View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_31 (Length: 442)

Name: NF4445_low_31
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_31
NF4445_low_31
[»] chr1 (11 HSPs)
chr1 (60-285)||(35294329-35294565)
chr1 (13-61)||(35294606-35294654)
chr1 (188-279)||(22679489-22679580)
chr1 (173-282)||(14760022-14760130)
chr1 (173-262)||(16706354-16706443)
chr1 (143-247)||(8819310-8819413)
chr1 (173-281)||(30748951-30749059)
chr1 (173-281)||(30770402-30770510)
chr1 (188-254)||(20171415-20171480)
chr1 (126-207)||(35215095-35215176)
chr1 (397-426)||(35294144-35294173)
[»] chr3 (19 HSPs)
chr3 (126-256)||(2928119-2928249)
chr3 (149-280)||(45405025-45405155)
chr3 (188-280)||(30430271-30430363)
chr3 (126-256)||(25799426-25799553)
chr3 (126-256)||(30172407-30172537)
chr3 (173-282)||(4304142-4304251)
chr3 (139-282)||(30172070-30172211)
chr3 (173-256)||(30173600-30173683)
chr3 (126-283)||(28725613-28725771)
chr3 (192-278)||(41993143-41993229)
chr3 (192-262)||(44094309-44094379)
chr3 (137-282)||(43907831-43907975)
chr3 (216-284)||(4304338-4304406)
chr3 (143-221)||(2928467-2928545)
chr3 (143-181)||(29491468-29491506)
chr3 (190-256)||(34502627-34502693)
chr3 (173-282)||(6931088-6931197)
chr3 (173-246)||(44094187-44094260)
chr3 (126-246)||(45404832-45404950)
[»] chr7 (19 HSPs)
chr7 (143-280)||(20164620-20164757)
chr7 (126-256)||(29635604-29635734)
chr7 (143-281)||(29635235-29635372)
chr7 (173-256)||(7760745-7760828)
chr7 (173-283)||(7760606-7760716)
chr7 (170-256)||(31198323-31198409)
chr7 (143-256)||(47740975-47741088)
chr7 (173-256)||(37081243-37081325)
chr7 (173-282)||(19105255-19105363)
chr7 (188-256)||(20165004-20165072)
chr7 (173-281)||(31198446-31198553)
chr7 (143-283)||(35303852-35303992)
chr7 (143-256)||(35304168-35304281)
chr7 (144-282)||(3555364-3555498)
chr7 (192-256)||(23797211-23797275)
chr7 (167-282)||(19105397-19105511)
chr7 (173-284)||(31172173-31172283)
chr7 (192-278)||(31172342-31172428)
chr7 (188-281)||(12821179-12821272)
[»] chr4 (12 HSPs)
chr4 (147-262)||(17430732-17430848)
chr4 (142-256)||(17431077-17431191)
chr4 (143-257)||(32186586-32186699)
chr4 (204-282)||(33752712-33752790)
chr4 (143-276)||(17615602-17615734)
chr4 (143-262)||(32185300-32185417)
chr4 (143-261)||(33752322-33752438)
chr4 (230-283)||(17168382-17168434)
chr4 (230-283)||(17173954-17174006)
chr4 (188-259)||(28687624-28687695)
chr4 (126-168)||(25593792-25593834)
chr4 (204-282)||(28687460-28687538)
[»] chr8 (12 HSPs)
chr8 (126-283)||(29242773-29242929)
chr8 (143-256)||(37037222-37037334)
chr8 (143-283)||(14148804-14148942)
chr8 (173-256)||(9861593-9861676)
chr8 (173-279)||(6906421-6906527)
chr8 (173-282)||(33892184-33892293)
chr8 (144-280)||(27503609-27503745)
chr8 (164-282)||(6906263-6906380)
chr8 (192-281)||(31212313-31212402)
chr8 (143-256)||(14148421-14148533)
chr8 (173-282)||(15229615-15229724)
chr8 (143-247)||(29242465-29242569)
[»] chr2 (16 HSPs)
chr2 (143-256)||(26403031-26403144)
chr2 (157-282)||(18509496-18509621)
chr2 (199-280)||(980920-981000)
chr2 (173-282)||(43130291-43130399)
chr2 (173-256)||(981065-981147)
chr2 (143-256)||(18560521-18560633)
chr2 (188-281)||(20972385-20972478)
chr2 (173-282)||(7328332-7328441)
chr2 (205-282)||(16192593-16192670)
chr2 (143-251)||(8185251-8185359)
chr2 (173-256)||(37897600-37897683)
chr2 (173-260)||(40152719-40152806)
chr2 (173-255)||(12874828-12874910)
chr2 (128-262)||(30714141-30714274)
chr2 (192-257)||(27847999-27848064)
chr2 (230-282)||(39786315-39786367)
[»] scaffold0577 (1 HSPs)
scaffold0577 (143-253)||(1636-1745)
[»] chr5 (19 HSPs)
chr5 (143-284)||(38900220-38900360)
chr5 (137-284)||(38298691-38298838)
chr5 (147-280)||(8086659-8086792)
chr5 (173-282)||(25906106-25906214)
chr5 (170-282)||(6843081-6843193)
chr5 (188-280)||(25905959-25906051)
chr5 (143-283)||(29673289-29673428)
chr5 (217-279)||(22297764-22297826)
chr5 (215-280)||(2858411-2858475)
chr5 (229-281)||(2846573-2846625)
chr5 (160-256)||(15773702-15773798)
chr5 (139-194)||(3936051-3936106)
chr5 (173-256)||(20510443-20510526)
chr5 (216-278)||(13657552-13657614)
chr5 (147-200)||(2858461-2858514)
chr5 (143-196)||(5160733-5160786)
chr5 (147-256)||(12272527-12272635)
chr5 (235-284)||(17048064-17048113)
chr5 (232-284)||(33626007-33626059)
[»] chr6 (8 HSPs)
chr6 (146-256)||(7359541-7359650)
chr6 (188-284)||(13340440-13340536)
chr6 (190-282)||(31298723-31298815)
chr6 (173-256)||(34637572-34637655)
chr6 (188-282)||(31298887-31298981)
chr6 (170-256)||(12290005-12290091)
chr6 (217-254)||(14365120-14365157)
chr6 (143-282)||(6190568-6190706)
[»] scaffold0042 (1 HSPs)
scaffold0042 (126-284)||(30308-30465)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 60 - 285
Target Start/End: Complemental strand, 35294565 - 35294329
Alignment:
Q  60 gtgataatttgacaacctaaaatggttgtcattctatcattttcacaacatnnnnnnntaataaagattaaaa-----------tatttaaagattagac 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |           ||||||||| ||||||    
T  35294565 gtgataatttgacaacctaaaatggttgtcattctatcattttcacaacataaaaaaataataaagattaagaaatagttgatatatttaaaggttagac 35294466  T
Q  149 atgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttga 248  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  35294465 atgagttgactaaaaagtatagactaatttcatgaatgtaaaattttggagggaccaaaagcctcagaaatattttcgatggactaaaatcaaatgttga 35294366  T
Q  249 tatatttaaagggatcgtttaattatttaaccctttc 285  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35294365 tatatttaaagggatcatttaattatttaaccctttc 35294329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35294654 - 35294606
Alignment:
Q  13 aaagtaatgacaaattatgttacactagcttgtaagtttttaaattcgt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35294654 aaagtaatgacaaattatgttacactagcttgtaagtttttaaattcgt 35294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 22679489 - 22679580
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaac 279  Q
    |||| ||| |||||| ||||| ||| |  |||||||| || ||||||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  22679489 aaaaatttagagggaccaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaac 22679580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 14760022 - 14760130
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||  ||| |||||||| | |||| ||||||||| |  |||||||| |  ||| ||||||||||||||| ||||||||| |||||| |||| ||    
T  14760022 taatttcatagatgaaaaattttag-gggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttactt 14760120  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  14760121 atttaaccct 14760130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 16706443 - 16706354
