View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_29 (Length: 455)

Name: NF4445_low_29
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_29
NF4445_low_29
[»] chr4 (37 HSPs)
chr4 (19-173)||(48406895-48407049)
chr4 (230-338)||(48407106-48407214)
chr4 (230-333)||(22606201-22606304)
chr4 (73-160)||(38767764-38767851)
chr4 (73-165)||(52058285-52058377)
chr4 (51-165)||(22606393-22606507)
chr4 (230-330)||(30418237-30418338)
chr4 (230-338)||(38767945-38768053)
chr4 (54-165)||(28963901-28964012)
chr4 (51-165)||(30418430-30418545)
chr4 (230-338)||(53663471-53663579)
chr4 (230-338)||(39732964-39733072)
chr4 (230-338)||(50523707-50523815)
chr4 (71-160)||(53404149-53404238)
chr4 (230-338)||(45105960-45106068)
chr4 (232-338)||(49723936-49724042)
chr4 (230-330)||(28963712-28963813)
chr4 (73-141)||(49723757-49723825)
chr4 (230-338)||(53403952-53404055)
chr4 (230-330)||(8510312-8510411)
chr4 (100-160)||(51834286-51834346)
chr4 (262-336)||(29385882-29385956)
chr4 (82-160)||(53663673-53663751)
chr4 (230-315)||(26457265-26457350)
chr4 (82-159)||(45105789-45105866)
chr4 (81-146)||(28911562-28911627)
chr4 (51-149)||(29386081-29386178)
chr4 (281-338)||(5937729-5937786)
chr4 (81-146)||(26457092-26457157)
chr4 (238-338)||(16202934-16203033)
chr4 (100-160)||(29810238-29810298)
chr4 (100-160)||(18140452-18140512)
chr4 (100-160)||(24038129-24038189)
chr4 (100-160)||(24246618-24246678)
chr4 (100-160)||(31431103-31431163)
chr4 (100-160)||(39383025-39383085)
chr4 (100-160)||(49127665-49127725)
[»] chr7 (23 HSPs)
chr7 (51-166)||(25472797-25472912)
chr7 (51-159)||(30139868-30139976)
chr7 (230-338)||(26826526-26826634)
chr7 (51-165)||(12909180-12909294)
chr7 (230-336)||(25472602-25472709)
chr7 (230-338)||(30139664-30139773)
chr7 (73-165)||(37371052-37371144)
chr7 (230-338)||(26827603-26827707)
chr7 (230-338)||(15000022-15000130)
chr7 (73-160)||(25970406-25970493)
chr7 (231-334)||(43664656-43664758)
chr7 (230-338)||(25970587-25970695)
chr7 (230-338)||(30825344-30825451)
chr7 (73-152)||(26826355-26826434)
chr7 (82-160)||(14999850-14999928)
chr7 (82-152)||(30825172-30825242)
chr7 (81-146)||(39857058-39857123)
chr7 (259-338)||(47158059-47158137)
chr7 (100-160)||(41064609-41064669)
chr7 (236-334)||(2000011-2000107)
chr7 (81-160)||(43664852-43664931)
chr7 (100-160)||(25341512-25341572)
chr7 (100-160)||(31012470-31012530)
[»] chr6 (9 HSPs)
chr6 (50-165)||(365541-365656)
chr6 (51-165)||(21517390-21517504)
chr6 (56-165)||(10683125-10683232)
chr6 (256-338)||(10683335-10683417)
chr6 (100-146)||(31746241-31746287)
chr6 (81-146)||(4146793-4146858)
chr6 (230-338)||(27825153-27825261)
chr6 (230-324)||(20838345-20838439)
chr6 (100-160)||(30018851-30018911)
[»] chr8 (22 HSPs)
chr8 (51-160)||(35802382-35802491)
chr8 (230-338)||(35802180-35802288)
chr8 (51-165)||(8416613-8416727)
chr8 (51-165)||(22936603-22936717)
chr8 (51-165)||(45276436-45276550)
chr8 (230-338)||(36821462-36821571)
chr8 (230-338)||(2025667-2025775)
chr8 (231-338)||(35164217-35164324)
chr8 (81-152)||(36821673-36821744)
chr8 (230-338)||(22936406-22936514)
chr8 (73-159)||(33165764-33165850)
chr8 (230-338)||(8416816-8416925)
chr8 (230-336)||(45276241-45276347)
chr8 (230-338)||(13015833-13015940)
chr8 (51-138)||(44238802-44238889)
chr8 (82-160)||(35164419-35164492)
chr8 (85-146)||(924086-924147)
chr8 (256-338)||(3590251-3590331)
chr8 (100-160)||(629492-629552)
chr8 (230-278)||(7637384-7637432)
chr8 (100-160)||(30210472-30210532)
chr8 (100-160)||(30984369-30984429)
[»] chr5 (31 HSPs)
chr5 (230-338)||(41039972-41040080)
chr5 (50-165)||(41040169-41040284)
chr5 (51-165)||(27739384-27739498)
chr5 (51-165)||(31905381-31905495)
chr5 (51-165)||(37066592-37066706)
chr5 (54-159)||(41742261-41742366)
chr5 (230-338)||(11018265-11018373)
chr5 (230-338)||(41742057-41742166)
chr5 (50-165)||(33229154-33229269)
chr5 (51-165)||(21022665-21022779)
chr5 (51-165)||(39236929-39237043)
chr5 (230-328)||(31905584-31905683)
chr5 (51-165)||(7073308-7073422)
chr5 (54-165)||(21022036-21022147)
chr5 (230-338)||(10900286-10900393)
chr5 (51-165)||(19356451-19356566)
chr5 (230-337)||(8958340-8958447)
chr5 (51-160)||(53705-53813)
chr5 (60-160)||(8958541-8958640)
chr5 (82-144)||(32872636-32872698)
chr5 (230-315)||(53526-53611)
chr5 (230-327)||(40979573-40979669)
chr5 (82-160)||(11018467-11018545)
chr5 (81-146)||(2526265-2526330)
chr5 (100-160)||(3260906-3260966)
chr5 (100-160)||(14082891-14082951)
chr5 (100-160)||(42663434-42663494)
chr5 (230-338)||(25256645-25256758)
chr5 (230-338)||(25320436-25320549)
chr5 (238-335)||(33387539-33387635)
chr5 (100-160)||(29542509-29542569)
[»] chr2 (24 HSPs)
chr2 (51-165)||(37640794-37640908)
chr2 (50-165)||(7473468-7473583)
chr2 (56-165)||(35458218-35458327)
chr2 (230-338)||(7473672-7473780)
chr2 (231-334)||(37640601-37640704)
chr2 (51-165)||(13892703-13892817)
chr2 (51-165)||(14032828-14032942)
chr2 (51-165)||(17480765-17480879)
chr2 (230-338)||(43342112-43342221)
chr2 (50-165)||(14033322-14033437)
chr2 (230-338)||(44002801-44002909)
chr2 (51-160)||(43342315-43342423)
chr2 (230-322)||(35458036-35458129)
chr2 (243-338)||(37996884-37996979)
chr2 (246-333)||(32497051-32497138)
chr2 (82-160)||(3739086-3739163)
chr2 (82-160)||(37996700-37996778)
chr2 (100-160)||(2443733-2443793)
chr2 (297-338)||(17481009-17481050)
chr2 (100-160)||(14379738-14379798)
chr2 (100-160)||(31686855-31686915)
chr2 (100-160)||(31786777-31786837)
chr2 (100-160)||(40254422-40254482)
chr2 (100-160)||(44282572-44282632)
[»] scaffold0068 (2 HSPs)
scaffold0068 (51-160)||(37648-37757)
scaffold0068 (230-338)||(37849-37958)
[»] chr1 (38 HSPs)
chr1 (51-160)||(35604765-35604874)
chr1 (51-165)||(46406372-46406486)
chr1 (53-165)||(6706085-6706197)
chr1 (230-338)||(47655723-47655832)
chr1 (51-159)||(13509979-13510087)
chr1 (243-338)||(4485020-4485115)
chr1 (230-338)||(44740299-44740407)
chr1 (54-159)||(50030791-50030896)
chr1 (230-338)||(46033513-46033621)
chr1 (51-165)||(47655921-47656035)
chr1 (230-338)||(41512298-41512406)
chr1 (256-338)||(6706310-6706392)
chr1 (230-338)||(42137537-42137645)
chr1 (236-338)||(13509776-13509879)
chr1 (81-146)||(11829058-11829123)
chr1 (244-338)||(11050936-11051030)
chr1 (230-338)||(50030982-50031092)
chr1 (233-338)||(49430789-49430894)
chr1 (230-306)||(27416718-27416794)
chr1 (81-148)||(11051212-11051279)
chr1 (230-320)||(24075676-24075766)
chr1 (100-146)||(27575973-27576019)
chr1 (73-137)||(44740119-44740182)
chr1 (80-156)||(46033723-46033799)
chr1 (106-165)||(7385231-7385290)
chr1 (230-338)||(1762372-1762478)
chr1 (230-338)||(27067289-27067396)
chr1 (100-160)||(51488563-51488623)
chr1 (82-152)||(4485229-4485299)
chr1 (230-287)||(7385369-7385427)
chr1 (100-160)||(5271571-5271631)
chr1 (100-160)||(7593271-7593331)
chr1 (100-160)||(15353306-15353366)
chr1 (100-160)||(26821460-26821520)
chr1 (100-160)||(36496119-36496179)
chr1 (100-160)||(38627616-38627676)
chr1 (100-160)||(38843229-38843289)
chr1 (100-160)||(50979303-50979363)
[»] scaffold0097 (2 HSPs)
scaffold0097 (230-338)||(32898-33006)
scaffold0097 (58-152)||(33107-33202)
[»] chr3 (35 HSPs)
chr3 (230-338)||(45150752-45150860)
chr3 (54-165)||(48254537-48254648)
chr3 (51-165)||(45150549-45150663)
chr3 (233-338)||(28182527-28182632)
chr3 (230-338)||(30810862-30810970)
chr3 (51-165)||(39251427-39251541)
chr3 (230-334)||(11263845-11263949)
chr3 (230-338)||(39251630-39251739)
chr3 (230-338)||(42274671-42274779)
chr3 (51-165)||(31813352-31813466)
chr3 (231-338)||(48181224-48181332)
chr3 (230-338)||(42074546-42074650)
chr3 (82-159)||(28182352-28182429)
chr3 (233-338)||(50392657-50392761)
chr3 (230-334)||(51229881-51229985)
chr3 (19-122)||(11257752-11257847)
chr3 (82-160)||(33025836-33025914)
chr3 (82-160)||(42074374-42074452)
chr3 (230-330)||(48254347-48254448)
chr3 (230-334)||(53687217-53687321)
chr3 (81-160)||(51407445-51407524)
chr3 (230-313)||(51407618-51407701)
chr3 (82-152)||(42274500-42274570)
chr3 (82-152)||(48181051-48181121)
chr3 (82-146)||(53687429-53687493)
chr3 (120-165)||(11263711-11263756)
chr3 (82-160)||(51229709-51229787)
chr3 (230-287)||(33025685-33025742)
chr3 (259-338)||(45488944-45489023)
chr3 (230-338)||(44328806-44328914)
chr3 (100-160)||(52692005-52692065)
chr3 (230-338)||(44610664-44610769)
chr3 (100-160)||(47141469-47141529)
chr3 (100-160)||(47697077-47697137)
chr3 (100-160)||(51129082-51129142)
[»] scaffold0808 (2 HSPs)
scaffold0808 (256-338)||(4268-4350)
scaffold0808 (57-159)||(4047-4149)
[»] scaffold0069 (2 HSPs)
scaffold0069 (230-338)||(16965-17073)
scaffold0069 (82-146)||(16797-16861)
[»] scaffold0006 (2 HSPs)
scaffold0006 (230-338)||(91690-91798)
scaffold0006 (82-145)||(91516-91579)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 48406895 - 48407049
Alignment:
Q  19 tgtttgttttggcttttcagcatcaagaaggtaagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaa 118  Q
    ||||||||||||||||| |||| ||| |||| ||||| ||||||||| | | | |||| |||||||||||||||| ||||||||||| ||||||||||||    
T  48406895 tgtttgttttggctttttagcaccaacaaggcaagaaatgattctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttgatttgacttttaa 48406994  T
Q  119 gaattgcttctatcctccaaaagcaattatccttgaagctaccaatcaattctac 173  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48406995 gaattgcttctatcctccaaatgcaattatccttgaagctaccaatcaattctac 48407049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 48407106 - 48407214
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  48407106 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcataaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 48407205  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  48407206 agttaccaa 48407214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 22606304 - 22606201
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  22606304 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcgaaccaaattagcccccgaaaaatgtttatggtcatg 22606205  T
Q  330 agtt 333  Q
    ||||    
T  22606204 agtt 22606201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 38767764 - 38767851
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38767764 aaaagtgaaaaattaagttttcaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 38767851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 52058377 - 52058285
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctaccaatc 165  Q
    |||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52058377 aaaagtaaaaaactgaattttcaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatc 52058285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 22606507 - 22606393
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | ||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  22606507 aagaagtgattctacaaccctcaaaagagaaaaattgaattttcaatggtgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattc 22606408  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  22606407 gtgaagctacaaatc 22606393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 30418338 - 30418237
