View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_38 (Length: 386)

Name: NF4445_low_38
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_38
NF4445_low_38
[»] chr6 (26 HSPs)
chr6 (17-232)||(29469024-29469239)
chr6 (74-232)||(28479527-28479685)
chr6 (74-232)||(29791982-29792140)
chr6 (14-208)||(28490642-28490836)
chr6 (236-370)||(29469275-29469409)
chr6 (14-208)||(29803052-29803246)
chr6 (30-223)||(29695553-29695746)
chr6 (78-206)||(29674184-29674312)
chr6 (79-186)||(27676728-27676835)
chr6 (174-232)||(29728030-29728088)
chr6 (174-232)||(29759526-29759584)
chr6 (79-186)||(27697694-27697801)
chr6 (80-183)||(28901570-28901673)
chr6 (79-189)||(26885037-26885147)
chr6 (174-232)||(29724440-29724498)
chr6 (82-189)||(26862550-26862657)
chr6 (79-186)||(27592129-27592236)
chr6 (79-189)||(25511859-25511969)
chr6 (79-189)||(26056889-26056999)
chr6 (79-189)||(26076859-26076969)
chr6 (80-186)||(27337203-27337309)
chr6 (80-186)||(27397943-27398049)
chr6 (79-189)||(27530406-27530516)
chr6 (151-196)||(26636685-26636730)
chr6 (151-196)||(26742651-26742696)
chr6 (151-196)||(26950782-26950827)
[»] chr3 (1 HSPs)
chr3 (30-206)||(614618-614794)
[»] chr8 (2 HSPs)
chr8 (14-208)||(12589574-12589768)
chr8 (83-232)||(16441027-16441176)
[»] chr1 (1 HSPs)
chr1 (78-205)||(5922558-5922685)
[»] scaffold0012 (2 HSPs)
scaffold0012 (174-232)||(212204-212262)
scaffold0012 (174-232)||(238945-239003)
[»] scaffold0007 (3 HSPs)
scaffold0007 (78-183)||(67276-67381)
scaffold0007 (78-127)||(31929-31978)
scaffold0007 (78-127)||(36678-36727)
[»] scaffold0573 (1 HSPs)
scaffold0573 (80-183)||(8121-8224)
[»] chr4 (1 HSPs)
chr4 (147-222)||(5090022-5090097)
[»] chr5 (1 HSPs)
chr5 (149-196)||(16691904-16691951)
[»] chr2 (1 HSPs)
chr2 (151-217)||(17992292-17992358)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 29469024 - 29469239
Alignment:
Q  17 aagaacattgaattaacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgacaagg 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29469024 aagaacattgagttaacaagtgttagacaaggaatttcaatattacaaaaaaggttccaccaaaagaaggttcttttgcttctagacgatgttgacaagg 29469123  T
Q  117 aggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaacatatcatgg 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29469124 aggagcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaacatatcatgg 29469223  T
Q  217 ggttgaacgtacatat 232  Q
    ||||||||||||||||    
T  29469224 ggttgaacgtacatat 29469239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 28479685 - 28479527
Alignment:
Q  74 caccaaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagag 173  Q
    |||||||||||||||||||| ||||| || |||||||||||||| || |||||| |||||||||||||||| || |||||||||||||  || |||||||    
T  28479685 caccaaaagaaggttcttttacttctggatgatgttgacaaggatgagcaattaaaggctattgctggaagttccgattggtttggtctaggaagtagag 28479586  T
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  28479585 tcatcatcacgactcgggacaaaaggttgctaacatatcatgggattgaaagaacatat 28479527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 29792140 - 29791982
Alignment:
Q  74 caccaaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagag 173  Q
    |||||||||||||||||||| ||||| || |||||||||||||| || |||||| |||||||||||||||| || |||||||||||||  || |||||||    
T  29792140 caccaaaagaaggttcttttacttctggatgatgttgacaaggatgagcaattaaaggctattgctggaagttccgattggtttggtctaggaagtagag 29792041  T
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  29792040 tcatcatcacgactcgggacaaaaggttgctaacatatcatgggattgaaagaacatat 29791982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 28490836 - 28490642
Alignment:
Q  14 gagaagaacattgaattaacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgaca 113  Q
    |||||||||||||| |||||||||||| ||||||||||||| || ||        || |||||||||||||| |||||||||||||||| ||||||||||    
