View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_18 (Length: 532)
Name: NF4445_low_18
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_18 |
 | |
|
| [»] scaffold1487 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
| [»] scaffold0265 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 27667091 - 27666587
Alignment:
| Q |
18 |
agaataagatgaatgcccttaagtgacatatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaac-caattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27667091 |
agaataagatgaatgcccttaagtgacatatatatgaaattaatctgaatgaaattaaatcacaaagaatgtattccccttacatatcaaaaatcaattc |
27666992 |
T |
|
| Q |
117 |
aatcatataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagtccaagcgccgcaacttatattgtgaaagtgattctataagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27666991 |
aatcatataagttatttgtgtaagaatatatatgaacgagagaaagagaggacgagtccaagcgccgcaacttatattgtgaaagtgattctataagagc |
27666892 |
T |
|
| Q |
217 |
aaatttataagaagtttaaaggaggagattttggtattaggttatgtttttcagttataattttttagggtcagtccaacatatattcaggcctagttgc |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27666891 |
aaatttttaagaagtttaaaggaggagattttggtattaggttatgtttttcggttataattttttagggtcagcccaacatatattcaggcctagttgc |
27666792 |
T |
|
| Q |
317 |
aaactagaaaagaaaattgctcttcccccctttcacttttgctcattccccaccgctgagtcaacaaaaagagtatagctactcattgtcatggtaacct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
27666791 |
aaactagaaaagaaaattgctcttcccccctttcacttttgctcatt-cccaccgctgagtcaacaaaaagagtatagcaactcattgtcatggtaacat |
27666693 |
T |
|
| Q |
417 |
tacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatctcttcaatgcttgtgctccttgttccttaaggatctc |
516 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
27666692 |
tacaaggagaaaagaaaagatgaaatggaagcaagccttgatgtctcaatgatcttgtgaatctcttcaatccttgtgctccttgttccttaagggtctc |
27666593 |
T |
|
| Q |
517 |
tctgtg |
522 |
Q |
| |
|
|||||| |
|
|
| T |
27666592 |
tctgtg |
27666587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 27674375 - 27674712
Alignment:
| Q |
19 |
gaataagatgaatgcccttaagtgacatatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
27674375 |
gaataagatgaatgcccttaagtgacatatatatgaaattaatttgaatgaaattaaatcacaaagaatgtattccc-ttacgtatcaaaatcaattcaa |
27674473 |
T |
|
| Q |
119 |
tcatataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagt-ccaagcgccgcaacttatattgtgaaagtgattctataagagca |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||||| |||||| | |
|
|
| T |
27674474 |
ttatataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagtcccaagcgccgc-gcttatact------ctgattc--taagagaa |
27674564 |
T |
|
| Q |
218 |
aatttataagaagtttaa---aggaggagattttggtattaggttatgtttttcagttataattttttagggtcagtccaacatatattcaggcctagtt |
314 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||| |||||||| ||||| |||||||||||| | ||||||||||| ||||| |||| |
|
|
| T |
27674565 |
aatttataaggagttcaaaggaggaggagattttggtattaggttaagtttttcaattatatttttttagggtcggcccaacatatatctaggcccagtt |
27674664 |
T |
|
| Q |
315 |
gcaaactagaaaagaaaattgctcttcccccctttcacttttgctcattccc |
366 |
Q |
| |
|
||||| ||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
27674665 |
gcaaaatagaaaagaaaattgatatt----cctttcacttttgctcattccc |
27674712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 378 - 522
Target Start/End: Complemental strand, 44245559 - 44245415
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
44245559 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaaggcatgatgtctcaatgatcttgtgaa |
44245460 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|| ||||||| ||||||| ||||| ||||||| | |||||||||| |
|
|
| T |
44245459 |
tcccttcaatccttgtgccccttgctccttaatggtctctctgtg |
44245415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 378 - 519
Target Start/End: Complemental strand, 2268003 - 2267862
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
2268003 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatagaagcaagccatgatgtctcaatgatcttgtgaa |
2267904 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctct |
519 |
Q |
| |
|
|| ||||||| ||||||| ||||| ||||||| | ||||||| |
|
|
| T |
2267903 |
tcccttcaatccttgtgccccttgctccttaatggtctctct |
2267862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 38657815 - 38657946
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
38657815 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaagg----------agatggaataaaagcaagccatgatgtatcaatgatcttgtgaa |
38657904 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctct |
519 |
Q |
| |
|
|| ||||||| |||||| ||||| ||||||| | ||||||| |
|
|
| T |
38657905 |
tcccttcaatctttgtgccccttgctccttaatggtctctct |
38657946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 309