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  30418338 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaatcaaattagcccccgaaaaatgtttatggtcat 30418239  T
Q  329 ga 330  Q
    ||    
T  30418238 ga 30418237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 38767945 - 38768053
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||  |||||| ||||||| ||||||||| || ||||||| ||||||||| ||    
T  38767945 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcggaaaacttagcgaaccaaattagcacctgaaaaatgtttatggtcgtg 38768044  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  38768045 agttaccaa 38768053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 28964012 - 28963901
Alignment:
Q  54 aagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttg 153  Q
    |||||||||||| |  || |||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||     
T  28964012 aagtgattctacaacattcaaaagtgaaaaactgagtttttaatggtgtttggtttgacttttaagaattgattatatcctccaaaagcaattattctta 28963913  T
Q  154 aagctaccaatc 165  Q
    ||||||| ||||    
T  28963912 aagctacaaatc 28963901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 30418545 - 30418430
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttgg-tttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    ||||||||||||||  ||||| |||||| |||||||||||||| |||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||    
T  30418545 aagaagtgattctataatcttcaaaagtaaaaaattgagtttttaatggtgtttgggtttggcttttaaaaattgattctatcctccaaaagcaattatc 30418446  T
Q  150 cttgaagctaccaatc 165  Q
    ||| ||||||| ||||    
T  30418445 cttcaagctacaaatc 30418430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 53663579 - 53663471
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||| || |||| | |||||||||| ||||||| ||||||||||||    
T  53663579 caatcctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaacttaacgaacctaattagcccctgaaaaatgtttatggtcatg 53663480  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  53663479 agttaccaa 53663471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 39732964 - 39733072
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| || |||||||||||||| ||||||||| ||||||| || | || ||||||| |||||  ||||||||||||||||||    
T  39732964 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattaacccccataaaatatttatggtcatg 39733063  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  39733064 agttaccaa 39733072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 50523815 - 50523707
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||||| |||| ||||||||| || |||||||||||||| ||||||||| ||||||  || |||| |||||||||||||  ||||||||||||||||||    
T  50523815 caattcttcttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccataaaatatttatggtcatg 50523716  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  50523715 agttaccaa 50523707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 53404238 - 53404149
Alignment:
Q  71 ttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||| |||||||||||||| |||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||    
T  53404238 ttaaaagtaaaaaattgagttttcaatgttgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctac 53404149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 45105960 - 45106068
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| |||| |||| ||||||||||||||||| ||||||||| ||||||| || | || ||| |||||||||||||| | ||||||||||||    
T  45105960 caattctctttctttttactttgtaattaatttgatgaaccaaatttaataagaaaacttaaccaaccaatttagcccccgaaaattgtttatggtcatg 45106059  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  45106060 agttaccaa 45106068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 49723936 - 49724042
Alignment:
Q  232 attctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgag 331  Q
    |||||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||||  || |||| |||||||| ||  ||||||| ||||||||||||||    
T  49723936 attctccttctttttgctttgtaattaatttgataaaccaaatttaatcagaaaaattaacgaaccaaattagtccttgaaaaatgtttatggtcatgag 49724035  T
Q  332 ttaccaa 338  Q
    |||||||    
T  49724036 ttaccaa 49724042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 28963813 - 28963712
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||| ||||||||||  ||||||| |||||||||||    
T  28963813 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaattaaattagcccttgaaaaatgtttatggtcat 28963714  T
Q  329 ga 330  Q
    ||    
T  28963713 ga 28963712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 49723757 - 49723825
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaag 141  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  49723757 aaaagtgaaaaattgagtttccaatggtgtttggtttggcttttaagaattgtttctatcctccaaaag 49723825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 53404055 - 53403952
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||  ||||||||| ||||||||||||||||| ||||      ||||||| || |||| |||||||||| ||||||||| ||||||||||||    
T  53404055 caattctccttttttttgctttgtaattaatttgatgaaccaaatc-----agaaaacataacgaaccaaattagccaccgaaaaatgtttatggtcatg 53403961  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  53403960 agttaccaa 53403952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 8510312 - 8510411
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||||||||||||| ||  |||||| |||||| ||||||||| ||||||| || |||| |||||||||||  | |||||| |||||||||||    
T  8510312 caattctccttccttttgctttgtatctaatttaatgaaccaaatttaatcagaaaacttaacgaaccaaattagccctag-aaaataattatggtcatg 8510410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 51834346 - 51834286
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||    
T  51834346 tgtttggtttgacttttcagaattgcttctatcctccaaaagcaattctccataaagctac 51834286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 29385956 - 29385882
Alignment:
Q  262 tgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttacc 336  Q
    |||||||  ||||||||||||||||  || |||| ||||||||||||||||||||||||| |||||||| |||||    
T  29385956 tgatgaatcaaatttaattagaaaatttaacgaaccaaattagcccccgaaaaatatttaaggtcatgacttacc 29385882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 53663751 - 53663673
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| || |  ||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  53663751 aaattgagtttttaacgccgtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctac 53663673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 26457265 - 26457350
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaa 315  Q
    |||||||| ||| ||||||||| ||||| |||||||| ||  |||||||||||||||| |  |||||||||||||||| |||||||    
T  26457265 caattctcattctttttgctttttaattgatttgatgtaccgaatttaattagaaaacttgacgaatcaaattagccctcgaaaaa 26457350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 45105789 - 45105866
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagcta 159  Q
    |||||||||||| |||| ||||||||||| ||||| |||||||||| ||||||||| |||||||| | ||| ||||||    
T  45105789 aaattgagttttcaatgttgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagcta 45105866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 28911562 - 28911627
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||| |||||||||||  ||||||||||| ||| | ||||||||||||| |||||||||||||||    
T  28911562 aaaatcgagttttgaatcatgtttggtttggcttatcagaattgcttctaccctccaaaagcaatt 28911627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 29386178 - 29386081
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    ||||||||||||||| | ||| ||||||| |||| ||||||||  ||||||||| ||||| ||||||| ||||| || |||| || |||| ||||||||    
T  29386178 aagaagtgattctacaaccttcaaaagtg-aaaactgagttttttatggtgtttagtttggcttttaacaattgattttatcttcgaaaatcaattatc 29386081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 5937786 - 5937729
Alignment:
Q  281 agaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||| || |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  5937786 agaaaacttaacgaaccaaattagcccccataaaatatttatgatcatgagttaccaa 5937729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 26457092 - 26457157
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||||||| || | |||| | |||||||||| |||||||||| |||||||||||| |||||    
T  26457092 aaaattgagtttttaaagttgttagatttgacttttcagaattgcttttatcctccaaaaacaatt 26457157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 16203033 - 16202934
Alignment:
Q  238 cttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttacca 337  Q
    |||| ||||| ||| || |||||||||||||| ||||||||| | ||||  ||  |||  ||||||| || || ||||||||||||||||||||||||||    
T  16203033 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattag-cctcggaaaatatttatggtcatgagttacca 16202935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 29810298 - 29810238
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| | ||||||||| |||||| ||||| | || |||||||||||||    
T  29810298 tgtttggtttgacttttcataattgcttccatcctctaaaaggagttctccttgaagctac 29810238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 18140452 - 18140512
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  18140452 tgtttggtttggctttttaaaatagcttttatcctccaaaagcaattttagttgaagctac 18140512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 24038189 - 24038129
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  24038189 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 24038129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 24246618 - 24246678
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  24246618 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 24246678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 31431163 - 31431103
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  31431163 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 31431103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 39383085 - 39383025
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  39383085 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 39383025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 49127665 - 49127725
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  49127665 tgtttggtttggctttttaaaatagcttttatcctccaaaagcaattttagttgaagctac 49127725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 25472912 - 25472797
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25472912 aagaagtgattctacaaccttcaaaaatgacaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaagcaattatcc 25472813  T
Q  151 ttgaagctaccaatca 166  Q
    |||||||||| |||||    
T  25472812 ttgaagctacaaatca 25472797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 30139976 - 30139868
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  30139976 aagaagtgattctacaatctttaaaagtgaaaatttgagtttttaatggtgtttggtttgacttttaagaattgattctattctccaaaaacaattatcc 30139877  T
Q  151 ttgaagcta 159  Q
    || ||||||    
T  30139876 ttaaagcta 30139868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 26826526 - 26826634
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| |||||||| |||||||| ||||||||| ||||||| || |||| |||||||||||||||||||| ||||||||||||    