T  28490836 gagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaaaggctccaccaaaagaagattcttttgcttctagatgatgttgaca 28490737  T
Q  114 aggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaaca 208  Q
    |   ||| ||||||||||| |||||||||||||| | |||||||||||  || |||||||||||||| || ||||||||||||||||||||||||    
T  28490736 atttggagcaattagaggccattgctggaagatccgtttggtttggtccaggaagtagagtcatcattacgactcgggacaaaaggttgctaaca 28490642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 29469275 - 29469409
Alignment:
Q  236 gctagttatcttgaaagcttttaaaaagaaatttagtccaagctataagactgctttatttgaacagtatgctagtcgattggatgtgaacgaactgcct 335  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||| || |||||    
T  29469275 gctagttatcttgaaagcttttaaaaataaatttagtccaagctataaggatgctttatttgcacagtatggtagtctattggatgtgaacaaattgcct 29469374  T
Q  336 aaactgaaagcttttaagactggcgaagttttttc 370  Q
    | |||||||||||||||||||| ||||||||||||    
T  29469375 agactgaaagcttttaagactgacgaagttttttc 29469409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 29803246 - 29803052
Alignment:
Q  14 gagaagaacattgaattaacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgaca 113  Q
    |||||||||||||| |||||||||||| ||||||||||||| || ||        || |||||||||||||| |||||||||||||||| ||||||||||    
T  29803246 gagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaaaggctccaccaaaagaagattcttttgcttctagatgatgttgaca 29803147  T
Q  114 aggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaaca 208  Q
    |   ||| ||||||||||| |||||||||||||| | |||||||||||  || |||||||||||||| || ||||||||||||||||||||||||    
T  29803146 atttggagcaattagaggccattgctggaagatccgtttggtttggtccaggaagtagagtcatcattacgactcgggacaaaaggttgctaaca 29803052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 29695746 - 29695553
Alignment:
Q  30 taacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattaga 129  Q
    |||| ||||||||||||||| ||||||||||        || | |||||||||||||||||||| ||||| || |||||||||||||| || |||||| |    
T  29695746 taaccagtgttagacaaggagtttcaatattacaacaaaggcttcaccaaaagaaggttcttttacttctggatgatgttgacaaggatgagcaattaaa 29695647  T
Q  130 ggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaa 223  Q
    ||||||||||||||| || || ||||||||||  || ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  29695646 ggctattgctggaagttccgaatggtttggtctaggaagtagagtcatcatcacgactcgggacaaaagattgctaacatatcatgggattgaa 29695553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 29674312 - 29674184
Alignment:
Q  78 aaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcat 177  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||| ||||| ||  |||||||| ||   ||||||||||| ||    
T  29674312 aaaagaaggttcttttgcttttagacgatgttgacaagaaggagcaattaaaggctattgcaggaagttccaattggtttcgtaaaggcagtagagtaat 29674213  T
Q  178 catcaccactcgggacaaaaggttgctaa 206  Q
     ||||| |||||| ||||||  |||||||    
T  29674212 aatcacaactcggtacaaaaatttgctaa 29674184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 27676835 - 27676728
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| || |||||||||||   ||||||  |||||||| | |||||||||   ||||||||||||| ||| || |||||||||    
T  27676835 aaagaagattcttttgattcttgatgatgttgacaaactggatcagctagaggctttggctggaagactcgattggtttggtcctggaagcagagtcatc 27676736  T
Q  179 atcaccac 186  Q
    ||||||||    
T  27676735 atcaccac 27676728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 29728088 - 29728030
Alignment:
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||| ||||    
T  29728088 tcatcatcacaactcgggacaaaaggttgctaacatgtcatgggattgaatgtaaatat 29728030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 29759584 - 29759526
Alignment:
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    |||||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||    
T  29759584 tcatcatcacaactcgggataaaaagttgctaacatgtcatggggttgaacatacatat 29759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 27697801 - 27697694