Target Start/End: Original strand, 27655743 - 27656004
Alignment:
| Q |
43 |
acatatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaatcatataagttatttgtgtaagaa |
142 |
Q |
| |
|
|||||||||||||||| |||| | | ||| |||||| ||||||||||| || |||||||||||||| || |||| ||| || | || ||||| || | |
|
|
| T |
27655743 |
acatatatatgaaattgattttatcggaatgaaattacaaagaatgtatccctcttacatatcaaaatca---caatgatacaaatcatgtgtgtgagca |
27655839 |
T |
|
| Q |
143 |
tatatatgaacgagacaaagagaggatgagtccaagcgccgcaacttatattgtgaaagtgattctataagagcaaatttataagaagtttaaaggagga |
242 |
Q |
| |
|
|||||||| | | ||| ||||||||||| | ||||||| || | |||| ||||||||| ||| ||| |||||||||||| |||| | |||| || |
|
|
| T |
27655840 |
tatatatggatgggacgaagagaggatggatgcaagcgctgccgatagtattatgaaagtgaaccta--agaacaaatttataaggagttcataggaaga |
27655937 |
T |
|
| Q |
243 |
gattttggtattaggttatgtttttcagttataattttttagggtcagtccaacatatattcaggcc |
309 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||| |||| ||||||| |||||| ||||| ||||| |
|
|
| T |
27655938 |
gattttgggattaggttaagtttatcagttatatattttatgggtcagcccaacacatattaaggcc |
27656004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 266
Target Start/End: Original strand, 27652171 - 27652348
Alignment:
| Q |
85 |
aatgtattccccttacatatcaaaaccaattcaatcatataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagtccaagcgccgc |
184 |
Q |
| |
|
||||||| |||||||||||||||| | | ||||||||| || | || | |||||| |||||||||||| | | ||||||||||||| |||||||||| |
|
|
| T |
27652171 |
aatgtatctcccttacatatcaaaatctactcaatcatacaaataatgtttgtaagcatatatatgaac--aaaatagagaggatgagtgcaagcgccgc |
27652268 |
T |
|
| Q |
185 |
aacttatattgtgaaagtgattctataagagcaaatttataagaagtttaaaggaggagattttggtattaggttatgtttt |
266 |
Q |
| |
|
| |||||||||||||| | ||| | |||||||||||| |||| | |||||||||| ||||||||| |||| ||||| |
|
|
| T |
27652269 |
tgatcgtattgtgaaagtgaacc--taacaacaaatttataaggagttcataggaggagatgttggtattatgttaagtttt |
27652348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 520
Target Start/End: Complemental strand, 5063655 - 5063513
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggaga-aaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtga |
476 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||| || | ||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
5063655 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaagaagacgaagagaa-aaggaat--aaccaagccatgatgtctcaatgatcttgcaa |
5063559 |
T |
|
| Q |
477 |
at-ctcttcaatgcttgt-gctccttgttccttaaggatctctctg |
520 |
Q |
| |
|
| |||| |||| ||||| |||||||||||||| | | |||||||| |
|
|
| T |
5063558 |
gtcctctccaatccttgtagctccttgttccttgatgttctctctg |
5063513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 9906559 - 9906510
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaa |
427 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
9906559 |
caacaaaaagagtctacatactcattgtcatggtaaccttacaaggagaa |
9906510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 27652465 - 27652589
Alignment:
| Q |
46 |
tatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaatcatataagttatttgtgtaagaatat |
145 |
Q |
| |
|
||||||| |||| ||| || |||||| |||||| ||||||||||| || |||||||||||||| || || ||||||| || | | ||||| || |||| |
|
|
| T |
27652465 |
tatatatataattgattcgactgaaatgaaattacaaagaatgtatccctcttacatatcaaaatcacttaaatcatacaaataaagtgtgtgagcatat |
27652564 |
T |
|
| Q |
146 |
atatgaacgagacaaagagaggatg |
170 |
Q |
| |
|
||||| | | ||| ||||||||||| |
|
|
| T |
27652565 |
atatggatgggacgaagagaggatg |
27652589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 378 - 522
Target Start/End: Original strand, 9702309 - 9702453
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9702309 |
caacaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
9702408 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
9702409 |
tcccttcaatccttgtgctccttgctcctttaggatctctctgtg |
9702453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 378 - 522
Target Start/End: Original strand, 43364818 - 43364962
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43364818 |
caacaaaaaaagtctagctactcattgttatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
43364917 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
43364918 |
tcccttcaatccttgtgctccttgctcctttagggtctctctgtg |
43364962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 378 - 522
Target Start/End: Complemental strand, 41454565 - 41454421
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41454565 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
41454466 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|| ||||||| ||||||| ||||| || || | | |||||||||| |
|
|
| T |
41454465 |
tcccttcaatccttgtgccccttgctcattgaagttctctctgtg |