T  26826526 caattctccttctttttgctttgtaattaatgtgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatg 26826625  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  26826626 agttaccaa 26826634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 12909180 - 12909294
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||||||||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12909180 aagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaagaattgattctatcctccaaaagcaattatcc 12909279  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  12909280 atgaagctacaaatc 12909294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 25472709 - 25472602
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| ||    
T  25472709 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtaat 25472610  T
Q  329 gagttacc 336  Q
    || |||||    
T  25472609 gacttacc 25472602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 30139773 - 30139664
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||| || |||| |||||||||||||||||||| |||| ||||||    
T  30139773 caattctccttctttttgctttgtaatttaatttgataaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttacggtcat 30139674  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  30139673 gacttaccaa 30139664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 37371052 - 37371144
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctaccaatc 165  Q
    |||||||||||||| |||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||| ||||    
T  37371052 aaaagtgaaaaattaagtttttaatgatgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatc 37371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 26827707 - 26827603
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||    |||| || |||| ||||||||||| |||||||| ||||||||||||    
T  26827707 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaat----aaacttaacgaaccaaattagccctcgaaaaatgtttatggtcatg 26827612  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  26827611 agttaccaa 26827603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 15000022 - 15000130
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||| ||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||| ||  ||| | |||||||||| ||||||| ||||||||||||    
T  15000022 caatcctccttcttttttctttgtaattaatttgatgaaccaaatttaatcagaaaacttaaagaacctaattagcccctgaaaaatgtttatggtcatg 15000121  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  15000122 agttaccaa 15000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 25970406 - 25970493
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||| |||| || || |||||||    
T  25970406 aaaagtgaaaaattgaatattcaatggtgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctac 25970493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 231 - 334
Target Start/End: Complemental strand, 43664758 - 43664656
Alignment:
Q  231 aattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatga 330  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||  || |||| ||||||||||||| |||||| |||||||||| ||    
T  43664758 aattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagccccc-aaaaatgtttatggtcacga 43664660  T
Q  331 gtta 334  Q
    ||||    
T  43664659 gtta 43664656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 25970587 - 25970695
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| | ||||||||||||||| ||||||||| ||||||| ||    ||||||||||||  | |||||||||||||||||||    
T  25970587 caattctccttctttttgctttgttattaatttgatgaaccaaatttaatgagaaaacttaatagatcaaattagccatcaaaaaatatttatggtcatg 25970686  T
Q  330 agttaccaa 338  Q
    | |||||||    
T  25970687 aattaccaa 25970695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 30825344 - 30825451
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||| ||| ||||||||||||| ||| ||||||||| ||||||| || | || ||||||| ||||||| |||| ||||||||||||    
T  30825344 caattctccttctttttgttttgtaattaatttgat-aaccaaatttaatcagaaaacttaaccaaccaaattatcccccgataaatgtttatggtcatg 30825442  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  30825443 agttaccaa 30825451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 26826355 - 26826434
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    ||||||| ||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||| |||| |||||    
T  26826355 aaaagtggaaaattgagttttcaatggtatttggtttggcttttaagaattacttctatcctccaaaagtaattctcctt 26826434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 14999850 - 14999928
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||| |||||||||||||||| |||| ||||| |||||||    
T  14999850 aaattgagttttcaatgttgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctac 14999928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 30825172 - 30825242
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||    
T  30825172 aaattgagttttcaatgttgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctcctt 30825242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 39857058 - 39857123
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  39857058 aaaattgagttttcaatcatgtttggtttgacttttcagaattgcttctatcctccaaaagtaatt 39857123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 47158137 - 47158059
Alignment:
Q  259 atttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||||||| | ||||||||||||||| || |||| ||||||||| || | |||||||||||| ||||||||||||||    
T  47158137 atttgatgaaccatatttaattagaaaacttaacgaaccaaattagctccag-aaaatatttatgatcatgagttaccaa 47158059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 41064609 - 41064669
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||||||||||||||||||||| ||||| ||| | |||||||    
T  41064609 tgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctac 41064669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 2000107 - 2000011
Alignment:
Q  236 tccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagtta 334  Q
    |||||| ||||| ||| || ||||||||| |||  ||||||||| | ||||  || |||| |||||||||||   ||||||||||||||||||||||||    
T  2000107 tccttctttttggtttgtatttaatttgacgaagcaaatttaatcaaaaaatttaacgaaccaaattagccca--aaaaatatttatggtcatgagtta 2000011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 43664931 - 43664852
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||| |||| |||| |||||| |||  ||||| ||||||  ||||||||||||||||||||| | ||| |||||||    
T  43664931 aaaattgaattttcaatgttgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctac 43664852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 25341572 - 25341512
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  25341572 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 25341512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 31012530 - 31012470
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  31012530 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 31012470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 365541 - 365656
Alignment:
Q  50 taagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  365541 taagaaatgattctacaatcttcaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcatccaaaagcaattatc 365640  T
Q  150 cttgaagctaccaatc 165  Q
    ||| ||||||| ||||    
T  365641 cttaaagctacaaatc 365656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 21517504 - 21517390
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21517504 aagaagtgattctacaaccctcaaaagtgaaaagttgaattttcaatggtgtttggtttgacttttaagaattgattctatcctccaaaagcaattatcc 21517405  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  21517404 atgaagctacaaatc 21517390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 10683125 - 10683232
Alignment:
Q  56 gtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaa 155  Q
    |||||||||| | ||| ||||||||||   ||| |||| |||||||||||||||| ||||||||||||| |||||||||| ||||  |||||||||| ||    
T  10683125 gtgattctacaaccttcaaaagtgaaac--tgaatttttaatggtgtttggtttggcttttaagaattgattctatcctctaaaattaattatccttaaa 10683222  T
Q  156 gctaccaatc 165  Q
    ||||| ||||    
T  10683223 gctacaaatc 10683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 10683335 - 10683417
Alignment:
Q  256 ttaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    |||||||||||||| ||||||||||||||||  || | || ||||||| ||||||| |||| |||||||| |||| |||||||    
T  10683335 ttaatttgatgaaccaaatttaattagaaaatttaacaaaccaaattaacccccgataaatgtttatggtaatgacttaccaa 10683417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 31746287 - 31746241
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  31746287 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaatt 31746241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 4146793 - 4146858
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    |||||||||||||  ||  ||||||||||| ||||| ||||||||||||| || ||||||||||||    
T  4146793 aaaattgagttttctatcatgtttggtttggcttttcagaattgcttctaccccccaaaagcaatt 4146858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 27825153 - 27825261
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaat-tagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||  ||| || |||||||||||||| |||||||||  | ||||  || |||| |||||||| || | |||||||||||||||||     
T  27825153 caattctccttctttttcgtttgtatttaatttgatgaaccaaatttaatccaaaaaatttaacgaaccaaattag-ccacaaaaaatatttatggtcag 27825251  T
Q  329 gagttaccaa 338  Q
    ||||||||||    
T  27825252 gagttaccaa 27825261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 20838439 - 20838345
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatgg 324  Q
    |||||| | ||| ||||||||| || |||||||||||||| ||||||||| | ||||| || ||||  |||||| || ||  |||||||||||||    
T  20838439 caattcacattctttttgctttgtatttaatttgatgaaccaaatttaatcaaaaaacttaacgaactaaattaacctccataaaatatttatgg 20838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 30018851 - 30018911
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  30018851 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 30018911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 35802491 - 35802382
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||  | | | ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35802491 aagaagtgattctagaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatcc 35802392  T
Q  151 ttgaagctac 160  Q
    ||||||||||    
T  35802391 ttgaagctac 35802382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 35802288 - 35802180
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| || | || |||||||||||||||||||| ||||||||||||    
T  35802288 caattctccttctttttgctttataattaatttgatgaacacaatttaatcagaaaacttaacaaaccaaattagcccccgaaaaatgtttatggtcatg 35802189  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  35802188 agttaccaa 35802180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 8416613 - 8416727
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| |  || |||||||||||||||| |||| ||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  8416613 aagaagtgattctacaactttcaaaagtgaaaaattgaatttttaatcgtgtttgatttggcttttaagaattgattctatcctccaaaagcaattatcc 8416712  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  8416713 ttaaagctacaaatc 8416727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 22936717 - 22936603