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaaggga 262  Q
    |||||||||  ||| |||||||| || ||| ||||||||| | ||| ||||| || ||||||||||||||||||| |||||||| |||||    
T  16706443 taatttcatagatgaaaaattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagaggga 16706354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 8819310 - 8819413
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatgg--actaaaatca 240  Q
    ||||||||||||||||||||||| |  || |||||| ||  ||| ||||||||||||||  ||||| ||| |||||||||||  ||||  ||||||||||    
T  8819310 ttagacatgagttgactaaaaagcaaggactaatttaattgatgaaaaattttggaggg-ccaaaaacctaaggaatatttt--atggatactaaaatca 8819406  T
Q  241 aatgttg 247  Q
    |||||||    
T  8819407 aatgttg 8819413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 30749059 - 30748951
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||  ||| ||||||||| ||||| ||||||||| | ||||||||| |  ||||||||||||||| ||  ||||||||   ||| | |||| ||    
T  30749059 taatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttactt 30748960  T
Q  273 atttaaccc 281  Q
    |||||||||    
T  30748959 atttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 30770510 - 30770402
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||  ||| ||||||||| ||||| ||||||||| | ||||||||| |  ||||||||||||||| ||  ||||||||   ||| | |||| ||    
T  30770510 taatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttactt 30770411  T
Q  273 atttaaccc 281  Q
    |||||||||    
T  30770410 atttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 20171480 - 20171415
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatt 254  Q
    ||||||||| ||||| |||||| || || |||||||| || ||||||||||||||||||| ||||||    
T  20171480 aaaattttg-agggaccaaaagtctaagaaatattttagagggactaaaatcaaatgttggtatatt 20171415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 35215176 - 35215095
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaa 207  Q
    ||||||| || ||||  |||||||||| ||||||||||||||  ||||||||||||| ||  ||  |||| |||||||||||    
T  35215176 attaaaaaatataaaagttagacatgaattgactaaaaagtaaggattaatttcatggattaaattttttagagggatcaaa 35215095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Complemental strand, 35294173 - 35294144
Alignment:
Q  397 gttgctaatgctaatgctagtgctagtaat 426  Q
    ||||||||||||||||||||||||||||||    
T  35294173 gttgctaatgctaatgctagtgctagtaat 35294144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 2928249 - 2928119
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| |||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||| ||||||||| ||||| |||||     
T  2928249 attaaaaaatatgaaggttagacatgagttgactaaaaattatggactaatttcatgaatggaaaattttggagggaccaaaagcctaaggaaaatttta 2928150  T
Q  226 gatggactaaaatcaaatgttgatatattta 256  Q
    || |||||| |||||||||||| ||||||||    
T  2928149 gagggactagaatcaaatgttggtatattta 2928119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 45405025 - 45405155
Alignment:
Q  149 atgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttga 248  Q
    |||||||||||||||||||| || |||||||||  ||  |||||||||||||||  |||||||| | ||||||||| |  ||||||||||||||||||      
T  45405025 atgagttgactaaaaagtatggactaatttcatagata-aaaattttggagggactaaaagcctaaagaatattttagggggactaaaatcaaatgttag 45405123  T
Q  249 tatatttaaagggatcgtttaattatttaacc 280  Q
    ||||||||| ||||  ||| | ||||||||||    
T  45405124 tatatttaaggggacagttaacttatttaacc 45405155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 30430363 - 30430271
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    |||||||| |||||| ||||||||| | ||||||||| || | ||||||||||||||||| |||||||| ||||| | |||| ||||||||||    
T  30430363 aaaattttagagggaccaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 25799426 - 25799553
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | |||||||||||||||||||||||||||||  ||||||||||| | ||| ||||||||| ||||| ||||||  ||  |||||||||     
T  25799426 attaaaaaatatgaagattagacatgagttgactaaaaagtagggattaatttcacggatg-aaaattttgcagggaccaaaag--tctagaatatttta 25799522  T
Q  226 gatggactaaaatcaaatgttgatatattta 256  Q
     |  ||||||||| |||||||| ||||||||    
T  25799523 aagagactaaaattaaatgttggtatattta 25799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 30172407 - 30172537
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| |||||||||| ||||||||||||||| || ||||||| |  ||| ||||||||| | ||||||||||||| || ||||||||     
T  30172407 attaaaaaatatgaaggttagacatgatttgactaaaaagtatggactaatttcttagatggaaaattttgaaaggatcaaaagcctaagtaatattttg 30172506  T
Q  226 gatggactaaaatcaaatgttgatatattta 256  Q
    ||  || | || |||||||||| ||||||||    
T  30172507 gaatgattgaagtcaaatgttggtatattta 30172537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 4304251 - 4304142
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||  |||||||||||| || ||| ||||||| | || |||||||| |  ||||||||||||||||||| ||||||||| ||||   |||| ||    
T  4304251 taatttcatatatgtaaaattttagaaggaccaaaagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttattt 4304152  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  4304151 atttaaccct 4304142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 282
Target Start/End: Complemental strand, 30172211 - 30172070
Alignment:
Q  139 aagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaat 238  Q
    ||||||| |||||||| ||||||||| || ||| |||||||||| ||| ||||||||| |   | ||||| ||| | |||||||||    ||||||||||    
T  30172211 aagattaaacatgagt-gactaaaaattagagactaatttcatggatgaaaaattttgtaaa-accaaaaacctaaagaatattttaaggggactaaaat 30172114  T
Q  239 caaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    ||||||||||||||||||  |||| | |||| ||||||||||||    
T  30172113 caaatgttgatatatttagggggaccatttacttatttaaccct 30172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 30173600 - 30173683
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||||||  || ||||||||| |||||||||||||||| | ||| ||||| |  ||||||||||||||| ||| ||||||||    
T  30173600 taatttcatagatataaaattttagagggatcaaaagcctaaagaaaattttagggggactaaaatcaaatattggtatattta 30173683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 28725613 - 28725771
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| ||||||||||||||||||||||  | ||| |||||||||| ||| ||  ||||||||||| ||||| ||| | |||||||||     
T  28725613 attaaaaaatatgaaggttagacatgagttgactaaaaa-aaaagactaatttcatggatgaaattttttggagggaccaaaaacctaatgaatatttt- 28725710  T
Q  226 gatggactaaaatcaaatgttg---atatatttaaagggatcgtttaattatttaaccctt 283  Q
