View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_143 (Length: 228)

Name: NF4445_low_143
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_143
NF4445_low_143
[»] chr5 (5 HSPs)
chr5 (78-211)||(33543679-33543817)
chr5 (129-211)||(33361261-33361343)
chr5 (20-69)||(33355734-33355783)
chr5 (20-69)||(33543806-33543855)
chr5 (78-137)||(33355772-33355836)
[»] chr3 (1 HSPs)
chr3 (86-152)||(36243872-36243936)
[»] chr4 (1 HSPs)
chr4 (127-164)||(23438951-23438988)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 33543817 - 33543679
Alignment:
Q  78 aaagacgacattgtaatgagcttggttatatca-----atctatgtcaaagacccttttggttatatctccttattcccctgtcaaagacatcttaaatt 172  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543817 aaagacgacattgtaatgagcttggttatatcatatcaatctatgtcaaagacccttttggttatatctccttattcccctgtcaaagacatcttaaatt 33543718  T
Q  173 tgttaatgttttacggaatggaaaaactaactttgttag 211  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  33543717 tgtttaagttttacggaatggaaaaactaactttgttag 33543679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 33361261 - 33361343
Alignment:
Q  129 tttggttatatctccttattcccctgtcaaagacatcttaaatttgttaatgttttacggaatggaaaaactaactttgttag 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33361261 tttggctatatctccttattcccctgtcaaagacatcttaaatttgttaaagttttacggaatggaaaaactaactttgttag 33361343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 33355734 - 33355783
Alignment:
Q  20 atgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33355734 atgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 33355783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 33543855 - 33543806
Alignment:
Q  20 atgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543855 atgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 33543806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 33355772 - 33355836
Alignment:
Q  78 aaagacgacattgtaatgagcttggtt-----atatcaatctatgtcaaagacccttttggttat 137  Q
    |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  33355772 aaagacgacattgtaatgagcttggttatatcatatcaatctatgtcaaagacccttttggttat 33355836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 36243936 - 36243872
Alignment:
Q  86 cattgtaatgagcttggttatatcaatctatgtcaaagacccttttggttatatctccttattcccc 152  Q
    |||||||||| | ||||||||||||||||  || |||||||| ||||||||||||||||| ||||||    
T  36243936 cattgtaatgggtttggttatatcaatct--gtaaaagacccctttggttatatctccttgttcccc 36243872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 23438951 - 23438988
Alignment:
Q  127 cttttggttatatctccttattcccctgtcaaagacat 164  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  23438951 cttttggtcatatctccttattcccatgtcaaagacat 23438988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University