcttcatgttcttgatgattctgggtttgcttatgaacaaccttctgaact 10868  T
Q  130 atcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
     |||| | |||||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  10867 ttcatcaaaacgttctgatcaattcactgataaacattctgaactaattttatgaacttcagaattagttcat 10795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1468 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1468
Description:

Target: scaffold1468; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 936 - 801
Alignment:
Q  84 catgttcttgatgaatctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctg 183  Q
    |||||||||||||  |  || ||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  936 catgttcttgatgttttgggtttgcttatgaacaaccttctgaattatcatcagaacgttctgatccactctttgatcaacattctgaactaactttctg 837  T
Q  184 aacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||| ||||||||||||| || |||||||||||||    
T  836 aactttagaattagttcatggattcaatgtcctttg 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 33332 - 33448
Alignment:
Q  104 gttgcttatgaacaaccttctgaactatcattagaacgttctgatcaa-ctctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33332 gttgcttctgaacaaccttctgagctctcatcagaacgttctgatcaaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 33431  T
Q  203 cga-tcaatgtcctttg 218  Q
     || |||||||||||||    
T  33432 ggattcaatgtcctttg 33448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 8557 - 8656
Alignment:
Q  120 cttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  8557 cttctgagctctcatcagaacgttctgatcaactttctgatcaacattctgaactaactttctgaactttagaattagttcatggattcaatgtcctttg 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 9825 - 9761
Alignment:
Q  155 tctgatcaacattctgaactaactttctgaacttcagaattagttcatcga-tcaatgtcctttg 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  9825 tctgatcaacattctgaactaactttctgaacttcagagttagttcatggattcaatgtcctttg 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 9866 - 9816
Alignment:
Q  102 gggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaac 152  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||    
T  9866 gggttgcttctgaacgaccttctgaactctcatcagaacgttctgatcaac 9816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 9953 - 9911
Alignment:
Q  87 gttcttgatgaatctgggttgcttatgaacaaccttctgaact 129  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  9953 gttcttgataaatctgggttgcttctgaacaaccttctgaact 9911  T

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Target: scaffold1705 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1705
Description:

Target: scaffold1705; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 234 - 127
Alignment:
Q  100 ctgggttgcttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagtt 199  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||||||             |||||||| ||||||||||||||||||||||||||    
T  234 ctgggttgcttctgaacaaccttctgaactctcatcagaacgttctgatcaag------------attctgaattaactttctgaacttcagaattagtt 147  T
Q  200 catcga-tcaatgtcctttg 218  Q
    ||| || |||||||||||||    
T  146 catggattcaatgtcctttg 127  T

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Target: scaffold0406 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 14976 - 14903
Alignment:
Q  109 ttatgaacaaccttctgaactatcattagaacgttctgatcaactctctgatcaacattctgaactaactttctg 183  Q
    ||||||||||||||||||||| |  |  |||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  14976 ttatgaacaaccttctgaactttgctg-gaacattctgatcaactcactgatcaacattctgaattaactttctg 14903  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 13381 - 13325
Alignment:
Q  145 tgatcaactctctgatcaacattctgaactaactttctgaacttcagaattagttcat 202  Q
    |||||||||| || | ||||||||| |||||||||||||||| ||||| |||||||||    
T  13381 tgatcaactcccttagcaacattctaaactaactttctgaac-tcagagttagttcat 13325  T

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