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| |||||||||||| |||||||| |||||||||| |||| |||||||||||||| |||||||||||||||  |||||| |    
T  22936717 aagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttcacttttaagaattgattctatcctccaaaataaattattc 22936618  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  22936617 ttaaagctacaaatc 22936603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 45276550 - 45276436
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    |||||||||||| || | ||| |||||||||||| ||| |||| |||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||    
T  45276550 aagaagtgattcaacaaccttcaaaagtgaaaaactgaatttttaatggtgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatcc 45276451  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  45276450 ttaaagctacaaatc 45276436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 36821571 - 36821462
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaa-cgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||| ||| ||||||||| ||||||||||||||||| ||||||||| | |||| | ||||||| ||||||||||||||||||||||| ||||| ||    
T  36821571 caattctcattctttttgctttctaattaatttgatgaaccaaatttaatcaaaaaaacttagcgaaccaaattagcccccgaaaaatattaatggttat 36821472  T
Q  329 gagttaccaa 338  Q
    ||||||||||    
T  36821471 gagttaccaa 36821462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 2025667 - 2025775
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| || |||||||||||||| ||||||||| | ||||| || ||||  ||||||||||||  ||||||||| ||||||||    
T  2025667 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcataaaacttaacgaactaaattagcccccataaaatatttgtggtcatg 2025766  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  2025767 agttaccaa 2025775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 35164324 - 35164217
Alignment:
Q  231 aattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatga 330  Q
    ||||||||||| ||||| ||| |||||| |||||||||| ||||||||| ||||||| || | || |||||||||| |||| |||| |||||||||||||    
T  35164324 aattctccttctttttgttttgtaattagtttgatgaaccaaatttaatcagaaaacttaaccaaccaaattagcctccgataaatgtttatggtcatga 35164225  T
Q  331 gttaccaa 338  Q
    ||||||||    
T  35164224 gttaccaa 35164217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 36821744 - 36821673
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  36821744 aaaattgagttttcaatgttgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatcctt 36821673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 22936514 - 22936406
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||| ||| ||||| |||||||||||| ||||||||||||||||  || |||| ||||||||||||| |||||||||||||||| |    
T  22936514 caattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaagttaacgaaccaaattagccccc-aaaaatatttatggtcgt 22936416  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  22936415 gacttaccaa 22936406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 33165764 - 33165850
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagcta 159  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||||||||| |||||||||| ||||| |||| ||||| ||||||    
T  33165764 aaaagtgaaaaattgagtttttaacagtgtttggtttggcttttaagaattgtttctatcctctaaaagtaattctccttaaagcta 33165850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 8416816 - 8416925
Alignment:
Q  230 caattctccttccttttgctttataattaatt-tgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||| ||||||| ||||||||| ||||||| | |||||||| ||| ||||||||||||| |  |||| ||||||||| |||||||||| |||||||||||    
T  8416816 caatactccttctttttgctttgtaattaaatatgatgaaccaaaattaattagaaaacttcacgaaccaaattagcacccgaaaaatgtttatggtcat 8416915  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  8416916 gacttaccaa 8416925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 45276347 - 45276241
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| ||||||||| ||| |||||| |||| ||||||    
T  45276347 caattctcctactttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatgttta-ggtcat 45276249  T
Q  329 gagttacc 336  Q
    || |||||    
T  45276248 gacttacc 45276241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 13015833 - 13015940
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||| ||| || |||||||||||||  ||||||||| | ||||  || ||||||||||||| | |  ||||||||||||||||| |    
T  13015833 caattctctttctttttggtttgtatttaatttgatgaatcaaatttaatcaaaaaatttaacgaatcaaattag-cacaaaaaaatatttatggtcaag 13015931  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  13015932 agttaccaa 13015940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 44238802 - 44238889
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaa 138  Q
    ||||||||||||||| | | | |||||||||||  ||| |||| |||||||||| ||||  ||||||||||||| || ||||||||||    
T  44238802 aagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttagtttagcttttaagaattgattatatcctccaa 44238889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 35164492 - 35164419
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||| |||| |||| ||||||||||| ||||| ||     |||||||||||||||||||||| |||||||||||||    
T  35164492 aaattgaattttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattctccttgaagctac 35164419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 924086 - 924147
Alignment:
Q  85 ttgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||| |||  ||||||||||||||||| | |||||||||||| ||||||||| ||||    
T  924086 ttgagttttcaatcatgtttggtttgacttttcaaaattgcttctatactccaaaagtaatt 924147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 3590251 - 3590331
Alignment:
Q  256 ttaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    |||||||||||||| ||||||||| | ||||  || ||||  ||||||||| | ||||| |||||||||||||||||||||||    
T  3590251 ttaatttgatgaaccaaatttaataaaaaaat-taacgaactaaattagcctcagaaaa-tatttatggtcatgagttaccaa 3590331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 629552 - 629492
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  629552 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 629492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 7637384 - 7637432
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaa 278  Q
    |||||||||||| ||||||||| || |||||||||||||  ||||||||    
T  7637384 caattctccttcattttgctttgtatttaatttgatgaaataaatttaa 7637432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 30210472 - 30210532
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  30210472 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 30210532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 30984429 - 30984369
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  30984429 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 30984369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 41040080 - 41039972
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  41040080 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcaaatcaaattagcccccgaaaaatgtttatggtcatg 41039981  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  41039980 agttaccaa 41039972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 41040284 - 41040169
Alignment:
Q  50 taagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    |||||||||||||||| | | | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  41040284 taagaagtgattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggcttttaagaattgcttctatcctccaaaaataattatc 41040185  T
Q  150 cttgaagctaccaatc 165  Q
    ||||||||||| ||||    
T  41040184 cttgaagctacaaatc 41040169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 27739498 - 27739384
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | |||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27739498 aagaagtgattctacaacccttaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 27739399  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  27739398 gtgaagctacaaatc 27739384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 31905381 - 31905495
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||  | ||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  31905381 aagaagtgattctagaaccttcaaaagtgaaaaattgagtttttactggtgtttgttttgacttttaagaattgattctatcctccaaaagcaattatcc 31905480  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  31905481 ttaaagctacaaatc 31905495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 37066706 - 37066592
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| || ||||||| |||||||||||||     
T  37066706 aagaagtgattctacaacctttaaaagtgaaaaactgagtttttaatggtgtttggtttggcttttaagaattggttatatcctctaaaagcaattatca 37066607  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  37066606 ttaaagctacaaatc 37066592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 41742366 - 41742261
Alignment:
Q  54 aagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttg 153  Q
    |||||||||||  ||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||     
T  41742366 aagtgattctataatcttcaaaagtgaaaaactgagtttttaatggtgtttggtttaacttttaagaattgattctatcctccaaaagcaattgtcctta 41742267  T
Q  154 aagcta 159  Q
    ||||||    
T  41742266 aagcta 41742261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 11018373 - 11018265
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||||| | ||||||||||||||||||    
T  11018373 caattccccttccttttgctttctaattaatttgatgaaccaaatttaatcaaaaaacttagcgaaccaaattagcccctgtaaaatatttatggtcatg 11018274  T
Q  330 agttaccaa 338  Q
    || ||||||    
T  11018273 agctaccaa 11018265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 41742166 - 41742057
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||||    
T  41742166 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcat 41742067  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  41742066 gacttaccaa 41742057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 33229154 - 33229269
Alignment:
Q  50 taagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    ||||| |||||||||| | | | |||||||||||  ||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  33229154 taagacgtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaagcaattatc 33229253  T
Q  150 cttgaagctaccaatc 165  Q
    | ||||||||| ||||    
T  33229254 catgaagctacaaatc 33229269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 21022779 - 21022665
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||||||||||  ||| |||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  21022779 aagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctcctaaagcaattatcc 21022680  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  21022679 atgaagctacaaatc 21022665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 39237043 - 39236929
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||||||||||  ||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  39237043 aagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcc 39236944  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  39236943 atgaagctacaaatc 39236929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 31905584 - 31905683