41454421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 378 - 521
Target Start/End: Original strand, 37522370 - 37522513
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37522370 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaataagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
37522469 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgt |
521 |
Q |
| |
|
|| ||||||| ||||||| ||||| ||||||| | ||||||||| |
|
|
| T |
37522470 |
tcccttcaatccttgtgccccttgctccttaatggtctctctgt |
37522513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 510
Target Start/End: Original strand, 28443021 - 28443151
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
28443021 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
28443118 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||| |
|
|
| T |
28443119 |
ttccttcaatccttgtgctccttgctccttaag |
28443151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 378 - 510
Target Start/End: Original strand, 41543035 - 41543165
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatctt-gtga |
476 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||| | || |
|
|
| T |
41543035 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttagaga |
41543132 |
T |
|
| Q |
477 |
atctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|| ||||||| ||||||||||||| |||||||| |
|
|
| T |
41543133 |
ttc-cttcaatccttgtgctccttgctccttaag |
41543165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 14685791 - 14686041
Alignment:
| Q |
24 |
agatgaatgccctta-agtgacatatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaatcat |
122 |
Q |
| |
|
|||||||||||| || | ||| |||||||| |||| |||||| |||||| |||| | ||||||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
14685791 |
agatgaatgcccatagattgaaatatatatagaattgatttgattgaaatgaaatcacaaagaatgtatctcccttacatatcaaaatcaattcaatgtt |
14685890 |
T |
|
| Q |
123 |
ataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagtccaagcgccgcaacttatattgtgaaagtgattctataagagcaaattt |
222 |
Q |
| |
|
|| | || ||||| ||||| |||||||| |||| ||||||||||| ||| |||||||| | | || | ||||||| | | ||| | | |||| |
|
|
| T |
14685891 |
gcaaataatatgtgtgagaatttatatgaaggagataaagagaggatagatccgagcgccgctaatcattctatgaaagtaaacc--taacaacggattt |
14685988 |
T |
|
| Q |
223 |
ataagaagtttaaaggaggagattttggtattaggttatgtttttcagttata |
275 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||| | |||| ||||||| |
|
|
| T |
14685989 |
ataagaagttcataggagcagattttggtattaggttaaggttttaagttata |
14686041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 48455958 - 48456047
Alignment:
| Q |
382 |
aaaaagagtatagctactcattgtcatggtaaccttacaaggagaa-aagaaaagatggaatggaagcaagccttgatgtctcaatgatcttg |
473 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| |||| || | ||||| || |||||| ||||||||||||||||||| |
|
|
| T |
48455958 |
aaaaagagtttagctacacattgtcatggtaaccttacaaggagaagaagagaa-aaggaat--aaccaagccatgatgtctcaatgatcttg |
48456047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 14677884 - 14677981
Alignment:
| Q |
24 |
agatgaatgccctta-agtga-catatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaat |
119 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| |||| |||| | |||||| |||| ||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14677884 |
agatgaatgcccttagattgaacatatatatagaattgatttaactgaaatgaaatcataaagaatgtatctcccttacatatcaaaatcaaatcaat |
14677981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 378 - 522
Target Start/End: Original strand, 13568548 - 13568692
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13568548 |
caacaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
13568647 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13568648 |
tcccttcaatccttgtgctccttgctcctttaggatctctctgtg |
13568692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 378 - 518
Target Start/End: Complemental strand, 54301255 - 54301115
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54301255 |
caacaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
54301156 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctc |
518 |
Q |
| |
|
|| ||||||| ||||||| ||||| ||||||| | |||||| |
|
|
| T |
54301155 |
tcccttcaatccttgtgccccttgctccttaatggtctctc |
54301115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 667320 - 667197
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
667320 |
caacaaaaagagtttagctactcattgtcattgtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
667221 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttg |
501 |
Q |
| |
|
|| ||||||| ||||||| ||||| |
|
|
| T |
667220 |
tcccttcaatccttgtgccccttg |
667197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 378 - 520
Target Start/End: Complemental strand, 40976288 - 40976146
