View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_15 (Length: 558)
Name: NF4445_low_15
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Complemental strand, 16195620 - 16195092
Alignment:
| Q |
11 |
catcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccacttcataaggagacttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16195620 |
catcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccacttcaaaaggagacttt |
16195521 |
T |
|
| Q |
111 |
ccaccagcacaagtgagttctcttggaactttgtcaagcatttcaatgttataacttggccatgcattcatcaaaaatagaaaagggtccaaacatttta |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16195520 |
ccaccagcacaagtgagttcttttggaactttatcaagcatttcaatgttataacttggccatggattcatcaaaaatagaaaagggtccaaacatttta |
16195421 |
T |
|
| Q |
211 |
atccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtgaactaaatctcaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||| || || |
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| T |
16195420 |
atccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtgaactaaaccttaa |
16195321 |
T |
|
| Q |
311 |
tagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattgtttccctatcttgttctctgtctctt |
410 |
Q |
| |
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|| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16195320 |
taaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatcttgttctctgtctctt |
16195221 |
T |
|
| Q |
411 |
gtcaaactcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaa |
510 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195220 |
gtcaaactcattgtccgaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaa |
16195121 |
T |
|
| Q |
511 |
caggatctaacaaagtcctatgtgtacaa |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
16195120 |
caggatctaacaaagtcctatgtgtacaa |
16195092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 16147315 - 16147843
Alignment:
| Q |
11 |
catcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccacttcataaggagacttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| || |||||||||| ||| ||| | |||||||||| |||||||||| ||||||| ||| |
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| T |
16147315 |
catcatatatttatccctccttgtaatatttgtacactcaaaccctaaagcatcacccaactctctttgtatataattagccacttcaaaaggagatttt |
16147414 |
T |
|
| Q |
111 |
ccaccagcacaagtgagttctcttggaactttgtcaagcatttcaatgttataacttggccatgcattcatcaaaaatagaaaagggtccaaacatttta |
210 |
Q |
| |
|
||||||||||||||||||||| |||| || || ||||| | |||||| |||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
16147415 |
ccaccagcacaagtgagttcttttggtaccttttcaagtacttcaatattataactaggccatggattcatcaaaaatagaaaagagtccaaacatttta |
16147514 |
T |
|
| Q |
211 |
atccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtgaactaaatctcaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || || |
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| T |
16147515 |
atccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtgaactaaaccttaa |
16147614 |
T |
|
| Q |
311 |
tagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattgtttccctatcttgttctctgtctctt |
410 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||||| || ||| |
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|
| T |
16147615 |
taaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctatcttgttctctatccctt |
16147714 |
T |
|
| Q |
411 |
gtcaaactcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaa |
510 |
Q |
| |
|
|| |||||||| ||| |||| |||| | || |||||||||||||||| ||| ||||| || | ||||||||||||| ||||||||||||||||| |
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| T |
16147715 |
gttaaactcatcgtcttaatcggagacatgatctccgacactttgcttaagctataagttaccgttgttaaaggttttctcaaactcatgctaagaaaaa |
16147814 |
T |
|
| Q |
511 |
caggatctaacaaagtcctatgtgtacaa |
539 |
Q |
| |
|
|||||||||| || ||||||||||||||| |
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|
| T |
16147815 |
caggatctaataatgtcctatgtgtacaa |
16147843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 39975537 - 39975938
Alignment:
| Q |
11 |
catcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccacttcataaggagacttt |
110 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| || |||||||| | ||||||||||| ||||| |||||||||||||| |||||||||| | |||||| |
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|
| T |
39975537 |
catcatatacttatccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagccacttcaacacttgacttt |
39975636 |
T |
|
| Q |
111 |
ccaccagcacaagtgagttctcttggaactttgtcaagcatttcaatgttataacttggccatgcattcatcaaaaatagaaaagggtccaaacatttta |
210 |
Q |
| |
|
|| |||||||| || |||||| | || || || |||| |||| ||| | |||||||||| | ||||||||| || | || ||| |||||||| || | |
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|
| T |
39975637 |
cctccagcacatgtaagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggattcatcaagaaaaaaataggatccaaacacttca |
39975736 |
T |
|
| Q |
211 |
atccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtgaactaaatctcaa |
310 |
Q |
| |
|
|||| || ||||| || |||||||||| || |||| || |||||| |||||||| || ||||||| || | |||||||| | ||||||||| || || |
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|
| T |
39975737 |
atccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatgaactaaaccttaa |
39975836 |
T |
|
| Q |
311 |
tagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattgtttccctatcttgttctctgtctctt |
410 |
Q |
| |
|
| ||| || || ||||| ||||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||||||| | |||||||| |||||||||| |
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|
| T |
39975837 |
caaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttgttttctgtctctt |
39975936 |
T |
|
| Q |
411 |
gt |
412 |
Q |
| |
|
|| |
|
|
| T |
39975937 |
gt |
39975938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 346
Target Start/End: Original strand, 25552813 - 25552961
Alignment:
| Q |
198 |
tccaaacattttaatccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtg |
297 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| ||| || ||| ||| | ||| ||||||||||| ||||||| || |||||||| | | |
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|
| T |
25552813 |
tccaaacatttatacccactagctgttgttccataaaacatactaaccttaacatcaacagcaacaggaacaatatcatcagttagctcagcaaacaaag |
25552912 |
T |
|
| Q |
298 |
aactaaatctcaatagataaggctccctacaagttgttccttcaggaca |
346 |
Q |
| |
|
|||||| || | | ||||| || ||||||||||||||||| ||||| |
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|
| T |
25552913 |
gactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 4470494 - 4470552
Alignment:
| Q |
288 |
gcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggaca |
346 |
Q |
| |
|
|||||||| | |||||| ||||||||| | |||||||||||||| |||||||| ||||| |
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|
| T |
4470494 |
gcaaaaagagcactaaacctcaatagaaatggctccctacaagtcgttccttccggaca |
4470552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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