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||||    
T  31905584 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcat 31905683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 7073422 - 7073308
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||||||||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||   ||||||| ||||||||    
T  7073422 aagaagtgattctacaaccctcaaaagtgaaaaactgaatttttaatggtgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatcc 7073323  T
Q  151 ttgaagctaccaatc 165  Q
    |||||||||| ||||    
T  7073322 ttgaagctacaaatc 7073308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 21022036 - 21022147
Alignment:
Q  54 aagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttg 153  Q
    |||||||||||| | | | |||||||||||  ||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||    
T  21022036 aagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatg 21022135  T
Q  154 aagctaccaatc 165  Q
    ||| ||| ||||    
T  21022136 aagttacaaatc 21022147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 10900286 - 10900393
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||||||| || |||||||||||||| ||||||||| ||||||| || |||| |||||||| ||||  |||| |||||||||||||    
T  10900286 caattctctttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag-ccccataaaagatttatggtcatg 10900384  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  10900385 agttaccaa 10900393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 19356451 - 19356566
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaat-tgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    ||||||||||||||| | ||| |||| |||||||  |||||| | |||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||    
T  19356451 aagaagtgattctacaaccttcaaaaatgaaaaaactgagttcttaatggtgtttggtttggcttttaagagttgattctatcctctaaaagcaattatc 19356550  T
Q  150 cttgaagctaccaatc 165  Q
    ||| || |||| ||||    
T  19356551 cttaaaactacaaatc 19356566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 8958447 - 8958340
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||||||| ||||||||||||||||| ||||||||| || |||| || | || ||||||| |||||  ||||| ||||||||||||    
T  8958447 caattctcattctttttgctttgtaattaatttgatgaaccaaatttaatcaggaaacttaaccaaccaaattaacccccataaaatgtttatggtcatg 8958348  T
Q  330 agttacca 337  Q
    | ||||||    
T  8958347 aattacca 8958340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 53813 - 53705
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||| ||| ||| | ||| ||||||||||| ||||| ||| || | ||||||||||| ||||| | |||||||||||||||||||||||||||||      
T  53813 aagaagtcattttacaaacttgaaaagtgaaaa-ttgagcttttaaagttgtttggtttgccttttcataattgcttctatcctccaaaagcaattatgg 53715  T
Q  151 ttgaagctac 160  Q
    ||||||||||    
T  53714 ttgaagctac 53705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 8958640 - 8958541
Alignment:
Q  60 ttctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagcta 159  Q
    |||||| | ||| ||||||||||| ||||||||| |||| | ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||| ||||||    
T  8958640 ttctacaaacttcaaaagtgaaaa-ttgagttttcaatgttatttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagcta 8958542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 32872698 - 32872636
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaa 144  Q
    |||||||||||| |||| |||||| |||||||||| | |||||||||||||||||||||||||    
T  32872698 aaattgagttttcaatgttgtttgatttgactttttaaaattgcttctatcctccaaaagcaa 32872636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 53611 - 53526
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaa 315  Q
    |||||||| ||  ||||||||| ||||| |||||||||||  |||||||||||||||| || |||| ||||||||||| |||||||    
T  53611 caattctcattttttttgctttttaattgatttgatgaaccgaatttaattagaaaacttaacgaaccaaattagccctcgaaaaa 53526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 40979573 - 40979669
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtca 327  Q
    |||||||||||| |||||| || || |||||||||||||| ||||||||| ||||||| || | || ||||||| |||||  ||||||||||||||||    
T  40979573 caattctccttctttttgccttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaatta-cccccataaaatatttatggtca 40979669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 11018545 - 11018467
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||| |||| |||| |||||||||||  |||| ||||||| |||||||||| |||| ||||||||||| |||||||    
T  11018545 aaattgaattttcaatgttgtttggtttggtttttcagaattgtttctatcctcaaaaaacaattatccttaaagctac 11018467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 2526265 - 2526330
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    |||||||||||||  ||  ||||||||||| ||||| ||||||||||||| || ||||||||||||    
T  2526265 aaaattgagttttctatcatgtttggtttggcttttcagaattgcttctaccccccaaaagcaatt 2526330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 3260966 - 3260906
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  3260966 tgtttggtttgacttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 3260906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 14082891 - 14082951
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  14082891 tgtttggtttgactttttaaaatagcttttatcctccaaaagcaattctagttgaagctac 14082951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 42663434 - 42663494
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  42663434 tgtttggtttgacttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 42663494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 25256758 - 25256645
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaa-----atatttatgg 324  Q
    |||||||||||  ||||| ||| || |||||||||||||| ||||||||| | ||||  || |||| |||||||||| | |||||     ||||||||||    
T  25256758 caattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttatatttatgg 25256659  T
Q  325 tcatgagttaccaa 338  Q
    |  |||||||||||    
T  25256658 ttgtgagttaccaa 25256645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 25320549 - 25320436
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaa-----atatttatgg 324  Q
    |||||||||||  ||||| ||| || |||||||||||||| ||||||||| | ||||  || |||| |||||||||| | |||||     ||||||||||    
T  25320549 caattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttatatttatgg 25320450  T
Q  325 tcatgagttaccaa 338  Q
    |  |||||||||||    
T  25320449 ttgtgagttaccaa 25320436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 33387635 - 33387539
Alignment:
Q  238 cttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttac 335  Q
    |||| ||||| ||| || |||||||||||||| ||||||||| | ||||  ||  |||  ||||||||| | | ||||||||||||||||||||||||    
T  33387635 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcctcag-aaaatatttatggtcatgagttac 33387539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 29542569 - 29542509
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  29542569 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 29542509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 37640908 - 37640794
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  37640908 aagaagtgattctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatcc 37640809  T
Q  151 ttgaagctaccaatc 165  Q
    |||||||||| ||||    
T  37640808 ttgaagctacaaatc 37640794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 7473468 - 7473583
Alignment:
Q  50 taagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    |||||||| ||||||| | | | ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  7473468 taagaagtcattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatc 7473567  T
Q  150 cttgaagctaccaatc 165  Q
    ||||||||||| ||||    
T  7473568 cttgaagctacaaatc 7473583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 35458327 - 35458218
Alignment:
Q  56 gtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaa 155  Q
    |||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||    
T  35458327 gtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaa 35458228  T
Q  156 gctaccaatc 165  Q
     |||| ||||    
T  35458227 actacaaatc 35458218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 7473672 - 7473780
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  7473672 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagtgaaccaaattagcccccgaaaaatgtttatggtcatg 7473771  T
Q  330 agttaccaa 338  Q
    | |||||||    
T  7473772 aattaccaa 7473780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 334
Target Start/End: Complemental strand, 37640704 - 37640601
Alignment:
Q  231 aattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatga 330  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| || |||| ||||||| |||| ||||||| |||||||||||||    
T  37640704 aattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaacgaaccaaattaacccctgaaaaatgtttatggtcatga 37640605  T
Q  331 gtta 334  Q
    ||||    
T  37640604 gtta 37640601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 13892703 - 13892817
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| ||| | |||||||||||  ||| |||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  13892703 aagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaagaattgattctatcctccaaaagcaattatcc 13892802  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  13892803 atgaagctacaaatc 13892817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 14032828 - 14032942
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| ||| | |||||||||||  ||| |||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  14032828 aagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaagaattgattctatcctccaaaagcaattatcc 14032927  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  14032928 atgaagctacaaatc 14032942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 17480765 - 17480879
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| |||||||||||| |||||||| |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||     
T  17480765 aagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttggcttttaagaattgattctatccttcaaaagcaattatct 17480864  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  17480865 ttaaagctacaaatc 17480879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 43342221 - 43342112
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || | || |||||||||||| |||||||||||||||||||    
T  43342221 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacaaaccaaattagcccctgaaaaatatttatggtcat 43342122  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  43342121 gacttaccaa 43342112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 14033322 - 14033437
Alignment:
Q  50 taagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatc 149  Q
    ||||| |||||||||| | | | |||||||||||  ||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  14033322 taagacgtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaagcaattatc 14033421  T
Q  150 cttgaagctaccaatc 165  Q
    | ||||||||| ||||    
T  14033422 catgaagctacaaatc 14033437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 44002801 - 44002909