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40976288 |
caacaaaaagagtctaactactcattgtcatggtaaccttacaaagagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
40976189 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctctg |
520 |
Q |
| |
|
|| ||||||| ||| ||| ||||| ||||||| | |||||||| |
|
|
| T |
40976188 |
tcccttcaatccttctgccccttgctccttaatggtctctctg |
40976146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 42852971 - 42852839
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
42852971 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtcttaatgatcttggaga |
42852872 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||| |
|
|
| T |
42852871 |
tccgttcaatccttgtgctccttgctccttaag |
42852839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 522
Target Start/End: Complemental strand, 23543196 - 23543036
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagca----------------agccttgatgtc |
461 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
23543196 |
caacaaaaagagtctagctacttattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatggaagcaagccatgatgtc |
23543097 |
T |
|
| Q |
462 |
tcaatgatcttgtgaatctcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| ||||||| | |||||||||| |
|
|
| T |
23543096 |
tcaatgatcttgtgaatcccttcaatgcttgtgccccttgctccttaatggtctctctgtg |
23543036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 18766257 - 18766398
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
18766257 |
caacaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaaaccatgatgtctcaatgatcttgcgaa |
18766356 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctct |
519 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| ||| ||||||| |
|
|
| T |
18766357 |
tcccttcaatccttgtgctccttgctcctttagggtctctct |
18766398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 378 - 487
Target Start/End: Original strand, 1051790 - 1051899
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
1051790 |
caacaaaaagagtttaactactcattgtcatggtaaccttacaaggagaaaagaagagatggaatagaagcaagccatgatgtctcaatgatcttgtgaa |
1051889 |
T |
|
| Q |
478 |
tctcttcaat |
487 |
Q |
| |
|
|| ||||||| |
|
|
| T |
1051890 |
tcccttcaat |
1051899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 14116016 - 14115886
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
14116016 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
14115919 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||| |
|
|
| T |
14115918 |
ttccttcaatccttgtgctccttgctccttaag |
14115886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 510
Target Start/End: Original strand, 24908996 - 24909126
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
24908996 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
24909093 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||| |
|
|
| T |
24909094 |
ttccttcaatccttgtgctccttgctccttaag |
24909126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 382 - 510
Target Start/End: Original strand, 7826568 - 7826694
Alignment:
| Q |
382 |
aaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatctc |
481 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| || | |
|
|
| T |
7826568 |
aaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggagattac |
7826665 |
T |
|
| Q |
482 |
ttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |
|
|
| T |
7826666 |
ttcaatccttgtgctccttgctccttaag |
7826694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 10806934 - 10806804
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
10806934 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
10806837 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| | ||||| ||||||||||||| |||||||| |
|
|
| T |
10806836 |
ttccctcaatccttgtgctccttgctccttaag |
10806804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 510
Target Start/End: Complemental strand, 14118208 - 14118080
Alignment:
| Q |
380 |
acaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatc |
479 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| || |
|
|
| T |
14118208 |
acaaaaatagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggagatt |
14118111 |
T |
|
| Q |
480 |
tcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |
|
|
| T |
14118110 |
ccttcaatccttgtgctccttgctccttaag |
14118080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 510
Target Start/End: Complemental strand, 14122166 - 14122038
Alignment:
| Q |
380 |
acaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatc |
479 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| || |
|
|
| T |
14122166 |
acaaaaatagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggagatt |
14122069 |
T |
|
| Q |
480 |
tcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |
|
|
| T |
14122068 |
ccttcaatccttgtgctccttgctccttaag |
14122038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 10800223 - 10800130
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttg |
473 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
10800223 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttg |
10800130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1487 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1487
Description:
Target: scaffold1487; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 380 - 522
Target Start/End: Complemental strand, 1737 - 1595
Alignment:
| Q |
380 |
acaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatc |
479 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1737 |
acaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaatc |
1638 |
T |
|
| Q |
480 |
tcttcaatgcttgtgctccttgttccttaaggatctctctgtg |
522 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
1637 |
ccttcaatcattgtgttcctttctcctttagggtctctctgtg |
1595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 4501687 - 4501804
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4501687 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
4501786 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgc |
495 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
4501787 |
tcccttcaatccttgtgc |
4501804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 378 - 516
Target Start/End: Original strand, 27901098 - 27901239
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagat---ggaatggaagcaagccttgatgtctcaatgatcttgt |
474 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27901098 |
caacaaaaagagtctagctactcattgtcatggtaaccttacaaggagaaaagaagagatcatggaatggaagcaagccatgatgtctcaatgatcttgt |
27901197 |
T |
|
| Q |
475 |
gaatctcttcaatgcttgtgctccttgttccttaaggatctc |
516 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||| ||| |||| |
|
|
| T |
27901198 |
gaatcccttcaatccttgtgctccttgctcctttagggtctc |
27901239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 4507012 - 4507129
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4507012 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatggaagcaagccattatgtctcaatgatcttgtgaa |
4507111 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgc |
495 |
Q |
| |
|
|| |||||| ||||||| |
|
|
| T |
4507112 |
tcctttcaatccttgtgc |
4507129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 510
Target Start/End: Original strand, 4675501 - 4675631
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
4675501 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
4675598 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||| |
|
|
| T |
4675599 |
ttccttcaatccttgtgctccttgctccttaag |
4675631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 520
Target Start/End: Original strand, 18867351 - 18867492
Alignment:
| Q |
377 |
tcaacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtga |
476 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
18867351 |
tcaacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaatagatgaaatg--agcaagccatgatgtctcaatgatcttggag |
18867448 |
T |
|
| Q |
477 |
atctcttcaatgcttgtgctccttgttccttaaggatctctctg |
520 |
Q |
| |
|
|| ||| ||| ||||||||||||| ||||| | | |||||||| |
|
|
| T |
18867449 |
attcctttaatccttgtgctccttgctcctttaagttctctctg |
18867492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 546492 - 546538
Alignment:
| Q |
383 |
aaaagagtatagctactcattgtcatggtaaccttacaaggagaaaa |
429 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
546492 |
aaaagtgtttagctactcattttcatggtaaccttacaaggagaaaa |
546538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 47294590 - 47294731
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
47294590 |
caacaaaaagagtttagctactcattgtcatggtaaccttacagggagaaaagaagagatggaatagaagcaagccatgatgtctcaatgatcctgtgaa |
47294689 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaaggatctctct |
519 |
Q |
| |
|
|| ||||||| ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
47294690 |
tcccttcaatccttgtgccccttgctccttaatgatctctct |
47294731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 9316531 - 9316632
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9316531 |
caacaaaaagagtctagctactcattgtcatggtaaccttataaggagaaaagaagagatggaatggaagcaagccatgatgtctcaatgatcttgtgaa |
9316630 |
T |
|
| Q |
478 |
tc |
479 |
Q |
| |
|
|| |
|
|
| T |
9316631 |
tc |
9316632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 410 - 522
Target Start/End: Original strand, 21818092 - 21818203
Alignment:
| Q |
410 |
gtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatctcttcaatgcttgtgctccttgttccttaa |