    |   ||||||||||||||||||    ||||||||  |||| | |||| |||||||||||||    
T  28725711 gggagactaaaatcaaatgttggtattatatttagggggaccatttacttatttaaccctt 28725771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 41993143 - 41993229
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 278  Q
    |||| |||||||||||||||| |  |||||||| |   || ||||||||||| ||||||||||||| | ||||||||| ||||||||    
T  41993143 ttttagagggatcaaaagcctaaaaaatattttagggagattaaaatcaaatattgatatatttaatgtgatcgtttacttatttaa 41993229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 44094309 - 44094379
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaaggga 262  Q
    ||||||||||| ||||| ||| || |||||||||    |||||||||||||||||||||||||||| ||||    
T  44094309 ttttggagggaccaaaaccctaagaaatattttcaggagactaaaatcaaatgttgatatatttaagggga 44094379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 43907831 - 43907975
Alignment:
Q  137 taaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaa 236  Q
    ||||||||| ||||||| | | |||||||||   |||||||| ||| ||| ||||||||| ||| |  |||| ||| |  |||||||| |  ||||||||    
T  43907831 taaagattaaacatgagctaattaaaaagtaggtattaattttatggatgaaaaattttgaaggaacaaaaaacctaaaaaatattttagggggactaaa 43907930  T
Q  237 atcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    ||||||| ||  ||||||||| |||||| |||| ||||||||||||    
T  43907931 atcaaatattagtatatttaa-gggatcatttacttatttaaccct 43907975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 4304338 - 4304406
Alignment:
Q  216 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    ||||||||| || ||||||||||||||||||| ||||||||  | |||  |||| ||||||||||||||    
T  4304338 gaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaacccttt 4304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 2928467 - 2928545
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatat 221  Q
    ||||||||||||||| |||||||||  ||||||||||||  ||  |||||||| | |||| |||||| || ||||||||    
T  2928467 ttagacatgagttgaataaaaagtaaggattaatttcatagatagaaaattttagtgggaccaaaagtctaaggaatat 2928545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 29491506 - 29491468
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcat 181  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  29491506 ttagacatgagttgactaaaaagtatgaattaatttcat 29491468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 34502693 - 34502627
Alignment:
Q  190 aattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||| ||||||  |||||||| |  ||||||||  | ||||||||||||||||||||||||||||    
T  34502693 aattttagagggacgaaaagcctaaaaaatattttatagggactaaaatcaaatgttgatatattta 34502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 6931088 - 6931197
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||  |||| |||||||| ||| |||||||| ||| || ||| ||||  | ||||||||||||||||||  |||||||||  |||   |||| ||    
T  6931088 taatttcaaaaatgaaaaattttagagagatcaaaaacctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttactt 6931187  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  6931188 atttaaccct 6931197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 44094260 - 44094187
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgtt 246  Q
    |||||||||||||  || |||||  ||||| ||||||||| || |||||||| || ||| ||||||||||||||    
T  44094260 taatttcatgaataaaatattttaaagggaccaaaagcctaagaaatattttagaaggattaaaatcaaatgtt 44094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 45404950 - 45404832
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| ||||||||||||||||| |||||||  || |||||| ||| |||   ||||||||||||| || ||  || |||||||||||     
T  45404950 attaaaaaatatgaaggttagacatgagttgactgaaaagtaaggactaattttatggatg--gaattttggagggaccagaaatctaaggaatatttta 45404853  T
Q  226 gatggactaaaatcaaatgtt 246  Q
    |   |||||||||||||||||    
T  45404852 gggagactaaaatcaaatgtt 45404832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 20164757 - 20164620
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||| | | ||||| |||||  |  |||||||||||||    
T  20164757 ttagacatgagttgactaaaaagtagggattaatttcatgaatgaaaaattttggagggaccaaaaacttaaggaaaattttaaaatgactaaaatcaaa 20164658  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    ||||| ||||||| | |||| | |||| ||||||||||    
T  20164657 tgttggtatattttaggggaccatttacttatttaacc 20164620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 29635604 - 29635734
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| |||||||||||||||||||||||||  || |||||| ||| |||||||| |||||||||| ||||| | | |  ||||||||     
T  29635604 attaaaaaatatgaaggttagacatgagttgactaaaaagtagggactaattttatggatgtaaaactttggagggaccaaaatcttaaaaaatatttta 29635703  T
Q  226 gatggactaaaatcaaatgttgatatattta 256  Q
    |  | ||||||||||||||||||||||||||    
T  29635704 ggagaactaaaatcaaatgttgatatattta 29635734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 281
Target Start/End: Complemental strand, 29635372 - 29635235
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||| |||||| | |||||||| ||  || ||||| |||| ||| |||||||| |||||| |||||| || ||||||||||| |  ||||||||||||||    
T  29635372 ttagtcatgagctaactaaaaaatagggactaattacatgtatgaaaaattttagagggaccaaaagtctaaggaatattttagg-ggactaaaatcaaa 29635274  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaaccc 281  Q
    ||||||||||||||  |||| | |||| |||||||||||    
T  29635273 tgttgatatatttagggggaccatttacttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 7760745 - 7760828
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||||||| ||| ||| ||||||||||| ||||||||| || ||||||||  | ||||||||||||||||||| ||||||||    
T  7760745 taatttcatggatgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatattta 7760828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 7760716 - 7760606
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||| ||| | ||||||||||||| ||||||||| | ||||||||| |  |||||||||||| ||| || |||||||| | ||||  |||| ||    
T  7760716 taatttcatggatgaacaattttggagggaccaaaagcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttactt 7760617  T
Q  273 atttaaccctt 283  Q
    |||||||||||    
T  7760616 atttaaccctt 7760606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 31198409 - 31198323
Alignment:
Q  170 gattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||||||||| |||| |||||||| |||||||||| | ||| |  |||||||| || ||||||||||||||||||| ||||||||    
T  31198409 gattaatttcataaatgaaaaattttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatattta 31198323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 47740975 - 47741088