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||| |||||| ||||||||| || |||||||||||||| ||||||||| ||||||| || | || |||||||||||||  ||||||||||||||||||    
T  44002801 caattatccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattagcccccataaaatatttatggtcatg 44002900  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  44002901 agttaccaa 44002909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 43342423 - 43342315
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| |||||||||| | |||||||| | ||||||||| ||||  |||||||||||| |||||||||||||||||||||||||    
T  43342423 aagaagtgattctacaaccttcaaaagtgaaacaatgagttttta-tggtgtttgatttggtttttaagaattgattctatcctccaaaagcaattatcc 43342325  T
Q  151 ttgaagctac 160  Q
    || |||||||    
T  43342324 ttaaagctac 43342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 35458129 - 35458036
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttat 322  Q
    |||||||||||| ||||||||| ||||| |||||||||||  | ||||||||||||||| || |||| |||||||||||||||||||| |||||    
T  35458129 caattctccttctttttgctttgtaatttaatttgatgaatcatatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttat 35458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 37996884 - 37996979
Alignment:
Q  243 ttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||||| ||||| ||||||||||| |||||||||  |||||| || ||||||||||||||  || |||||| |||||| | ||||||||||||    
T  37996884 ttttgctttgtaatttatttgatgaaccaaatttaatcggaaaacttaacgaatcaaattagcttccaaaaaatgtttatgataatgagttaccaa 37996979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 32497138 - 32497051
Alignment:
Q  246 tgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagtt 333  Q
    |||||| ||||||||||||||||  ||||||||| ||||||| || |||| |||||||   |||||||||| ||||||||||| ||||    
T  32497138 tgctttgtaattaatttgatgaatcaaatttaatcagaaaacttaacgaaccaaattattacccgaaaaatgtttatggtcatcagtt 32497051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 3739163 - 3739086
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| |||| |||| |||||| ||||| | ||||||||||||| ||||||||||||| ||||| |||||||    
T  3739163 aaattgagttttcaatgttgtt-ggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctac 3739086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 37996700 - 37996778
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| |||  ||||||||||| ||||| | |||||||||||||||||||||| ||||  |||| |||||||    
T  37996700 aaattgagttttcaatattgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctac 37996778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 2443793 - 2443733
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| | |||||||    
T  2443793 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccataaagctac 2443733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 17481009 - 17481050
Alignment:
Q  297 caaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  17481009 caaattagcccccgaaaaatatttatgatcatgacttaccaa 17481050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 14379738 - 14379798
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  14379738 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 14379798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 31686915 - 31686855
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  31686915 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 31686855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 31786777 - 31786837
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  31786777 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 31786837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 40254422 - 40254482
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  40254422 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 40254482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 44282572 - 44282632
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  44282572 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 44282632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 37648 - 37757
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  37648 aagaagtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcc 37747  T
Q  151 ttgaagctac 160  Q
    || |||||||    
T  37748 tttaagctac 37757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 37849 - 37958
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||| ||| ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||| ||||||||| |||||||| |     
T  37849 caattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtaac 37948  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  37949 gacttaccaa 37958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 35604765 - 35604874
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | | | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  35604765 aagaagtgattctacaaccctcaaaagtgaaaaactgagttttcaatggtgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatcc 35604864  T
Q  151 ttgaagctac 160  Q
    ||||||||||    
T  35604865 ttgaagctac 35604874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 46406372 - 46406486
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | ||| ||||||||||| |||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  46406372 aagaagtgattctacaaccttcaaaagtgaaaagttgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaagcaattatcc 46406471  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  46406472 atgaagctacaaatc 46406486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 6706085 - 6706197
Alignment:
Q  53 gaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    ||||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  6706085 gaagtaattctacaatctttaaaagtgaaaaattgaatttttaatggtgtttagtttggcttttaagaattgattctatcctccaaaaacaattatcctt 6706184  T
Q  153 gaagctaccaatc 165  Q
     ||||||| ||||    
T  6706185 aaagctacaaatc 6706197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 47655832 - 47655723
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  47655832 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtcat 47655733  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  47655732 gacttaccaa 47655723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 13510087 - 13509979
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||| ||||||||| | ||| |||||||||||| |||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  13510087 aagaaatgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttggtttagcttttaagaattgattctatcctccaaaagcaattatcc 13509988  T
Q  151 ttgaagcta 159  Q
    || ||||||    
T  13509987 ttaaagcta 13509979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 338
Target Start/End: Complemental strand, 4485115 - 4485020
Alignment:
Q  243 ttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||| |||||||    
T  4485115 ttttgctttgtaattaatttgatgaaccaaatttaattagaaaacttaacgaaactaattagcccccgaaaaatatttatggtcatgatttaccaa 4485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 44740299 - 44740407
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||||||||||  |||||||| ||||||| ||||||||| ||||||||| ||||||| || |||| |||||||||| ||||||||||||||| ||||||    
T  44740299 caattctccttctgtttgctttgtaattaacttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccgaaaaatatttattgtcatg 44740398  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  44740399 agttaccaa 44740407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 50030791 - 50030896
Alignment:
Q  54 aagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttg 153  Q
    |||||||| ||| |||||||||||||||||| ||| |||| ||||||||||||||||  |||||||||||| ||||||||||||||| |||||||| ||     
T  50030791 aagtgattatacaatctttaaaagtgaaaaactgaattttcaatggtgtttggtttgggttttaagaattgattctatcctccaaaaacaattatcttta 50030890  T
Q  154 aagcta 159  Q
    ||||||    
T  50030891 aagcta 50030896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 46033621 - 46033513
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||||||  | | || ||||||||||||| |||||||||||  ||||||    
T  46033621 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaactcaacaaaccaaattagcccccaaaaaatatttactgtcatg 46033522  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  46033521 agttaccaa 46033513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 47656035 - 47655921
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||| ||| | | | ||||||||  || |||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  47656035 aagaagtgattatacaaccctcaaaagtgactaactgagtttttaatgatgtttggtttggcttttaagaattgattctatcctccaaaagcaattatcc 47655936  T
Q  151 ttgaagctaccaatc 165  Q
    || ||||||| ||||    
T  47655935 ttaaagctacaaatc 47655921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 41512298 - 41512406
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||| ||| || ||| |||||||||| ||||||||| ||||||| || |||| |||||||||||||  ||||||||||||| ||||    
T  41512298 caattctccttctttttgttttgtatttagtttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggccatg 41512397  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  41512398 agttaccaa 41512406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 6706310 - 6706392
Alignment:
Q  256 ttaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    |||||||||||||| ||||||||||||||||| || |||| |||||||||| ||||||||| ||||||||||||| |||||||    
T  6706310 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtcatgacttaccaa 6706392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 42137645 - 42137537
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| || ||||| |||| ||| ||||||||| ||||||| || |||| ||| ||| |||||  ||||||||||||||||||    
T  42137645 caattctccttctttttgctttgtatttaatctgataaaccaaatttaatcagaaaacttaacgaaccaacttaacccccataaaatatttatggtcatg 42137546  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  42137545 agttaccaa 42137537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 13509879 - 13509776
Alignment:
Q  236 tccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagtta 334  Q
    |||||| ||||||||| ||||| || ||||||||| ||||||||||| |||||  | |||| |||||||||||||||||||| ||||||||||||| |||    
T  13509879 tccttctttttgctttgtaatttaacttgatgaaccaaatttaattacaaaactgaacgaaccaaattagcccccgaaaaatgtttatggtcatgactta 13509780  T
Q  335 ccaa 338  Q
    ||||    
T  13509779 ccaa 13509776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 11829058 - 11829123
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||||||| |||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  11829058 aaaattgagttttcaatcatgtttggtttgccttttaagaattgcttctatcctccaaaagcaatt 11829123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 11051030 - 11050936
Alignment:
Q  244 tttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    |||||||| ||||||||||||||||| ||||||| | | ||||  ||  | ||||||||||||| ||||||||||||||||| ||||||||||||    
T  11051030 tttgctttgtaattaatttgatgaaccaaatttattcaaaaaaattaatggatcaaattagccctcgaaaaatatttatggtaatgagttaccaa 11050936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 50030982 - 50031092
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagc-ccccgaaaaatatttatggtca 327  Q
