View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_36 (Length: 399)
Name: NF4445_low_36
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_36 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 37562703 - 37562304
Alignment:
| Q |
1 |
aaattagccacaacactgtgtgaatttgtatgctaacctgtgtgaatttttatatgttccttctattattcaaggcccaactctaccgtcagccagaggt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
37562703 |
aaattagtcacaacactctgtgaatttgtatgctaacctgtgtgaatttttatatgttccttctattattcaagacccaactcttccgtcagccagaggt |
37562604 |
T |
|
| Q |
101 |
tgagaatatattttgctcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37562603 |
tgagaatatattttgctcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattga |
37562504 |
T |
|
| Q |
201 |
ttgttaaaattttgaatctgattggtaaaaactatagttctcatggtgttcctggtgg--------tggggatgaaggagagagatgctagtggaagata |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
37562503 |
ttgttaaaattttgaatctgattggtaaaaactatagttctcatggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagata |
37562404 |
T |
|
| Q |
293 |
gtgacaaaaatatagtgttgagagtgtatgataaaattgtagatttaatggttaaaattgattttcccatggtggaaaataattctcctttcctatgcta |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||| |
|
|
| T |
37562403 |
gtgacaaaaatatagtgttgagagtgtatgataagattgtagatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgcta |
37562304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 13934962 - 13935092
Alignment:
| Q |
262 |
ggatgaaggagagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtatgataaaattgtagatttaatggttaaaattgattttccca |
361 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||| ||||| | |
|
|
| T |
13934962 |
ggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaagtgactttccta |
13935061 |
T |
|
| Q |
362 |
tggtggaaaataattctcctttcctatgcta |
392 |
Q |
| |
|
|||||||||| || | |||||||| |||||| |
|
|
| T |
13935062 |
tggtggaaaacaactttcctttcccatgcta |
13935092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 1487690 - 1487662
Alignment:
| Q |
298 |
aaaaatatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1487690 |
aaaaatatagtgttgagagtgtatgataa |
1487662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 37562969 - 37563017
Alignment:
| Q |
262 |
ggatgaaggagagagatgctagtggaagatagtgacaaaaatatagtgt |
310 |
Q |
| |
|
||||||| || ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
37562969 |
ggatgaatgaaagagatggtatcggaagatagtgacaaaaatatagtgt |
37563017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 51421315 - 51421706
Alignment:
| Q |
1 |
aaattagccacaacactgtgtgaatttgtatgctaacctgtgtgaatttttatatgttccttctattattcaaggcccaactctaccgtcagccagaggt |
100 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
51421315 |
aaattagtcacaatagtgtgtgaatttgtatgctaacttgtgtaaatttttatatgttccttctattattcaagacccaactgttccgtcagccagaggt |
51421414 |
T |
|
| Q |
101 |
tgagaatatattttgctcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51421415 |
tgagaatatattttcctcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattga |
51421514 |
T |
|
| Q |
201 |
ttgttaaaattttgaatctgattggtaaaaactatagttctcatggtgttcctgg--------tggtggggatgaaggagagagatgctagtggaagata |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51421515 |
ttgttaaaattttgaatctgattggtaaaaactatagttctcatggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagata |
51421614 |
T |
|
| Q |
293 |
gtgacaaaaatatagtgttgagagtgtatgataaaattgtagatttaatggttaaaattgattttcccatggtggaaaataattctcctttc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| ||||| |||||| |
|
|
| T |
51421615 |
gtgacaaaaatatagtgttgagagtgtatgataagattgtagatttaatggttcaaattgactttcccatggtgggaaacaattcccctttc |
51421706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 51421000 - 51420891
Alignment:
| Q |
262 |
ggatgaaggagagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtatgataaaattgtagatttaatggttaaaattgattttccca |
361 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||| ||||| | |
|
|
| T |
51421000 |
ggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaaatgactttccta |
51420901 |
T |
|
| Q |
362 |
tggtggaaaa |
371 |
Q |
| |
|
|||||||||| |
|
|
| T |
51420900 |
tggtggaaaa |
51420891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 49287844 - 49287772
Alignment:
| Q |
256 |
tggtggggatgaaggagagagatgctagtggaagatagtgaca--aaaatatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
|||| |||||||||||||| |||| | |||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
49287844 |
tggtagggatgaaggagagtgatggttgtggaagatagtgacaaaaaaatttggtgttgagagtgtatgataa |
49287772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 38931706 - 38931331
Alignment:
| Q |
17 |
