View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_24 (Length: 492)
Name: NF4445_low_24
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 288 - 443
Target Start/End: Complemental strand, 31646591 - 31646436
Alignment:
| Q |
288 |
gttaaagccttaacatgtaacaataatatcaattatttaaaaattgtgatggtaacatttctcttatttttcccttaaagaaaaacatttctcttatttt |
387 |
Q |
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| T |
31646591 |
gttaaagccttaacatgtaacaataatatcaattatttaaaaattgtgatggtaacatttctcttatttttcccttaaagaaaatcatttctcttatttt |
31646492 |
T |
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| Q |
388 |
gattatggtcttgagcttcggggaaagaagcactatatttattagttttaatggga |
443 |
Q |
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| T |
31646491 |
gattatggtcttgagcttcggggaaagaagcactatatatattagttttaatggga |
31646436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31646878 - 31646683
Alignment:
| Q |
1 |
ttactttcgatactacgccatatttttaacaagacagttgtaaataatattatgtttccttgagttttggcctagtcctttaaaacaannnnnnnnnnnn |
100 |
Q |
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| T |
31646878 |
ttacttttgatattacgccagatttttaacaagatagttgtcaataatattatgttcccttgagttttggcttagtcctttaaaacaa-tttttctttct |
31646780 |
T |
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| Q |
101 |
nnnnnnnnnnataatatatt---ccctttgagtagtgttgtagatgaatgtgaaaagttgttgttgcagcctaacttatcctttgatacctctgtac |
194 |
Q |
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| T |
31646779 |
ttaatttttgataatatattattccctttgagtagtgttgtagatgaatgtgaaaagttgttgttgcagcctaacttatcttttgatacctctgtac |
31646683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 475
Target Start/End: Complemental strand, 31646416 - 31646385
Alignment:
| Q |
444 |
ggccaacgtcatgctgctgagaacacaatttt |
475 |
Q |
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| T |
31646416 |
ggccaacgtcatgctgctgagaacacaatttt |
31646385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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