    |||||||||||| ||||||||| ||||| |||||||||||  ||||||||||||||||| || |||| |||||||||  ||  |||||| ||||||||||    
T  50030982 caattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaacttaacgaaccaaattagcgtccaaaaaaatgtttatggtca 50031081  T
Q  328 tgagttaccaa 338  Q
    ||| |||||||    
T  50031082 tgacttaccaa 50031092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 49430789 - 49430894
Alignment:
Q  233 ttctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagt 332  Q
    |||| |||| ||||||||| |||||||||| |||||| ||||||||| | ||||| || |||| ||||  ||| | ||||||||||||||||||||||||    
T  49430789 ttcttcttctttttgctttgtaattaatttaatgaaccaaatttaatcaaaaaacttaacgaaccaaaccagctctcgaaaaatatttatggtcatgagt 49430888  T
Q  333 taccaa 338  Q
     |||||    
T  49430889 caccaa 49430894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 27416718 - 27416794
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcc 306  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||  || |||| ||||||||||    
T  27416718 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcc 27416794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 11051279 - 11051212
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattat 148  Q
    ||||||||||||| |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  11051279 aaaattgagttttcaatcatgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattat 11051212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 320
Target Start/End: Original strand, 24075676 - 24075766
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatattt 320  Q
    |||||||  ||| ||||||||| || |||||||||||||| ||||||||| ||||||| || |||| |||||||||| ||  |||||||||    
T  24075676 caattctatttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattt 24075766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 27575973 - 27576019
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  27575973 tgtttggtttgacttttcataattgcttctatcctccaaaagcaatt 27576019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 44740119 - 44740182
Alignment:
Q  73 aaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctcca 137  Q
    |||||||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||| ||||    
T  44740119 aaaagtgaaagattgagtttc-aatggtgtttggtttgccttttaagaattgtttctatcttcca 44740182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 46033799 - 46033723
Alignment:
Q  80 aaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaag 156  Q
    |||||||||||||| |||  |||||| |||||||||| | ||||||||||||||| ||||| ||||| || ||||||    
T  46033799 aaaaattgagttttcaatcatgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaag 46033723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 7385231 - 7385290
Alignment:
Q  106 gtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctaccaatc 165  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| || ||||||| ||||    
T  7385231 gtttgacttttaagaattaattctatccttcaaaagcaattatctttaaagctacaaatc 7385290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 1762372 - 1762478
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||| ||| || |||||||||||||| |||||  || | ||||  || |||| |||||||| || || |||||||||| |||||||    
T  1762372 caattctccttctttttggtttgtatttaatttgatgaaccaaattgtatcaaaaaatttaacgaaccaaattag-cctcggaaaatattta-ggtcatg 1762469  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  1762470 agttaccaa 1762478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 27067289 - 27067396
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||||||||||  |||| ||| || |||||||||||||| ||||||||| | ||||  || ||||||||||||   ||  ||| ||||||||||||| |    
T  27067289 caattctccttctctttgatttgtatttaatttgatgaaccaaatttaataaaaaaaattaacgaatcaaatta-aacctaaaagatatttatggtcagg 27067387  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  27067388 agttaccaa 27067396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 51488623 - 51488563
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  51488623 tgtttggtttgacttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 51488563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 4485299 - 4485229
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    |||||||||||| |||  ||||||||| ||| ||| ||| ||| ||||||||||||||| ||||| |||||    
T  4485299 aaattgagttttcaatattgtttggttagacattttagagttgattctatcctccaaaaacaattctcctt 4485229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 7385369 - 7385427
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaac 287  Q
    |||||||||||| |||| |||| ||||| |||||||||||  |||||||||||||||||    
T  7385369 caattctccttctttttactttgtaatttaatttgatgaatcaaatttaattagaaaac 7385427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 5271631 - 5271571
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  5271631 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 5271571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 7593331 - 7593271
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  7593331 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 7593271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 15353306 - 15353366
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  15353306 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 15353366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 26821460 - 26821520
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  26821460 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 26821520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 36496179 - 36496119
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  36496179 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 36496119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 38627616 - 38627676
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  38627616 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 38627676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 38843229 - 38843289
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  38843229 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 38843289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 50979363 - 50979303
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  50979363 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 50979303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 33006 - 32898
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||| || |||| ||||| |||||||||||||||||||||||||||    
T  33006 caattatccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacctaacgaaccaaatcagcccccgaaaaatatttatggtcatg 32907  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  32906 agttaccaa 32898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 33202 - 33107
Alignment:
Q  58 gattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctcc-aaaagcaattatcctt 152  Q
    |||||||| ||| | |||| |||||||||||||||| |||| | ||| ||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  33202 gattctacaatcctcaaaaatgaaaaattgagttttcaatgatatttagtttgacttttaaaaattgcttctattctccaaaaagcaattatcctt 33107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 45150752 - 45150860
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||  ||| |||||||||||||||||||| ||||||||||||    
T  45150752 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaatgaaccaaattagcccccgaaaaatgtttatggtcatg 45150851  T
Q  330 agttaccaa 338  Q
    | |||||||    
T  45150852 aattaccaa 45150860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 48254648 - 48254537
Alignment:
Q  54 aagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttg 153  Q
    |||||||||||| | ||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||     
T  48254648 aagtgattctacaaccttcaaaagtgaaaaactgagcttttaatggtgtttggtttgacttttaagaattgattatatcctccaaaagcaattatcctta 48254549  T
Q  154 aagctaccaatc 165  Q
    ||||||| ||||    
T  48254548 aagctacaaatc 48254537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 45150549 - 45150663
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||  | | | |||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  45150549 aagaagtgattctataaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatcc 45150648  T
Q  151 ttgaagctaccaatc 165  Q
    |||||||||| ||||    
T  45150649 ttgaagctacaaatc 45150663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 28182527 - 28182632
Alignment:
Q  233 ttctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagt 332  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||||||    
T  28182527 ttctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaagacttaacgaaccaaattagcccccgaaaaatatttatggtcatgagt 28182626  T
Q  333 taccaa 338  Q
    | ||||    
T  28182627 tgccaa 28182632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 30810862 - 30810970
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| || |||||||||||||| ||||||||| ||||||| || |||| |||||||||||||  ||||||||||||||||||    
T  30810862 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggtcatg 30810961  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  30810962 agttaccaa 30810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 39251427 - 39251541
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||| | |||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||| || |||||||||||| |||||||||    
T  39251427 aagaagtgattctacaacctttaaaagtgaaaaactgaatttttaatggtgtttgatttgacttttaagaattgattatatcctccaaaaacaattatcc 39251526  T
Q  151 ttgaagctaccaatc 165  Q
     | ||||||| ||||    
T  39251527 ctaaagctacaaatc 39251541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 11263845 - 11263949
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||| ||  ||| ||||||||||| |||||||| ||||||||||||    
T  11263845 caattctccttctttttgctttgtaattaatttgatgaacaaaattcaatcagaaaacttaatgaaccaaattagccctcgaaaaatgtttatggtcatg 11263944  T
Q  330 agtta 334  Q
    |||||    
T  11263945 agtta 11263949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 39251630 - 39251739
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||||||| ||||| ||  ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||| |||||||||||    
T  39251630 caattctccttctttttggttggtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcat 39251729  T
Q  329 gagttaccaa 338  Q
    || |||||||    
T  39251730 gacttaccaa 39251739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 42274671 - 42274779
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    ||||| |||||| |||| |||| ||||||||||||||||| |||||| || ||||||| || |||| |||||||||||||||||||| ||||| ||||||    
T  42274671 caattttccttctttttcctttgtaattaatttgatgaaccaaatttgatcagaaaacttatcgaaccaaattagcccccgaaaaatgtttatagtcatg 42274770  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  42274771 agttaccaa 42274779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 31813352 - 31813466
Alignment:
Q  51 aagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcc 150  Q
    ||||||||||||||  | | | |||||||||||  ||| |||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  31813352 aagaagtgattctataaccctcaaaagtgaaaagctgaattttcaatggtgtttagtttggcttttaagaattgattctatcctccaaaagcaattatcc 31813451  T