509 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||| |||||| ||||| | |
|
|
| T |
21818092 |
gtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgacgtctcaatgatcttgtgaatcccttcaatccttgtgatccttgctcctt-a |
21818190 |
T |
|
| Q |
510 |
ggatctctctgtg |
522 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
21818191 |
ggttctctctgtg |
21818203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 43102665 - 43102767
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatg-atcttgtga |
476 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||| | || ||||| | || | ||||||||||| |||||||| ||||||||| |
|
|
| T |
43102665 |
caacaaaaagagtttatctactcattgtcatggtaaccttacaaggagaagaaaagagatgaattgacatcaagccttgatttctcaatgaatcttgtga |
43102764 |
T |
|
| Q |
477 |
atc |
479 |
Q |
| |
|
||| |
|
|
| T |
43102765 |
atc |
43102767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 11345491 - 11345327
Alignment:
| Q |
94 |
cccttacatatcaaaaccaattcaatcatataagttatttgtgtaagaatatatatgaacgagacaaagagaggatgagtccaagcgccgcaacttatat |
193 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| ||| || ||||||| ||||||||||| ||||||||||||| | || | ||| |||||| || |||| |
|
|
| T |
11345491 |
cccttacatattaaaactaattaaatcatatgagtaatatgtgtaaacatatatatgaatgagacaaagagagaacgaatacaaacgccgctgctcatat |
11345392 |
T |
|
| Q |
194 |
tgtgaaagtgattctataagagcaaatttataagaagtttaaaggaggagattttggtattaggtta |
260 |
Q |
| |
|
|| |||||| | |||||||||||||||||| |||| | | ||||||||||| |||||||||| |
|
|
| T |
11345391 |
tgcacaagtgaacc--taagagcaaatttataaggagttcagacgaggagattttcatattaggtta |
11345327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 21815388 - 21815424
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaac |
414 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21815388 |
caacaaaaagagtctagatactcattgtcatggtaac |
21815424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 43670343 - 43670466
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
43670343 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggagaaaagaagagatggaatgaaagcaagtcatgatgtctcaatgatcttgtgaa |
43670442 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttg |
501 |
Q |
| |
|
|| ||||||| ||||||| ||||| |
|
|
| T |
43670443 |
tcccttcaatccttgtgccccttg |
43670466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 510
Target Start/End: Original strand, 33034324 - 33034455
Alignment:
| Q |
377 |
tcaacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtga |
476 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
33034324 |
tcaacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggag |
33034421 |
T |
|
| Q |
477 |
atctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|| ||||||| ||||||||||||| |||||||| |
|
|
| T |
33034422 |
attccttcaatccttgtgctccttgctccttaag |
33034455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 510
Target Start/End: Original strand, 44611818 - 44611948
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| | |
|
|
| T |
44611818 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggaga |
44611915 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||| |
|
|
| T |
44611916 |
ttacttcaatccttgtgctccttgctccttaag |
44611948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 22600486 - 22600618
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatg-atcttgtga |
476 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| || | || |||||| ||| | ||||||||||| |||||||| ||||||||| |
|
|
| T |
22600486 |
caacaaaaagagtttagctactcattgtcatggtaaccttacaaggaaaagaaaagagatgg-atgataccaagccttgatttctcaatgaatcttgtga |
22600584 |
T |
|
| Q |
477 |
atc--tcttcaatgcttgt--gctccttgttcct |
506 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |
|
|
| T |
22600585 |
atcctccttcaatccttgttagctccttgttcct |
22600618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 477
Target Start/End: Original strand, 28392784 - 28392887
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaa-aagaaa--agatggaatggaagcaagccttgatgtctcaatg-atcttg |
473 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||| || || |||||| |||||||||| | ||||||||||| |||||||| |||||| |
|
|
| T |
28392784 |
caacaaaaagagtttagttacgcattttcatggtaaccttacaaagataagaagaaaagagatggaatgacatcaagccttgatttctcaatgaatcttg |
28392883 |
T |
|
| Q |
474 |
tgaa |
477 |
Q |
| |
|
|||| |
|
|
| T |
28392884 |
tgaa |
28392887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 510
Target Start/End: Complemental strand, 2393 - 2262
Alignment:
| Q |
377 |
tcaacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtga |
476 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
2393 |
tcaacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatgtctcaatgatcttggag |
2296 |
T |