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||  ||  ||||||| ||| ||||||||| || |||||||| |  ||||| |||| |||    
T  47740975 ttagacaagagttgactaaaatgtatgaattaatttcatgaattaaattttttggaaggagcaaaagcctaagaaatatttttgggggactgaaattaaa 47741074  T
Q  243 tgttgatatattta 256  Q
    ||||| ||||||||    
T  47741075 tgttggtatattta 47741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 37081243 - 37081325
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||||| |||| |||||||| |||||| ||||| ||| ||||||||||| |  |||||||||||||| |||||||||||||    
T  37081243 taatttcataaatg-aaaattttagagggaccaaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatattta 37081325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 19105363 - 19105255
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||| |||| |||||| | |||||| ||||||||| | ||||||||| || ||||||||||| ||||||  ||||||||   ||||| |||| ||    
T  19105363 taatttcataaatgaaaaattatagagggaccaaaagcctaaagaatattttaga-ggactaaaatcgaatgttagtatatttatgcggatcttttactt 19105265  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  19105264 atttaaccct 19105255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 20165004 - 20165072
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||| | |||||||||||| ||| | ||||||||| || ||||||||||||||||||| ||||||||    
T  20165004 aaaattgtagagggatcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatattta 20165072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 31198446 - 31198553
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||  ||| |||||||| |||||  ||||||||| || |||||||| |  | ||||||||||||||||| ||||||||||||||   |||| ||    
T  31198446 taatttcatagatgaaaaattttagagggc-caaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttactt 31198544  T
Q  273 atttaaccc 281  Q
    |||||||||    
T  31198545 atttaaccc 31198553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 35303992 - 35303852
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||| ||||||||||  || |||||||||| ||  ||| |||| |||||| ||||| |||||  |||||||  |  | |||||||| |||    
T  35303992 ttagacatgagttgtctaaaaagtacggactaatttcatggattgaaagttttagagggaccaaaaacctcaaaaatatttaaggggaactaaaattaaa 35303893  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    | |||||||||||   |||| | | ||||||||||||||||    
T  35303892 tattgatatatttcgggggaccatgtaattatttaaccctt 35303852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 35304168 - 35304281
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||||||||||| |||||||||  || | |||||||  ||| ||||||| |||| || |||||| || |  |||||||| |  |||||||||||||     
T  35304168 ttagacatgagttgattaaaaagtaaggactgatttcattgatggaaaatttcggagagaccaaaagactaactaatattttaggcggactaaaatcaat 35304267  T
Q  243 tgttgatatattta 256  Q
    ||||| ||||||||    
T  35304268 tgttggtatattta 35304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 3555498 - 3555364
Alignment:
Q  144 tagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaat 243  Q
    ||||||||||||||||||||||||   | ||| || || ||   |||| |||||||||| ||||| ||| || |||||||| |  |||||||||||||||    
T  3555498 tagacatgagttgactaaaaagtaggtaataaattgataaa---aaaaatttggagggaccaaaa-cctaagaaatattttagggggactaaaatcaaat 3555403  T
Q  244 gttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    |||| ||||||||  |||| | |||  ||||||||||||    
T  3555402 gttggtatatttagggggaccatttgcttatttaaccct 3555364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 23797211 - 23797275
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||| |||||| |||||  || || |||||||| || ||||||||||||||||||||||||||||    
T  23797211 ttttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatatattta 23797275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 19105397 - 19105511
Alignment:
Q  167 atagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgt 266  Q
    ||||| ||||||||| |||| |||||||| |||||| ||||||||| | ||||| |||    |||||||||||||| |||| ||||||||  ||||   |    
T  19105397 atagactaatttcataaatg-aaaattttagagggaccaaaagcctaaagaatagtttaaggggactaaaatcaaaagttggtatatttagggggactat 19105495  T
Q  267 ttaattatttaaccct 282  Q
    ||| ||||||||||||    
T  19105496 ttacttatttaaccct 19105511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 31172283 - 31172173
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||| |||| |||| ||| ||||||||||||| || |  ||||||||  | ||| ||||||||||||||||||||||| ||| |    |||| ||    
T  31172283 taatttcataaatgaaaaactttagagggatcaaaagtctaaaaaatattttata-ggagtaaaatcaaatgttgatatatttgaagaggctatttattt 31172185  T
Q  273 atttaacccttt 284  Q
    ||||||||||||    
T  31172184 atttaacccttt 31172173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 31172342 - 31172428
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 278  Q
    |||| |||||| ||||| ||| |  |||||||| |  ||| ||||||||||||||  |||||||||||||||| |||| ||||||||    
T  31172342 ttttagagggaccaaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttatttaa 31172428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 12821272 - 12821179
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 281  Q
    |||||||| |||| | ||||||||| |  |||||||| |  ||| |||||||||| |||| ||||||||| |||| | |||| |||||||||||    
T  12821272 aaaattttagaggaaccaaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccatttacttatttaaccc 12821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 17430848 - 17430732
Alignment:
Q  147 acatgagttgactaaaaa-gtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgt 245  Q
    |||||||||||||||||| ||| ||| ||||||| |||||| ||||||||| || |||||||||||| ||||||||||| || |||||||||||||||||    
T  17430848 acatgagttgactaaaaaagtaaagactaatttcttgaatggaaaattttgaagagatcaaaagcctaaggaatattttagagggactaaaatcaaatgt 17430749  T
Q  246 tgatatatttaaaggga 262  Q
    || |||||||| |||||    
T  17430748 tggtatatttagaggga 17430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 17431077 - 17431191
Alignment:
Q  142 attagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaa 241  Q
    ||||||||||| || |||||||||||  ||||||||||||| ||| ||| ||||||||||| ||||||||| |  |||||||| |  |||||||||||||    
T  17431077 attagacatgaattaactaaaaagtagggattaatttcatggatgaaaatttttggagggaccaaaagcctaaaaaatattttagggggactaaaatcaa 17431176  T
Q  242 atgttgatatattta 256  Q
    |||||||||||||||    
T  17431177 atgttgatatattta 17431191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 32186586 - 32186699
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||  |||||||   |||||||||||| |||| |||||||| ||| || ||||||||| | ||||||||| || | |||||||| |||    
