View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_17 (Length: 548)
Name: NF4445_low_17
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 31 - 420
Target Start/End: Original strand, 31759077 - 31759466
Alignment:
| Q |
31 |
cacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaacccctaccgc |
130 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31759077 |
cacgtgctgcctgactttttgggatattgagcagcaaggaacatgaaagttgtgctacaaagatggtctgagacattttgagtgagaaaacccctaccac |
31759176 |
T |
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| Q |
131 |
taaatccacaactgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattttgctcgtccacgcaacaactta |
230 |
Q |
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| T |
31759177 |
tgaatccacaacagatcctttccatatagaaaattgtatgtatccttgtatgggatgcattcttgcaataaatgattctgatcgtccacgaaacaactta |
31759276 |
T |
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| Q |
231 |
cgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatcagggtttaaatctgaaagtaaaagcttccatactttattagtctcct |
330 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
31759277 |
cgttcttcttcccaccatttggccttgtcttcatttgttccatcaaccccatcagggtttaaatatgaaagtaaaagcttccgtactttattagtttcct |
31759376 |
T |
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| Q |
331 |
catcaaggtcaacattagcatgctgnnnnnnnacgggatcatatgagccttgaaacagaacaagtgcattttgctcatatacaacaatgt |
420 |
Q |
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| T |
31759377 |
catcaaggtcaacattagcatgttgttttttgacgggatcagatgagccttgaaacagaacaagtgcattttgctcatatacaacaatgt |
31759466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 31754186 - 31754399
Alignment:
| Q |
26 |
ctttgcacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaa-cccc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
31754186 |
ctttgcacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagcaagaaagatggtccgagacatgttgagtgagaaaaacccc |
31754285 |
T |
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| Q |
125 |
taccgctaaatccacaactgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattttgctcgtccacgcaac |
224 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31754286 |
taccactaaatccacaattgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattctgctcgtccacgcaac |
31754385 |
T |
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| Q |
225 |
aacttacgttcttc |
238 |
Q |
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||||||| |||||| |
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| T |
31754386 |
aacttacattcttc |
31754399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 536
Target Start/End: Original strand, 31759491 - 31759532
Alignment:
| Q |
495 |
tccgtatttttccacgtattgtatctaacttttggtgatgat |
536 |
Q |
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| T |
31759491 |
tccgtatttttccacgtattgtatctaacttttggtgatgat |
31759532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 42830637 - 42830542
Alignment:
| Q |
42 |
tgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaacccctaccgctaaatccac |
139 |
Q |
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||||||| ||||||| ||||| ||||||||||||| || || || ||||||||||| |||||| ||||||||||||| | ||||| || ||||||| |
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| T |
42830637 |
tgactttaggggaaatcgagcaacaagggacatgaatgcagaactggaaagatggtctgagaca--ttgagtgagaaaaactctaccactgaatccac |
42830542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 42830441 - 42830401
Alignment:
| Q |
242 |
ccaccatttggcgttgtcttcatttgttccatcaatcccat |
282 |
Q |
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| T |
42830441 |
ccaccatttggccttgtcttcatctgttccatcaaccccat |
42830401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 184 - 343
Target Start/End: Original strand, 26749650 - 26749809
Alignment:
| Q |
184 |
gatgcattcgtgcaataaatgattttgctcgtccacgcaacaacttacgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatc |
283 |
Q |
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|||||||||||||||||||||| | |||||| ||||| |||| ||||||||||||| |||||||||||| || ||||||| ||||||||||| |||||| |
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| T |
26749650 |
gatgcattcgtgcaataaatgagtctgctcgcccacggaacactttacgttcttcttcccaccatttggccttttcttcatctgttccatcaaccccatc |
26749749 |
T |
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| Q |
284 |
agggtttaaatctgaaagtaaaagcttccatactttattagtctcctcatcaaggtcaac |
343 |
Q |
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| | |||| |||| | || ||||||||||| ||| ||| |||||||||||| |||||||| |
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| T |
26749750 |
atgatttatatctaacagcaaaagcttccacactctatcagtctcctcatctaggtcaac |
26749809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 26749460 - 26749537
Alignment:
| Q |
88 |
gaaagatggtccgagacattttgagtgag-aaaacccctaccgctaaatccacaactgatcctttccatctagaaaat |
164 |
Q |
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| T |
26749460 |
gaaagatggtccgtgacattttgagtgaggaaaactcctacaactgaatccacaactgatcctttccatcgagaaaat |
26749537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 26749313 - 26749365
Alignment:
| Q |
34 |
gtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagct |
86 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
26749313 |
gtgctgcctgactttttgggaaaccgagcagcaagggacatgaacgcagagct |
26749365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 348
Target Start/End: Complemental strand, 41978271 - 41978107
Alignment:
| Q |
184 |
gatgcattcgtgcaataaatgattttgctcgtccacgcaacaacttacgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatc |
283 |
Q |
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||||||| |||||||||||||| | ||||| ||| || || | || ||||| | || |||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
41978271 |
gatgcatccgtgcaataaatgactctgctcttcctcggaaaacatttcgttcattttcccaccatttggccttgtcttcatctgttccatcaaccccatg |
41978172 |
T |
|
| Q |
284 |
agggtttaaatctgaaagtaaaagcttccatactttattagtctcctcatcaaggtcaacattag |
348 |
Q |
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| T |
41978171 |
actatttatatccaacatcagaagcttccacactttattggtttcctcatcaagatcaactttag |
41978107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 41978652 - 41978573
Alignment:
| Q |
85 |
ctagaaagatggtccgagacattttgagtgag-aaaacccctaccgctaaatccacaactgatcctttccatctagaaaa |
163 |
Q |
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||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||||| |||||||||||||||| |||||| |
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| T |
41978652 |
ctagatagatggtctgagacattttgagtgagaaaaactccaaccaccgaatccaccactgatcctttccatcgagaaaa |
41978573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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