Q  151 ttgaagctaccaatc 165  Q
     ||||||||| ||||    
T  31813452 atgaagctacaaatc 31813466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 48181224 - 48181332
Alignment:
Q  231 aattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccg-aaaaatatttatggtcatg 329  Q
    |||||| |||| ||||||||| |||||||||| |||||| ||||||||| ||||||| || |||  |||||||||||||| |||||| ||||||||||||    
T  48181224 aattcttcttctttttgctttgtaattaatttcatgaaccaaatttaatcagaaaacttaacgagccaaattagcccccgaaaaaatgtttatggtcatg 48181323  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  48181324 agttaccaa 48181332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 42074546 - 42074650
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||| |    || |||  ||||||||||||||| ||||||||||||    
T  42074546 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaactt----aaccaagctagcccccgaaaaatgtttatggtcatg 42074641  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  42074642 agttaccaa 42074650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 28182352 - 28182429
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagcta 159  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  28182352 aaattgagttttcaatgttgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagcta 28182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 50392761 - 50392657
Alignment:
Q  233 ttctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagt 332  Q
    ||||||||| ||||| ||| || |||||||||||||| ||||||||| ||||||| || |||| |||||||||||||  |||||||||||||| ||||||    
T  50392761 ttctccttctttttgttttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggt-atgagt 50392663  T
Q  333 taccaa 338  Q
    ||||||    
T  50392662 taccaa 50392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 51229881 - 51229985
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||  ||||||||| ||||||| || |  | |||||||||||||||||||  ||||| ||||||    
T  51229881 caattctccttctttttgctttgtaattaatttgatgaatcaaatttaataagaaaacttaaccgaccaaattagcccccgaaaaaagtttatcgtcatg 51229980  T
Q  330 agtta 334  Q
    |||||    
T  51229981 agtta 51229985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 11257752 - 11257847
Alignment:
Q  19 tgtttgttttggcttttcagcatcaagaaggtaagaagtgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaa 118  Q
    ||||||||||||||||||||||||||||        ||||||||||| ||  | ||||||||||||||||||||| |||||||||||||||| |||||||    
T  11257752 tgtttgttttggcttttcagcatcaaga--------agtgattctacaattatcaaaagtgaaaaattgagttttcaatggtgtttggtttggcttttaa 11257843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 33025914 - 33025836
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||    
T  33025914 aaattgagttatcaatgttgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctac 33025836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 42074374 - 42074452
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  42074374 aaattgagttttcaatgctgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctac 42074452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 48254448 - 48254347
Alignment:
Q  230 caattctccttccttttgctttataatt-aatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||||||||| ||  |||| ||||||||||  ||||||| |||||||||||    
T  48254448 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaaggaattaaattagcccttgaaaaatgtttatggtcat 48254349  T
Q  329 ga 330  Q
    ||    
T  48254348 ga 48254347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 53687321 - 53687217
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||| | ||||| ||| ||||||| || | || |||||||||| || |||||| |||||| |||||    
T  53687321 caattctccttcattttgctttgtaattaatttgatgagccaaattaaataagaaaacttaaccaaccaaattagcctccaaaaaatgtttatgatcatg 53687222  T
Q  330 agtta 334  Q
    |||||    
T  53687221 agtta 53687217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 51407445 - 51407524
Alignment:
Q  81 aaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||| || | ||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||||    
T  51407445 aaaattgagtttttaaagttgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctac 51407524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 51407618 - 51407701
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaa 313  Q
    |||||||||||| ||||||||| |||||||||||||||||  |||||||| ||||||  || |||| |||||||||||||||||    
T  51407618 caattctccttctttttgctttgtaattaatttgatgaaccgaatttaatcagaaaatttaacgaaacaaattagcccccgaaa 51407701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 42274500 - 42274570
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    ||||||||||||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||| |||||    
T  42274500 aaattgagttttgaatgttgtttgatttggctttttagaattgattctatcctccaaaagcaattctcctt 42274570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 48181051 - 48181121
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatcctt 152  Q
    |||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  48181051 aaattgagttttcaatgttttttggtttgacattttagaattgcttctatcctccaaaagcaattctcctt 48181121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 53687493 - 53687429
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    |||||||||||| |||  ||||||||||||||||| | |||||||||||||||||||||||||||    
T  53687493 aaattgagttttcaatattgtttggtttgacttttcataattgcttctatcctccaaaagcaatt 53687429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 11263711 - 11263756
Alignment:
Q  120 aattgcttctatcctccaaaagcaattatccttgaagctaccaatc 165  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11263711 aattgcttctatcctccaaaagcaattatccttgaagctacaaatc 11263756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 51229709 - 51229787
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    |||||||||||| |||| ||||||||||  ||||| | |||||||||||||||||||||  |||| ||||| |||||||    
T  51229709 aaattgagttttcaatgttgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctac 51229787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 33025742 - 33025685
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaac 287  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| |||||||    
T  33025742 caattctccttctttttgctttgtaattaattcgatgaaccaaatttaatcagaaaac 33025685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 45489023 - 45488944
Alignment:
Q  259 atttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    ||||||||||| |||||||| |||||||  || |||| ||||||| || ||  |||||||||||||| ||||||||||||    
T  45489023 atttgatgaaccaaatttaactagaaaatttaacgaaccaaattaacctccagaaaatatttatggttatgagttaccaa 45488944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 44328806 - 44328914
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaac-gtagcgaatcaaattagcccccgaaaaatatttatggtcat 328  Q
    |||||||| ||| ||||| ||| || |||||||||| ||| ||||||||| | ||||  ||| |||| |||||||||||   |||||||||||||||||     
T  44328806 caattctcattctttttggtttgtatttaatttgataaaccaaatttaataaaaaaaaagtaacgaaccaaattagcccaa-aaaaatatttatggtcag 44328904  T
Q  329 gagttaccaa 338  Q
    ||||||||||    
T  44328905 gagttaccaa 44328914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 52692005 - 52692065
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||||||||||| ||| | || |||||||||||||||||| |  ||||||||||    
T  52692005 tgtttggtttgacttttaaaaatagattttatcctccaaaagcaattctagttgaagctac 52692065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 44610769 - 44610664
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||| ||||||| ||| | ||| || |||||||||||||| ||||||||| | ||||  || ||||||||||||| | ||  |||||||||||||| |||    
T  44610769 caatgctccttcttttcgatttgtatttaatttgatgaaccaaatttaatca-aaaatctaacgaatcaaattag-ctccataaaatatttatggt-atg 44610673  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  44610672 agttaccaa 44610664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 47141529 - 47141469
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  47141529 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 47141469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 47697077 - 47697137
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  47697077 tgtttggtttgccttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 47697137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 51129142 - 51129082
Alignment:
Q  100 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctac 160  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||    
T  51129142 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctac 51129082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 4268 - 4350
Alignment:
Q  256 ttaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaa 338  Q
    |||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||| |||||||    
T  4268 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaa 4350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 4047 - 4149
Alignment:
Q  57 tgattctacgatctttaaaagtgaaaaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaag 156  Q
    ||||||||| | ||| |||||||||||| ||| |||| |||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||| || |||    
T  4047 tgattctacaaccttcaaaagtgaaaaactgaatttttaatggtgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaag 4146  T
Q  157 cta 159  Q
    |||    
T  4147 cta 4149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 16965 - 17073
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| |||||| || ||||||||||||||||| ||||||| |||| |||| || |||| ||||||||||||  |||| | ||||||||||||    
T  16965 caattctccttctttttgcgttgtaattaatttgatgaaccaaatttatttaggaaacttaacgaaccaaattagccccgaaaaagtgtttatggtcatg 17064  T
Q  330 agttaccaa 338  Q
    |||||||||    
T  17065 agttaccaa 17073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 16797 - 16861
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaatt 146  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  16797 aaattgagttttcaatgttgtttggtttggctttttagaattgattctatcctccaaaagcaatt 16861  T

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Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 91690 - 91798
Alignment:
Q  230 caattctccttccttttgctttataattaatttgatgaacaaaatttaattagaaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 329  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||||||| | ||||||  || |||| ||||| ||||||  |||| | ||||||||||||    
T  91690 caattctccttctttttgctttgtaattaatttgatgaaccaaatttattcagaaaatttaacgaaccaaatcagccccgaaaaagtgtttatggtcatg 91789  T
Q  330 agttaccaa 338  Q
    | |||||||    
T  91790 aattaccaa 91798  T

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Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 91516 - 91579
Alignment:
Q  82 aaattgagttttgaatggtgtttggtttgacttttaagaattgcttctatcctccaaaagcaat 145  Q
    |||||||||||| ||||  |||||||||| ||||| ||||||| ||||||||||||||||||||    
T  91516 aaattgagttttcaatgtagtttggtttggctttttagaattgattctatcctccaaaagcaat 91579  T

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