T  32186586 ttagacatgagttgaacaaaaagtggggattaatttcataaatg-aaaattttagagagaccaaaagcctaaagaatattttagaggaactaaaattaaa 32186684  T
Q  243 tgttgatatatttaa 257  Q
    ||||| |||||||||    
T  32186685 tgttggtatatttaa 32186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 33752712 - 33752790
Alignment:
Q  204 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    ||||||||| | ||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  33752712 caaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaaccct 33752790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 17615734 - 17615602
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||| ||||||||||||||  || |||||||||  ||| |||||||||| ||||  |||||||| ||  ||||||| |  ||||||||||||||    
T  17615734 ttagacatgaattgactaaaaagtagggactaatttcatagatggaaaattttgg-gggactaaaagcctaagatatattttaggaggactaaaatcaaa 17615636  T
Q  243 tgttgatatatttaaagggatcgtttaattattt 276  Q
    | || ||||||||| |||| || |||| ||||||    
T  17615635 tattcatatatttagaggggtcatttacttattt 17615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 32185417 - 32185300
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||| ||||||||| | ||| || ||||||||||| || |||||||| ||| || ||| | ||| || ||| |||| || ||||||||||||||    
T  32185417 ttagacatgatttgactaaagaatatggactaatttcatgattgaaaaattttagagagaccaacaacctaag-aat-ttttagagggactaaaatcaaa 32185320  T
Q  243 tgttgatatatttaaaggga 262  Q
    ||||| |||||||| |||||    
T  32185319 tgttggtatatttagaggga 32185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 33752438 - 33752322
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||| ||  || |||||||||  ||| ||||||||  |||  | |||||||  || |||||||| |  ||||||||||||||    
T  33752438 ttagacatgagttgactaaaaattaaggactaatttcatagatggaaaattttaaaggact-aaaagccaaag-aatattttagggggactaaaatcaaa 33752341  T
Q  243 tgttgatatatttaaaggg 261  Q
    | |||||||||||||||||    
T  33752340 tattgatatatttaaaggg 33752322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 17168434 - 17168382
Alignment:
Q  230 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  17168434 gactaaaattaaatattgatatatttaaa-ggatcttttaattatttaaccctt 17168382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 17174006 - 17173954
Alignment:
Q  230 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    ||||||||| |||||||||||||||||||  |||| ||||||||||||||||||    
T  17174006 gactaaaattaaatgttgatatatttaaa-cgatcttttaattatttaaccctt 17173954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 28687624 - 28687695
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaag 259  Q
    |||||||| |||||| ||||| ||| |  |||||||| ||   |||||||||||||||||||||||||||||    
T  28687624 aaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaaag 28687695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 25593834 - 25593792
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtat 168  Q
    |||||||||| | ||| ||||||||||||||||||||||||||    
T  25593834 attaaaatatatgaaggttagacatgagttgactaaaaagtat 25593792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 28687538 - 28687460
Alignment:
Q  204 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    ||||||| | ||||||||||| ||  || |||||| |||||||| ||||||||||||| || ||||  |||||||||||    
T  28687538 caaaagcataaggaatattttagagagattaaaattaaatgttggtatatttaaagggctcatttacatatttaaccct 28687460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 29242773 - 29242929
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||| | ||| ||| || ||| ||||     
T  29242773 attaaaaaatatgaaggttagacatgagttgactaaaaaatatggattaatttcatgaatgaaaatttttggagggaccgaaaacctaagaaatttttta 29242872  T
Q  226 gatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    || |||||||||||||||||||||| |||| | ||||   |||| |||||||||||||    
T  29242873 gagggactaaaatcaaatgttgata-attttaggggacaatttacttatttaaccctt 29242929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 37037222 - 37037334
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||  ||||| ||||||  | ||||||||||| || ||||||||||||||    
T  37037222 ttagacatgagttgactaaaaagtatggattaatttcatggatgaaaaatttt-aagggaccaaaagtataaggaatattttagagggactaaaatcaaa 37037320  T
Q  243 tgttgatatattta 256  Q
    |||||  |||||||    
T  37037321 tgttggaatattta 37037334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 14148804 - 14148942
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||||||  |  |||||||||  ||| ||||||||||| ||| ||||||||| |  ||||| || |  ||||||||||||||    
T  14148804 ttagacatgagttgactaaaaagtagggtctaatttcatatatgaaaaattttgga-ggaccaaaagcctaaaaaatatgttagggggactaaaatcaaa 14148902  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    ||||| |||||||||| ||||| |||| |||||||| ||||    
T  14148903 tgttggtatatttaaa-ggatcatttagttatttaaacctt 14148942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 9861676 - 9861593
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||||| |||| |||||||| |||||| ||||||||| | |||||||||  | ||||||||||||||||||||||||||||    
T  9861676 taatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatattta 9861593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 6906421 - 6906527
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||| ||| ||| ||| ||||||||||||||||||||| |  ||||||||    ||||||||||||||||||| ||||||||  |||| |||||| ||    
T  6906421 taatttaatggatgaaaatttttggagggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgtttactt 6906520  T
Q  273 atttaac 279  Q
    |||||||    
T  6906521 atttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 33892184 - 33892293
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||| |||| |||||||| |||||| ||||| | | | |||||||||  | ||||||||||||||||||| |||||||||   ||| ||||| ||    
T  33892184 taatttcataaatgaaaaattttagagggaccaaaaacataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttactt 33892283  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  33892284 atttaaccct 33892293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 27503609 - 27503745
Alignment:
Q  144 tagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatgg--actaaaatcaa 241  Q
    ||||||| ||||||| |||||||| | | | |||||||||||| |||||||  |||||| ||||||||| |  ||||||||  ||||  |||||||||||    
T  27503609 tagacataagttgacgaaaaagtagaaactgatttcatgaatgaaaaatttcagagggaccaaaagcctaaataatatttt--atggaaactaaaatcaa 27503706  T
Q  242 atgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    || |||||||||||||  | ||| |||| ||||||||||    
T  27503707 atattgatatatttaagtgaatcatttacttatttaacc 27503745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 6906380 - 6906263
Alignment:
Q  164 agtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggat 263  Q
    ||||| || |||||||||| ||| ||||||||||| ||| ||||||||| |||||||||||    ||||| ||||||||||||| ||||||||  ||||     
T  6906380 agtatggactaatttcatggatgaaaaattttggaaggaccaaaagcctaaggaatattttatggggact-aaatcaaatgttggtatatttagggggac 6906282  T
Q  264 cgtttaattatttaaccct 282  Q
      |||| ||||||||||||    
T  6906281 tatttacttatttaaccct 6906263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 31212402 - 31212313
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 281  Q
    |||| |||||| ||||||||| | |||||||||    ||||||||||||||||||||||||||||| ||||   |||| |||||||||||    
T  31212402 ttttagagggaccaaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 14148533 - 14148421
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatc-aaaagcctcaggaatattttcgatggactaaaatcaa 241  Q
    |||| ||||||||||||||||| ||| || |||||||||  ||| ||| ||||  ||||| | |||| ||| || |||||||| |  |||||||||||||    
T  14148533 ttaggcatgagttgactaaaaaatatggactaatttcatagatgaaaattttt--agggaactaaaaacctaagaaatattttaggaggactaaaatcaa 14148436  T
Q  242 atgttgatatattta 256  Q
    |||||||||||||||    
T  14148435 atgttgatatattta 14148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 15229724 - 15229615
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||| |||  |||||||| ||||||||||||| |  | |||||||||  | |||||||||| |||||||| ||||||||| || |   |||| ||    
T  15229724 taatttcataaataaaaaattttagagggatcaaaagtcaaaagaatattttatagggactaaaataaaatgttggtatatttaagggaactatttactt 15229625  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  15229624 atttaaccct 15229615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 29242569 - 29242465
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||||||||||| || ||| |||  |||||||||||  ||  ||| |||| |||| | ||||||||| | ||||||||| || |||||||||| |||    
T  29242569 ttagacatgagttgaatagaaaatatgaattaatttcatagataaaaacttttagaggaaccaaaagcctaatgaatattttagagggactaaaataaaa 29242470  T
Q  243 tgttg 247  Q
    |||||    
T  29242469 tgttg 29242465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 26403144 - 26403031
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||  || ||||||||| | ||||||||| |  ||||||||||||||    
T  26403144 ttagacatgagttgactaaaaagtatggattaatttcattaatgaaaaattttagacagaccaaaagcctgaagaatattttagggggactaaaatcaaa 26403045  T
Q  243 tgttgatatattta 256  Q
    | || |||||||||    
T  26403044 ttttaatatattta 26403031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 18509621 - 18509496
Alignment:
Q  157 actaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||||||| ||| |||||| |   ||| ||||||||||||||| ||||| ||  ||||||||||| || ||||||||||||||||||| ||||||||    
T  18509621 actaaaaagtagagactaattttacagatggaaaattttggagggaccaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatattta 18509522  T
Q  257 aagggatcgtttaattatttaaccct 282  Q
      |||| | |||||||||||||||||    
T  18509521 gggggaccatttaattatttaaccct 18509496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 981000 - 980920
Alignment:
Q  199 gggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    |||| ||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  981000 gggaccaaaagcctaagaaatattttaga-ggactaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 43130291 - 43130399
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||| ||||| || ||||| |||||||||| || ||||||||  | || | |||| ||    
T  43130291 taatttcatgaatggaaaattttggagggaccaaaagcctaaggaaaattttggagggactgaaatcaaatg-tggtatatttagggagaccatttactt 43130389  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  43130390 atttaaccct 43130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 981065 - 981147
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||||| |||| |||||||| |||||| ||||||||| | ||||||||| |  ||||||||||||||||||| ||||||||    
T  981065 taatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttagg-ggactaaaatcaaatgttggtatattta 981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 18560633 - 18560521
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||| |||||||||||||||||||| || |||| ||||| ||| |||||||    || |||||||| || |||||||||||     |||||||||||||    
T  18560633 ttagagatgagttgactaaaaagtatggactaatctcatggatgaaaaatttcactgg-atcaaaagtctaaggaatattttaaggagactaaaatcaaa 18560535  T
Q  243 tgttgatatattta 256  Q
    ||||||||||||||    
T  18560534 tgttgatatattta 18560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 20972385 - 20972478
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 281  Q
    |||||||| | |||| ||||| ||| || ||||||||    |||||||||||||||||||||||||||||||||| | || | |||||||||||    
T  20972385 aaaattttagcgggaccaaaaacctaagaaatattttttggggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaaccc 20972478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 7328441 - 7328332
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcct-caggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaat 271  Q
    ||||||||| |||| |||||||| ||||||  |||| ||| ||  |||||||| || ||||| |||||||||| || |||||||| ||| |||||||| |    
T  7328441 taatttcataaatgaaaaattttagagggactaaaaacctacaaaaatattttggagggactgaaatcaaatgatggtatatttatagg-atcgtttact 7328343  T
Q  272 tatttaaccct 282  Q
    |||||||||||    
T  7328342 tatttaaccct 7328332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 16192593 - 16192670
Alignment:
Q  205 aaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    |||||||| ||||||||||| |   ||||||||||||||||||||||||||||  |||   |||| ||||||||||||    
T  16192593 aaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaaccct 16192670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 8185359 - 8185251
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||  ||||||||||||||||  ||  || |||||| ||| ||||||||| | ||| ||||||||| |  |||||||| |  ||||||||||||||    
T  8185359 ttagacacaagttgactaaaaagtagggaccaacttcatggatggaaaattttgaatggaccaaaagcctaaataatattttagggggactaaaatcaaa 8185260  T
Q  243 tgttgatat 251  Q
    |||| ||||    
T  8185259 tgtttatat 8185251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 37897683 - 37897600
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||||||| ||| ||| |||| |||||| | ||| ||| ||||||||||| || ||| ||||||||||||||| | ||||||    
T  37897683 taatttcatggatgaaaatttttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttggtctattta 37897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 40152806 - 40152719
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagg 260  Q
    |||||||||  ||| |||||||||||||||  ||||  || ||||||||||| |  |||||||||| |||||||  ||||||||||||    
