View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_41 (Length: 367)
Name: NF4445_low_41
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 31717805 - 31718143
Alignment:
| Q |
14 |
gagacggacaactggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagata |
113 |
Q |
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| T |
31717805 |
gagacggacaactggtatcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtgaaggataaagata |
31717904 |
T |
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| Q |
114 |
aggcatcagatgagacaagaattttggtttgttgctttgtgcgacagaaagggaaagaaatataattc----tgtcaagcttttgcttcttttccaactt |
209 |
Q |
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| T |
31717905 |
aggcatcagatgagacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataattaattatgtcaagcttttgcttcttttccaactt |
31718004 |
T |
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| Q |
210 |
gaatcttcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatct-tatctaaaaggtcattgcaagatgaag |
308 |
Q |
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| T |
31718005 |
gaatattcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatctgtatctaaaaggtcattgcaagatgaag |
31718104 |
T |
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| Q |
309 |
aagcttgggggaaaagaagttcttagtttgagaggtgat |
347 |
Q |
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| T |
31718105 |
aaacttgggggaaaagaagtttttagtttgagaggtgat |
31718143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 31654383 - 31654479
Alignment:
| Q |
134 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagcttttgcttcttttccaacttgaatcttcaaatatattgtag |
230 |
Q |
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| T |
31654383 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagcttttacttggattccaccttgaaactttaaatatattgtag |
31654479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 31654230 - 31654334
Alignment:
| Q |
19 |
ggacaactggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataaggca |
118 |
Q |
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| T |
31654230 |
ggacaattggtatcctgtttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataaggga |
31654329 |
T |
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| Q |
119 |
tcaga |
123 |
Q |
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| T |
31654330 |
tcaga |
31654334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 31704751 - 31704810
Alignment:
| Q |
134 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagctttt |
193 |
Q |
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| T |
31704751 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagctttt |
31704810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 44901284 - 44901188
Alignment:
| Q |
134 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagcttttgcttcttttccaacttgaatcttcaaatatattgtag |
230 |
Q |
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| T |
44901284 |
atttcggtttgttcgtttgtgtgactgaaaggggaagaaatttaactctgttaagcttttacttcgctttcacgttgaaactacaaatatattgtag |
44901188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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