View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_32 (Length: 409)
Name: NF4445_low_32
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 5586077 - 5586329
Alignment:
| Q |
17 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586077 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
5586176 |
T |
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| Q |
117 |
ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586177 |
ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
5586276 |
T |
|
| Q |
217 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586277 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat |
5586329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 5592346 - 5592705
Alignment:
| Q |
17 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5592346 |
agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
5592445 |
T |
|
| Q |
117 |
ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
5592446 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacatatacc |
5592545 |
T |
|
| Q |
217 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctg |
316 |
Q |
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|||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5592546 |
aaatgcttctgttataaaccatgatattcata------------------aatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctg |
5592627 |
T |
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| Q |
317 |
taaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattg |
394 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || ||||| | |||||||||| |
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| T |
5592628 |
taaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattg |
5592705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 5586352 - 5586479
Alignment:
| Q |
267 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586352 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
5586451 |
T |
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| Q |
367 |
tataaatgtggcttgttggatataattg |
394 |
Q |
| |
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|||||||||| ||||||||||||||||| |
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| T |
5586452 |
tataaatgtgtcttgttggatataattg |
5586479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 5575607 - 5575793
Alignment:
| Q |
21 |
gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtcccat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| | |||||| ||| ||||| || ||||| | ||| |||| |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat |
5575706 |
T |
|
| Q |
121 |
gagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgtt |
207 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
5575707 |
gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgtt |
5575793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 5572884 - 5572968
Alignment:
| Q |
310 |
atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattg |
394 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| || ||||| |
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| T |
5572884 |
ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattg |
5572968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 5575896 - 5576000
Alignment:
| Q |
291 |
aaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatata |
390 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||| || |||||||| || | |
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| T |
5575896 |
aaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtaga |
5575995 |
T |
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| Q |
391 |
attga |
395 |
Q |
| |
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||||| |
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| T |
5575996 |
attga |
5576000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
| Q |
17 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
62 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5572667 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5572712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
| Q |
17 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
62 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5580486 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5580531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
167 |
taacacatattttcttgctccaatttcatgtaaagcctg |
205 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |
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| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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