T  40152806 taatttcatagatgaaaaattttggagggacaaaaaatctaaggaatattttaggaggactaaaataaaatgtttgtatatttaaagg 40152719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 12874828 - 12874910
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattt 255  Q
    ||||||||| |||| ||| |||| |||||| ||||| ||| |  |||||||| || ||||||||||||||| ||| |||||||    
T  12874828 taatttcataaatgaaaacttttagagggaccaaaaacctaaataatattttagagggactaaaatcaaatattggtatattt 12874910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 30714274 - 30714141
Alignment:
Q  128 taaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcga 227  Q
    |||||||| | | |||||||||||||||||||||||| ||  || |||||||||  ||  ||||||||| ||| |  ||||| || |  ||||||||       
T  30714274 taaaatatatgatgattagacatgagttgactaaaaattaaggactaatttcatagatagaaaattttg-aggaacaaaaaggctaaaaaatattttaag 30714176  T
Q  228 tggactaaaatcaaatgttgatatatttaaaggga 262  Q
      |||||||||||||||||||||||||||| ||||    
T  30714175 aagactaaaatcaaatgttgatatatttaagggga 30714141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 27847999 - 27848064
Alignment:
Q  192 ttttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaa 257  Q
    ||||||||||| ||||||| | || ||||||||  |  |||||||||||||||||| |||||||||    
T  27847999 ttttggagggaccaaaagcttaagtaatattttaaagagactaaaatcaaatgttggtatatttaa 27848064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 39786367 - 39786315
Alignment:
Q  230 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    |||||||||||||||||| |||||||||  ||||  |||| ||||||||||||    
T  39786367 gactaaaatcaaatgttggtatatttaataggattatttacttatttaaccct 39786315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 1745 - 1636
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    |||||||||||||||||||||| |||||| |||||||||||||| ||| ||||| ||||| ||||||||| |  |||||||| || |||||||||| |||    
T  1745 ttagacatgagttgactaaaaaatatagactaatttcatgaatgaaaatttttgaagggaccaaaagcctaattaatattttagagggactaaaat-aaa 1647  T
Q  243 tgttgatatat 253  Q
    | |||||||||    
T  1646 ttttgatatat 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 38900360 - 38900220
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||  |||||| || | ||||||| | |  |||||||| |   ||||||||| |||    
T  38900360 ttagacatgagttgactaaaaagtagagattaatttcatgaatgaaattttttggtggaaccaaaagcataaaaaatattttag-gagactaaaataaaa 38900262  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    | ||| |||||||| |||||   |||| ||||||||||||||    
T  38900261 tattggtatatttagagggaaaatttacttatttaacccttt 38900220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 284
Target Start/End: Complemental strand, 38298838 - 38298691
Alignment:
Q  137 taaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaa 236  Q
    ||||| ||||||||||||||| |||||||||  ||||| ||||||  ||| |   |||| ||| ||  |||| ||| | ||||||||| || ||||| ||    
T  38298838 taaaggttagacatgagttgaataaaaagtagggattattttcatagatgaatttttttagagagacaaaaaacctaaagaatattttagagggacttaa 38298739  T
Q  237 atcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    ||||||| |||||||||||| |  |||| |||| ||||||||||||||    
T  38298738 atcaaatattgatatatttagactgatcatttacttatttaacccttt 38298691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 8086659 - 8086792
Alignment:
Q  147 acatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgtt 246  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||| |||| |||||| |||||  || |  |||||||| |  ||| ||||||||||| ||    
T  8086659 acatgagctgactaaaaagtatggattaatttcatggatgaaaactttttgagggaccaaaaatctaaaaaatattttagggggattaaaatcaaatatt 8086758  T
Q  247 gatatatttaaagggatcgtttaattatttaacc 280  Q
      ||||| || || ||| ||||| ||||||||||    
T  8086759 tgtatatatatagagatggtttacttatttaacc 8086792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 25906106 - 25906214
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaatt 272  Q
    ||||||||| |||| ||||||| | ||||| ||||||||| | ||||||||  |  ||||||||||||||||||||||||||||   ||||  |||| ||    
T  25906106 taatttcataaatgaaaaatttag-agggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttactt 25906204  T
Q  273 atttaaccct 282  Q
    ||||||||||    
T  25906205 atttaaccct 25906214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 6843193 - 6843081
Alignment:
Q  170 gattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgttta 269  Q
    ||||||||||||  ||| |||||||| |||||| |||||  || ||||||||| | |  ||||||||||||||||||  ||||||||||| ||   ||||    
T  6843193 gattaatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatatttaaagagactattta 6843094  T
Q  270 attatttaaccct 282  Q
     ||||||||||||    
T  6843093 tttatttaaccct 6843081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 25906051 - 25905959
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    |||||||| |||||| |||||||||  | |||| ||| |  ||||||||||||||||||| ||||| ||| |||||| |||| ||||||||||    
T  25906051 aaaattttagagggaccaaaagcctatgaaatactttagggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 29673428 - 29673289
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||| ||||||| |||||||||  || |||||| |||  || ||  |||| |||||| ||||| ||| |  |||||||| |  ||||||||||||||    
T  29673428 ttagacacgagttgattaaaaagtagggactaattttatggttgaaattttttagagggaacaaaatcctaaa-aatattttaggaggactaaaatcaaa 29673330  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaaccctt 283  Q
    ||||| ||||||||| |||| | |||| |||||||||||||    
T  29673329 tgttggtatatttaaggggaccatttacttatttaaccctt 29673289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 22297826 - 22297764
Alignment:
Q  217 aatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaac 279  Q
    |||||||| || |||||||||||||||||||||||||||| |||||   |||| |||||||||    
T  22297826 aatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 2858475 - 2858411
Alignment:
Q  215 ggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 280  Q
    |||| |||||||| ||||||||||||||||||||||||||||  |||| | |||| ||||||||||    
T  2858475 ggaaaattttcga-ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 2846625 - 2846573
Alignment:
Q  229 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 281  Q
    ||||||||||||||||||||||||||||  |||| | |||| |||||||||||    
T  2846625 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 15773702 - 15773798
Alignment:
Q  160 aaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||| ||| ||||||||||||| ||| ||  ||||||||||| ||||||||| ||| ||||||| |   |||||||||||| ||||  ||||||||    