|
| Q |
477 |
atctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| |
|
|
| T |
2295 |
attccttcaatccttgtgctccttgttccttaag |
2262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 510
Target Start/End: Complemental strand, 8775 - 8644
Alignment:
| Q |
377 |
tcaacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtga |
476 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
8775 |
tcaacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagaaatgaaatg--agcaagccatgatgtctcaatgatcttggag |
8678 |
T |
|
| Q |
477 |
atctcttcaatgcttgtgctccttgttccttaag |
510 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| |
|
|
| T |
8677 |
attccttcaatccttgtgctccttgttccttaag |
8644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 410 - 522
Target Start/End: Complemental strand, 14717 - 14606
Alignment:
| Q |
410 |
gtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatctcttcaatgcttgtgctccttgttccttaa |
509 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||| |||||| ||||| | |
|
|
| T |
14717 |
gtaaccttacaaggagaaaagaagagatggaatggaagcaagccatgacgtctcaatgatcttgtgaatcccttcaatccttgtgatccttgctcctt-a |
14619 |
T |
|
| Q |
510 |
ggatctctctgtg |
522 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
14618 |
ggttctctctgtg |
14606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 17421 - 17385
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaac |
414 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
17421 |
caacaaaaagagtctagatactcattgtcatggtaac |
17385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 508
Target Start/End: Complemental strand, 9334800 - 9334672
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaa |
477 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||| | |
|
|
| T |
9334800 |
caacaaaaagagtttagctactcattttcatggtaaccttacaaggagaaaagaagagatgaaatg--tgcaagccatgatgtctcaatgatcttggaga |
9334703 |
T |
|
| Q |
478 |
tctcttcaatgcttgtgctccttgttcctta |
508 |
Q |
| |
|
|| ||||||| ||||||||||||| |||||| |
|
|
| T |
9334702 |
tcccttcaatccttgtgctccttgctcctta |
9334672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 410 - 522
Target Start/End: Original strand, 20899936 - 20900047
Alignment:
| Q |
410 |
gtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatgtctcaatgatcttgtgaatctcttcaatgcttgtgctccttgttccttaa |
509 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| || || ||| ||||| | |
|
|
| T |
20899936 |
gtaaccttacaaggagaaaggaagagatggaatggaagccagccatgatgtctcaatgatcttgtgaatctcttcaatccttatgatctttgatcctt-a |
20900034 |
T |
|
| Q |
510 |
ggatctctctgtg |
522 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
20900035 |
ggttctctctgtg |
20900047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 40820980 - 40820901
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaaaagaaaagatggaatggaagcaagccttgatg |
459 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| |
|
|
| T |
40820980 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaaaagaagagatgaaatg--agcaagccatgatg |
40820901 |
T |
|
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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 4693867 - 4693818
Alignment:
| Q |
378 |
caacaaaaagagtatagctactcattgtcatggtaaccttacaaggagaa |
427 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4693867 |
caacaaaaagagtttagctacacattgtcatggtaaccttacaaggagaa |
4693818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 17666452 - 17666355
Alignment:
| Q |
24 |
agatgaatgccctta-agtga-catatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaaccaattcaat |
119 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| |||| |||| | |||||| |||| ||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
17666452 |
agatgaatgcccttagattgaacatatatatagaattgatttaactgaaatgaaatcataaagaatgtatctcccttacatatcaaaatcaaatcaat |
17666355 |
T |
|
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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 17662146 - 17662090
Alignment:
| Q |
219 |
atttataagaagtttaaaggaggagattttggtattaggttatgtttttcagttata |
275 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||||| | |||| ||||||| |
|
|
| T |
17662146 |
atttataaggagtttataggagcagattttggtattaggttaaggttttaagttata |
17662090 |
T |
|
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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 17662321 - 17662255
Alignment:
| Q |
43 |
acatatatatgaaattaatttgaatgaaattaaattataaagaatgtattccccttacatatcaaaa |
109 |
Q |
| |
|
|||||||||| |||| |||||| |||||| |||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
17662321 |
acatatatatagaattgatttgattgaaatgaaatgataaagaatgtatctcccttgcatatcaaaa |
17662255 |
T |
|
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