View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_150 (Length: 211)
Name: NF4445_low_150
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_150 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 39877136 - 39876943
Alignment:
| Q |
1 |
tttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaa |
100 |
Q |
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| T |
39877136 |
tttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaa |
39877037 |
T |
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| Q |
101 |
gattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagtcccgttgatcaaatctgtg |
194 |
Q |
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| T |
39877036 |
gattggactcagctcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagtcccgttgatcaaatctgtg |
39876943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 44780371 - 44780201
Alignment:
| Q |
1 |
tttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44780371 |
tttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaa |
44780272 |
T |
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| Q |
101 |
gattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttt |
171 |
Q |
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| T |
44780271 |
gattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggagcttt |
44780201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 2898760 - 2898885
Alignment:
| Q |
5 |
aggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaagatt |
104 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2898760 |
aggactcatgacttacttccgagaggcaactgtacatactcaagagttgttggatttgcttgtcaaatgtgaaaataaaattcagacccgtatcaagata |
2898859 |
T |
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| Q |
105 |
ggactcaactcaaagatgcctagcag |
130 |
Q |
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| T |
2898860 |
ggactcaactcaaagatgcctagcag |
2898885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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