View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_27 (Length: 458)
Name: NF4445_low_27
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 16195513 - 16195092
Alignment:
| Q |
18 |
cacaagtgagttctcttggaactttgtcaagcatttcaatgttataacttggccatgcattcatcaaaaatagaaaagggtccaaacattttaatccact |
117 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195513 |
cacaagtgagttcttttggaactttatcaagcatttcaatgttataacttggccatggattcatcaaaaatagaaaagggtccaaacattttaatccact |
16195414 |
T |
|
| Q |
118 |
agctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtgaactaaatctcaatagataa |
217 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||| || |||| |||| |
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| T |
16195413 |
agctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtgaactaaaccttaataaataa |
16195314 |
T |
|
| Q |
218 |
ggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattgtttccctatcttgttctctgtctcttgtcaaac |
317 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195313 |
ggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatcttgttctctgtctcttgtcaaac |
16195214 |
T |
|
| Q |
318 |
tcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaacaggatc |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195213 |
tcattgtccgaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaacaggatc |
16195114 |
T |
|
| Q |
418 |
taacaaagtcctatgtgtacaa |
439 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16195113 |
taacaaagtcctatgtgtacaa |
16195092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 16147422 - 16147843
Alignment:
| Q |
18 |
cacaagtgagttctcttggaactttgtcaagcatttcaatgttataacttggccatgcattcatcaaaaatagaaaagggtccaaacattttaatccact |
117 |
Q |
| |
|
|||||||||||||| |||| || || ||||| | |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
16147422 |
cacaagtgagttcttttggtaccttttcaagtacttcaatattataactaggccatggattcatcaaaaatagaaaagagtccaaacattttaatccact |
16147521 |
T |
|
| Q |
118 |
agctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtgaactaaatctcaatagataa |
217 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||| |
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| T |
16147522 |
agctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtgaactaaaccttaataaataa |
16147621 |
T |
|
| Q |
218 |
ggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattgtttccctatcttgttctctgtctcttgtcaaac |
317 |
Q |
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|| |||||||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
16147622 |
ggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctatcttgttctctatcccttgttaaac |
16147721 |
T |
|
| Q |
318 |
tcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcacacaactcaaaggttttctcagactcatgctaagaaaaacaggatc |
417 |
Q |
| |
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|||| ||| |||| |||| | || |||||||||||||||| ||| ||||| || | ||||||||||||| |||||||||||||||||||||||| |
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| T |
16147722 |
tcatcgtcttaatcggagacatgatctccgacactttgcttaagctataagttaccgttgttaaaggttttctcaaactcatgctaagaaaaacaggatc |
16147821 |
T |
|
| Q |
418 |
taacaaagtcctatgtgtacaa |
439 |
Q |
| |
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||| || ||||||||||||||| |
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| T |
16147822 |
taataatgtcctatgtgtacaa |
16147843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 312
Target Start/End: Original strand, 39975702 - 39975938
Alignment:
| Q |
76 |
attcatcaaaaatagaaaagggtccaaacattttaatccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctca |
175 |
Q |
| |
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||||||||| || | || ||| |||||||| || ||||| || ||||| || |||||||||| || |||| || |||||| |||||||| || |||||| |
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| T |
39975702 |
attcatcaagaaaaaaataggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctca |
39975801 |
T |
|
| Q |
176 |
tcagaaagttcagcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcc |
275 |
Q |
| |
|
| || | |||||||| | ||||||||| || || | ||| || || ||||| ||||||||||||||||| ||||| ||||||||||| ||||| | | |
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| T |
39975802 |
ttagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaact |
39975901 |
T |
|
| Q |
276 |
tttgcattgtttccctatcttgttctctgtctcttgt |
312 |
Q |
| |
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||||||||||||| | |||||||| |||||||||||| |
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| T |
39975902 |
tttgcattgtttcaccatcttgttttctgtctcttgt |
39975938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 25552813 - 25552961
Alignment:
| Q |
98 |
tccaaacattttaatccactagctgttgtaccataaaacaaactcacattagcattcatagccacaggaacaatctcatcagaaagttcagcaaaaagtg |
197 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| ||| || ||| ||| | ||| ||||||||||| ||||||| || |||||||| | | |
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|
| T |
25552813 |
tccaaacatttatacccactagctgttgttccataaaacatactaaccttaacatcaacagcaacaggaacaatatcatcagttagctcagcaaacaaag |
25552912 |
T |
|
| Q |
198 |
aactaaatctcaatagataaggctccctacaagttgttccttcaggaca |
246 |
Q |
| |
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|||||| || | | ||||| || ||||||||||||||||| ||||| |
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| T |
25552913 |
gactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 4470494 - 4470552
Alignment:
| Q |
188 |
gcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggaca |
246 |
Q |
| |
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|||||||| | |||||| ||||||||| | |||||||||||||| |||||||| ||||| |
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| T |
4470494 |
gcaaaaagagcactaaacctcaatagaaatggctccctacaagtcgttccttccggaca |
4470552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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