View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_4 (Length: 798)

Name: NF4445_low_4
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_4
NF4445_low_4
[»] chr3 (5 HSPs)
chr3 (396-748)||(33991088-33991440)
chr3 (9-333)||(33990701-33991025)
chr3 (49-79)||(1116401-1116431)
chr3 (45-82)||(4216083-4216120)
chr3 (27-80)||(35335587-35335640)
[»] chr5 (3 HSPs)
chr5 (419-479)||(18854946-18855006)
chr5 (261-329)||(18855231-18855299)
chr5 (47-83)||(6760514-6760550)
[»] chr4 (5 HSPs)
chr4 (23-65)||(7367535-7367577)
chr4 (261-331)||(42868453-42868523)
chr4 (28-76)||(43843634-43843682)
chr4 (517-555)||(41571464-41571502)
chr4 (422-476)||(42868177-42868231)
[»] chr1 (2 HSPs)
chr1 (23-83)||(3523373-3523433)
chr1 (34-76)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (11-66)||(41775203-41775258)
chr7 (45-83)||(438696-438734)
[»] chr8 (1 HSPs)
chr8 (11-65)||(14227192-14227246)
[»] chr2 (1 HSPs)
chr2 (517-555)||(26004210-26004248)
[»] chr6 (2 HSPs)
chr6 (48-81)||(4323114-4323147)
chr6 (38-75)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 396 - 748
Target Start/End: Original strand, 33991088 - 33991440
Alignment:
Q  396 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 33991187  T
Q  496 atatgatcaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcatatgtcaaagactaaattacaggatttcatacacttt 595  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33991188 atatgataaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcagatgtcaaagactaaattgcaggatttcatacacttt 33991287  T
Q  596 agaaactgaattgacggatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 695  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991288 agaaactgaattgactgatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 33991387  T
Q  696 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggagg 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991388 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggagg 33991440  T

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Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 33990701 - 33991025
Alignment:
Q  9 agcacagacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacaccag 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33990701 agcacatacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacaccag 33990800  T
Q  109 aatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990801 aatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatat 33990900  T
Q  209 aaagacgttgaaatttctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggttg 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990901 aaagacgtagaaatttctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggttg 33991000  T
Q  309 ttgtcccctggctgaggtatataaa 333  Q
    |||||||||||||||||||||||||    
T  33991001 ttgtcccctggctgaggtatataaa 33991025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  49 taataatttgagaaaattgaagtgattaaat 79  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  45 ccaataataatttgagaaaattgaagtgattaaatgta 82  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  27 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 80  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 419 - 479
Target Start/End: Complemental strand, 18855006 - 18854946
Alignment:
Q  419 tttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgt 479  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgcttcactgctgatgttggccaagtatgt 18854946  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  261 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 329  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  47 aataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  23 acacgacactaacacatagacgccaataataatttgagaaaat 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  261 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 331  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  28 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 76  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 555
Target Start/End: Complemental strand, 41571502 - 41571464
Alignment:
Q  517 gtatataaaatccttcaatttagtccctgctattaagat 555  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  41571502 gtatataaaatccgtcaacttagtccctgctattaagat 41571464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 42868231 - 42868177
Alignment:
Q  422 cagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagta 476  Q
    ||||||||| || || ||||||||||| ||||||||||||||| | |||||||||    
T  42868231 cagagagaattacggttgtgatgttgtgtgcttcactgctgatgttggccaagta 42868177  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  23 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  34 acacatagacgccaataataatttgagaaaattgaagtgatta 76  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 41775203 - 41775258
Alignment:
Q  11 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaatt 66  Q
    ||||||||| |||||||||||||| |||| | | || |||||||||||||||||||    
T  41775203 cacagacaccggacacgacactaagacatggccaccgataataatttgagaaaatt 41775258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  45 ccaataataatttgagaaaattgaagtgattaaatgtaa 83  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 14227192 - 14227246
Alignment:
Q  11 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaat 65  Q
    ||||||||||||||||| |||| |||| |  || |||||||||||||||||||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 555
Target Start/End: Original strand, 26004210 - 26004248
Alignment:
Q  517 gtatataaaatccttcaatttagtccctgctattaagat 555  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26004210 gtatataaaatccatcaatttagtccctgatattaagat 26004248  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  48 ataataatttgagaaaattgaagtgattaaatgt 81  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  38 atagacgccaataataatttgagaaaattgaagtgatt 75  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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