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| ||||||||||||||   ||||||  || ||||| | |||||| ||   ||||||||||||| ||| || |||||||||    
T  27697801 aaagaagattcttttgattctcgacgatgttgacaaactggatcagctacaggctttggctggaggactcgattggtttggtcctggaagcagagtcatc 27697702  T
Q  179 atcaccac 186  Q
    ||||||||    
T  27697701 atcaccac 27697694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 28901570 - 28901673
Alignment:
Q  80 aagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatca 179  Q
    |||||||||||||||||||| ||| |||||||||||  ||||||||||   ||||||| ||||  | | || |||||||||  ||| |||||||| ||||    
T  28901570 aagaaggttcttttgcttcttgacaatgttgacaagttggatcaattacgcgctattgttggagaacccgaatggtttggtaatggaagtagagttatca 28901669  T
Q  180 tcac 183  Q
    ||||    
T  28901670 tcac 28901673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 26885037 - 26885147
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| || |||||||||||   ||| ||  |||||||| | |||||| ||  |||||||||||||||||| || || ||||||    
T  26885037 aaagaagattcttttgattcttgatgatgttgacaaaatggagcagctagaggctttggctggaggacttgattggtttggtcgtggaagcagggtcatc 26885136  T
Q  179 atcaccactcg 189  Q
    || ||||||||    
T  26885137 attaccactcg 26885147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 29724498 - 29724440
Alignment:
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    ||||| |||| | |||||||||||| |||||||||| |||||||||||||| |||||||    
T  29724498 tcatcgtcacaattcgggacaaaagcttgctaacatgtcatggggttgaacttacatat 29724440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 26862550 - 26862657
Alignment:
Q  82 gaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatc 181  Q
    |||| |||||||| |||| || |||||||||||   ||| ||  |||||||  | |||||| ||  |||||||||||||| ||| ||||||||||||||     
T  26862550 gaagattcttttgattctcgatgatgttgacaaactggaacagctagaggcattagctggaggacttgattggtttggtcatggaagtagagtcatcatt 26862649  T
Q  182 accactcg 189  Q
    ||||||||    
T  26862650 accactcg 26862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 27592236 - 27592129
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| || |||||||||||   ||||||  |||| ||| | |||||| ||  ||||||||| |||| ||| || |||||||||    
T  27592236 aaagaagattcttttgattcttgatgatgttgacaaactggatcagctagatgctttggctggaggacttgattggttcggtcctggaagcagagtcatc 27592137  T
Q  179 atcaccac 186  Q
    ||||||||    
T  27592136 atcaccac 27592129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 25511859 - 25511969
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| ||||||||||||||   ||| ||  |||||||| | |||||| ||  ||| ||||| |||| ||| || |||||||||    
T  25511859 aaagaagattcttttgattcttgacgatgttgacaaactggagcagctagaggctttggctggaggacttgactggttcggtcctggaagcagagtcatc 25511958  T
Q  179 atcaccactcg 189  Q
    || ||||||||    
T  25511959 attaccactcg 25511969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 26056889 - 26056999
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| ||||||||||||||   ||| ||  |||| ||| | |||||| ||  ||||||||| |||| ||| || |||||||||    
T  26056889 aaagaagattcttttgattcttgacgatgttgacaaactggagcagctagacgctttggctggaggacttgattggttcggtcttggaagcagagtcatc 26056988  T
Q  179 atcaccactcg 189  Q
    || ||||||||    
T  26056989 attaccactcg 26056999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 26076859 - 26076969
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| ||||||||||||||   ||| ||  |||| ||| | |||||| ||  ||||||||| |||| ||| || |||||||||    
T  26076859 aaagaagattcttttgattcttgacgatgttgacaaactggagcagctagacgctttggctggaggacttgattggttcggtcttggaagcagagtcatc 26076958  T
Q  179 atcaccactcg 189  Q
    || ||||||||    
T  26076959 attaccactcg 26076969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 27337309 - 27337203
Alignment:
Q  80 aagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatca 179  Q