T  15773702 aaaaattatggattaatttcatggatgaaattttttggagggaccaaaagcctaagggatattttaggaagactaaaatcaattgttagtatattta 15773798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 3936106 - 3936051
Alignment:
Q  139 aagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattt 194  Q
    |||||||||||||||||||||||||| ||| || |||||| ||| ||| |||||||    
T  3936106 aagattagacatgagttgactaaaaaatatggactaattttatggatggaaaattt 3936051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 20510443 - 20510526
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    |||||||||||||| ||   ||| |||||||||||||||| |  ||||||||    |||||||||||||||||| |||||||||    
T  20510443 taatttcatgaatgaaattgtttagagggatcaaaagcctaaaaaatattttaatgggactaaaatcaaatgtttatatattta 20510526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 13657614 - 13657552
Alignment:
Q  216 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 278  Q
    ||||||||| || | ||||||||||||||||  |||||||||||||| | |||| ||||||||    
T  13657614 gaatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaa 13657552  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 2858514 - 2858461
Alignment:
Q  147 acatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagg 200  Q
    |||||||||||| ||||||||| || |||||||||| ||| |||||||| ||||    
T  2858514 acatgagttgacaaaaaagtatggactaatttcatggatggaaaattttcgagg 2858461  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 5160786 - 5160733
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttg 196  Q
    |||||||||||||||||||||||||| || ||| ||||| |||| |||| ||||    
T  5160786 ttagacatgagttgactaaaaagtatggactaacttcataaatgaaaaactttg 5160733  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 12272635 - 12272527
Alignment:
Q  147 acatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgtt 246  Q
    |||| |||||||||||||||| | | |||||||||| ||| ||| ||||  | ||||||||| ||| |  | |||||| ||  |||||||||||||||||    
T  12272635 acataagttgactaaaaagtagaaactaatttcatggatg-aaatttttttaaggatcaaaaacctaaaaattattttagagagactaaaatcaaatgtt 12272537  T
Q  247 gatatattta 256  Q
    | ||||||||    
T  12272536 ggtatattta 12272527  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 17048064 - 17048113
Alignment:
Q  235 aaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    ||||||||||||| ||||||||| |||||| || | ||||||||||||||    
T  17048064 aaatcaaatgttggtatatttaaggggatcattcacttatttaacccttt 17048113  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 33626007 - 33626059
Alignment:
Q  232 ctaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    |||||||||||| ||||||||||||   ||||| |||| ||||||||||||||    
T  33626007 ctaaaatcaaatattgatatatttaggaggatcatttacttatttaacccttt 33626059  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 7359541 - 7359650
Alignment:
Q  146 gacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgt 245  Q
    |||||||||||| |||||| ||  ||||||||||||  ||| |||||||||| |||||||||||||| |  |||||||| |  ||| |||||||||||||    
T  7359541 gacatgagttgattaaaaattagggattaatttcatagatggaaaattttgg-gggatcaaaagcctaaataatattttagggggagtaaaatcaaatgt 7359639  T
Q  246 tgatatattta 256  Q
    || ||||||||    
T  7359640 tggtatattta 7359650  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 13340536 - 13340440
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
    ||||||||||||||| ||||||||| | |||| ||||  | ||||||||||||||||||| ||||||||| ||||   |||| ||||||||| ||||    
T  13340536 aaaattttggagggaccaaaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaactcttt 13340440  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 31298815 - 31298723
Alignment:
Q  190 aattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    |||||| |||||| ||||||||| || |||||||| || ||| |||||| |||||||| ||| ||||||| |||| |||| ||||||||||||    
T  31298815 aattttagagggaccaaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatcatttacttatttaaccct 31298723  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 34637572 - 34637655
Alignment:
Q  173 taatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||| | |||| |||||||| |||||| ||||| ||||| ||||||||| |  | ||||||||||||||||||||||||||    
T  34637572 taatttcttaaatgaaaaattttagagggaccaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatattta 34637655  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 31298887 - 31298981
Alignment:
Q  188 aaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    |||| ||| |||||| ||||||||| | ||||||||| || | ||||||||||||| ||| ||||||||||||||   |||| ||||||||||||    
T  31298887 aaaaatttagagggagcaaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaaccct 31298981  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 12290091 - 12290005
Alignment:
Q  170 gattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 256  Q
    ||||||||||||| ||| ||| ||||| ||||||||||| |||  |||||||||| |   | |||||||||||||||| ||||||||    
T  12290091 gattaatttcatggatgaaaatttttgaagggatcaaaaacctagggaatattttaggcaggctaaaatcaaatgttggtatattta 12290005  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 14365120 - 14365157
Alignment:
Q  217 aatattttcgatggactaaaatcaaatgttgatatatt 254  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14365120 aatattttagatggactaaaatcaaatgttgatatatt 14365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 6190706 - 6190568
Alignment:
Q  143 ttagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttcgatggactaaaatcaaa 242  Q
    ||||||||||||||| |||||||||  ||||||||||||| ||  ||  ||||| |  || ||||| ||| || |||||||  |  | ||||||||||||    
T  6190706 ttagacatgagttgattaaaaagtagtgattaatttcatggataaaattttttgaaaagaccaaaaacctaagaaatatttaaggag-actaaaatcaaa 6190608  T
Q  243 tgttgatatatttaaagggatcgtttaattatttaaccct 282  Q
    ||||||||||||||  | |||| |||| ||| ||||||||    
T  6190607 tgttgatatatttagggagatcatttacttagttaaccct 6190568  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 284
Target Start/End: Complemental strand, 30465 - 30308
Alignment:
Q  126 attaaaatatttaaagattagacatgagttgactaaaaagtatagattaatttcatgaatgtaaaattttggagggatcaaaagcctcaggaatattttc 225  Q
    ||||||| || | ||| |||||||||||||||||||||||||| || |||||||||  ||| ||  |||| || ||| ||||||| | || ||||||||     
T  30465 attaaaaaatatgaaggttagacatgagttgactaaaaagtattgactaatttcattgatgaaattttttaga-ggaccaaaagcttaagtaatattttt 30367  T
Q  226 gatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 284  Q
        |||||||||||||||||  ||||||||  |||| | || | ||||||||||||||    
T  30366 aggagactaaaatcaaatgttagtatatttatggggaccattcacttatttaacccttt 30308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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