tgtgtgaatttgtatgctaacctgtgtgaatttttatatgttccttctattattcaaggcccaactctaccgtcagccagaggttgagaatatattttgc |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
38931706 |
tgtgtgaatttgtatgctaacttgtgtaaatttttatatgttccttctattattcaagacccaactgttccgtcagccagaggttgagaatatattttcc |
38931607 |
T |
|
| Q |
117 |
tcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattaattgttaaaattttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38931606 |
tcaaatcaaacaatttgttcctatatagtgtcctgcaaggattgattactttgaattgcaaaaagtaagttcatggaatattgattgttaaaattttgaa |
38931507 |
T |
|
| Q |
217 |
tctgattggtaaaaactatagttctcatggtgttcctggtgg--------tggggatgaaggagagagatgctagtggaagatagtgacaaaaatatagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38931506 |
tctgattggtaaaaactatagttctcatggtgttgctggtggtgggttggtggggatgaaggagagagatggtagtggaagatagtgacaaaaatatagt |
38931407 |
T |
|
| Q |
309 |
gttgagagtgtatgataaaattgtagatttaatggttaaaattgattttcccatggtggaaaataattctcctttc |
384 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| ||| ||||| |||||| |
|
|
| T |
38931406 |
gttgagagtgtatgataagattgtagatctaatggttcaaattgactttcccatggtgggaaacaattcccctttc |
38931331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 262 - 371
Target Start/End: Original strand, 38932037 - 38932146
Alignment:
| Q |
262 |
ggatgaaggagagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtatgataaaattgtagatttaatggttaaaattgattttccca |
361 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||| ||||| | |
|
|
| T |
38932037 |
ggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaaatgactttccta |
38932136 |
T |
|
| Q |
362 |
tggtggaaaa |
371 |
Q |
| |
|
|||||||||| |
|
|
| T |
38932137 |
tggtggaaaa |
38932146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 52747070 - 52747018
Alignment:
| Q |
88 |
gtcagccagaggttgagaatatattttgctcaaatcaaacaatttgttcctat |
140 |
Q |
| |
|
||||| |||||||||| ||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
52747070 |
gtcagtcagaggttgaaaatatcttttcctcaaatcaaacaaattgttcctat |
52747018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 4386099 - 4386171
Alignment:
| Q |
256 |
tggtggggatgaaggagagagatgctagtggaagatagtgacaaaaa--tatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4386099 |
tggtggggatgaaggagagtgatggttgtggaagatagtgacaaaaaattctagtgttgagagtgtatgataa |
4386171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 36391654 - 36391704
Alignment:
| Q |
335 |
atttaatggttaaaattgattttcccatggtggaaaataattctcctttcc |
385 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || || ||||||| |
|
|
| T |
36391654 |
atttaatggttaaaatttactttcccatggtggaaaacaactcccctttcc |
36391704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 32944403 - 32944452
Alignment:
| Q |
272 |
gagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtat |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
32944403 |
gagagatggtagtggaagatagtgacaataatctagtgttgagggtgtat |
32944452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 33370794 - 33370843
Alignment:
| Q |
272 |
gagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtat |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
33370794 |
gagagatggtagtggaagatagtgacaataatctagtgttgagggtgtat |
33370843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 43079311 - 43079245
Alignment:
| Q |
259 |
tggggatgaaggagagagatgctagtggaagatagtgacaaaaatatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||| || |||| |||||||||||||||| ||||||| |
|
|
| T |
43079311 |
tggggatgagggagagagatgatgatggaagatagcgataaaa-tatagtgttgagagtgcatgataa |
43079245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 35771152 - 35771222
Alignment:
| Q |
256 |
tggtggggatgaaggagagagatgctagtggaagatagtgacaaaaa--tatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
||||||||||||||||||| |||| | ||||| ||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
35771152 |
tggtggggatgaaggagagtgatggttgtgga--atagtgacaaaaaattatggtgttgagagtgtataataa |
35771222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 35770419 - 35770359
Alignment:
| Q |
268 |
aggagagagatgctagtggaagatagtgacaaaaa--tatagtgttgagagtgtatgataa |
326 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
35770419 |
aggagagtgatggttgtggaagatagtgacaaaaaattctggtgttgagagtgtatgataa |
35770359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 32548590 - 32548641
Alignment:
| Q |
272 |
gagagatgctagtggaagatagtgacaaa--aatatagtgttgagagtgtat |
321 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
32548590 |
gagagatggtagtggaagatagtgacaaaataatataatgttgagggtgtat |
32548641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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