    |||||| |||||||| |||| || ||||||||| |   ||||||  |||||||| | |||||| ||  ||||||||| |||| ||| || ||||||||||    
T  27337309 aagaagattcttttgattctcgatgatgttgaccaactggatcagctagaggctttggctggaggacttgattggttcggtcctggaagcagagtcatca 27337210  T
Q  180 tcaccac 186  Q
    |||||||    
T  27337209 tcaccac 27337203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 27398049 - 27397943
Alignment:
Q  80 aagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatca 179  Q
    |||||| |||||||| |||| || ||||||||| |   ||||||  |||||||| | |||||| ||  ||||||||| |||| ||| || ||||||||||    
T  27398049 aagaagattcttttgattctcgatgatgttgaccaactggatcagctagaggctttggctggaggacttgattggttcggtcctggaagcagagtcatca 27397950  T
Q  180 tcaccac 186  Q
    |||||||    
T  27397949 tcaccac 27397943  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 27530516 - 27530406
Alignment:
Q  79 aaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatc 178  Q
    ||||||| |||||||| |||| || |||||||||||   ||||||  |||||||  | |||||| ||  ||||||||| |||| ||| ||||||||||||    
T  27530516 aaagaagattcttttgattcttgatgatgttgacaaactggatcagctagaggccttggctggaggacttgattggttcggtcctgggagtagagtcatc 27530417  T
Q  179 atcaccactcg 189  Q
    || || |||||    
T  27530416 attactactcg 27530406  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 26636685 - 26636730
Alignment:
Q  151 ttggtttggtcgtggcagtagagtcatcatcaccactcgggacaaa 196  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||    
T  26636685 ttggcttggtcgtggcagcagagtaatcatcaccactcgagacaaa 26636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 26742651 - 26742696
Alignment:
Q  151 ttggtttggtcgtggcagtagagtcatcatcaccactcgggacaaa 196  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||    
T  26742651 ttggcttggtcgtggcagcagagtaatcatcaccactcgagacaaa 26742696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 26950782 - 26950827
Alignment:
Q  151 ttggtttggtcgtggcagtagagtcatcatcaccactcgggacaaa 196  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  26950782 ttggcttggtcgtggcagcagagtcatcattaccactcgtgacaaa 26950827  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 614618 - 614794
Alignment:
Q  30 taacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattaga 129  Q
    ||||||||||| |||||||||||| ||||||        || | || |||||||||||||||||||||||||||||||||||||| ||||| |||||  |    
T  614618 taacaagtgttggacaaggaattttaatattacaaaaaaggcttcaacaaaagaaggttcttttgcttctagacgatgttgacaaagaggagcaattgaa 614717  T
Q  130 ggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaa 206  Q
    ||||||||||||||| || |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  614718 ggctattgctggaagttccgattggtttggtccaggcagtagagtcatcatcacgactcgggacaaaaggttgctaa 614794  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 12589574 - 12589768
Alignment:
Q  14 gagaagaacattgaattaacaagtgttagacaaggaatttcaatattnnnnnnnnggttccaccaaaagaaggttcttttgcttctagacgatgttgaca 113  Q
    |||||| |||| || |||||||||||| |||||||||| ||||||||        || ||| ||||||||||||||||||||||||||||||||||||||    
T  12589574 gagaaggacatggagttaacaagtgttggacaaggaatgtcaatattacaacaaaggctccgccaaaagaaggttcttttgcttctagacgatgttgaca 12589673  T
Q  114 aggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaaca 208  Q
    |   ||| |||||||||||  ||||||||||||||| ||||||||| |  ||||| ||||||||||| || ||||| ||||||||||| ||||||    
T  12589674 atttggagcaattagaggccgttgctggaagatctgtttggtttggacaaggcagcagagtcatcattacgactcgagacaaaaggttactaaca 12589768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 16441027 - 16441176
Alignment:
Q  83 aaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatcatca 182  Q
    |||||||||||| |||| ||||||||||||||   ||| ||  | |||| |||||  |||||  ||||||||| ||||| ||| || ||||| ||||| |    
T  16441027 aaggttcttttggttcttgacgatgttgacaaaatggagcagattgaggttattgtgggaaggcctgattggtatggtcctggtagcagagttatcatta 16441126  T
Q  183 ccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    | ||||||||||||  ||||||| ||  ||||||||||||| | ||||||    
T  16441127 caactcgggacaaacagttgctagcaagtcatggggttgaaagaacatat 16441176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 5922685 - 5922558
Alignment:
Q  78 aaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcat 177  Q
    ||||||||||||||||||||||||| ||||| ||| || || | ||||| || || ||||||||| ||  |||||||| |||||  ||||||||||||||    
T  5922685 aaaagaaggttcttttgcttctagatgatgtcgacgagcagaaacaattggatgcaattgctggaggaaatgattggtatggtctcggcagtagagtcat 5922586  T
Q  178 catcaccactcgggacaaaaggttgcta 205  Q
    |||||| || ||||||||| ||||||||    
T  5922585 catcacaacccgggacaaagggttgcta 5922558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 212262 - 212204
Alignment:
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    ||||||| || ||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  212262 tcatcattacaactcgggacaaaaagttgctaacatgtcatggggttgaacgcacatat 212204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 239003 - 238945
Alignment:
Q  174 tcatcatcaccactcgggacaaaaggttgctaacatatcatggggttgaacgtacatat 232  Q
    |||||||||| |||||||| ||||||||||| |||| || ||||||||||| |||||||    
T  239003 tcatcatcacaactcgggataaaaggttgcttacatgtcgtggggttgaacatacatat 238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 67276 - 67381
Alignment:
Q  78 aaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcat 177  Q
    ||||||| |||||||||||||| ||| |||||||||||  ||||||||||   ||||||| ||||  | |||  |||||||||||||| |||||||| ||    
T  67276 aaaagaaagttcttttgcttcttgacaatgttgacaagttggatcaattacgcgctattgttggagaacctggatggtttggtcgtggaagtagagttat 67375  T
Q  178 catcac 183  Q
     |||||    
T  67376 gatcac 67381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 31929 - 31978
Alignment:
Q  78 aaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaatta 127  Q
    ||||||| |||||||||||||| ||| |||||||||||  ||||||||||    
T  31929 aaaagaaagttcttttgcttcttgacaatgttgacaagttggatcaatta 31978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 36678 - 36727
Alignment:
Q  78 aaaagaaggttcttttgcttctagacgatgttgacaaggaggatcaatta 127  Q
    ||||||| |||||||||||||| ||| |||||||||||  ||||||||||    
T  36678 aaaagaaagttcttttgcttcttgacaatgttgacaagttggatcaatta 36727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 8224 - 8121
Alignment:
Q  80 aagaaggttcttttgcttctagacgatgttgacaaggaggatcaattagaggctattgctggaagatctgattggtttggtcgtggcagtagagtcatca 179  Q
    |||||||||||||||||||| ||| |||||||||||  ||||||||||   ||||||| ||||  | | || |||||||||  ||| |||||||| ||||    
T  8224 aagaaggttcttttgcttcttgacaatgttgacaagttggatcaattacgcgctattgttggagaacccgaatggtttggtaatggaagtagagttatca 8125  T
Q  180 tcac 183  Q
    ||||    
T  8124 tcac 8121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 5090097 - 5090022
Alignment:
Q  147 ctgattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaacatatcatggggttga 222  Q
    ||||||||||||||| |||||| ||||||||||| |||||||| ||||||   ||||||| || ||||||| ||||    
T  5090097 ctgattggtttggtcttggcagcagagtcatcattaccactcgagacaaacacttgctaaaatgtcatgggattga 5090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 16691904 - 16691951
Alignment:
Q  149 gattggtttggtcgtggcagtagagtcatcatcaccactcgggacaaa 196  Q
    ||||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  16691904 gattggtttggtcctggaagtagagtcatcattaccactcgagacaaa 16691951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 17992358 - 17992292
Alignment:
Q  151 ttggtttggtcgtggcagtagagtcatcatcaccactcgggacaaaaggttgctaacatatcatggg 217  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||   ||| |||||| |||||||    
T  17992358 ttggcttggtcgtggcagcagagtcatcattaccactcgagacaaacatttgttaacatgtcatggg 17992292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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