View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_44 (Length: 360)

Name: NF4445_low_44
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_44
NF4445_low_44
[»] chr2 (16 HSPs)
chr2 (228-341)||(31281738-31281851)
chr2 (170-343)||(31374695-31374869)
chr2 (17-140)||(31374910-31375034)
chr2 (185-332)||(31359873-31360021)
chr2 (14-122)||(31281877-31281986)
chr2 (164-331)||(31387017-31387185)
chr2 (36-330)||(31419101-31419388)
chr2 (206-283)||(31255796-31255874)
chr2 (195-267)||(31292802-31292875)
chr2 (36-107)||(31292979-31293050)
chr2 (36-110)||(31307399-31307473)
chr2 (36-112)||(31360611-31360687)
chr2 (228-283)||(31320991-31321046)
chr2 (229-283)||(31307198-31307252)
chr2 (31-113)||(31387221-31387303)
chr2 (36-84)||(31255988-31256036)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 31281851 - 31281738
Alignment:
Q  228 ttttcagagacctcagctttaacaacataagtggaacaattccgagtatctatgctaccaataacagtctgcgatacatgtacgaaattcatcgtagttt 327  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31281851 ttttcagagacctcagctttaacagcataagtggaacaattccaagtatctatgctaccaataacagtctgtgatacatgtacgaaattcatcgtagttt 31281752  T
Q  328 cttagcgtaatttg 341  Q
    ||| ||||||||||    
T  31281751 ctttgcgtaatttg 31281738  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 170 - 343
Target Start/End: Complemental strand, 31374869 - 31374695
Alignment:
Q  170 atgtttttatatgaaaaattttctctgtagatttttaactcattcacaatattatatattt-tcagagacctcagctttaacaacataagtggaacaatt 268  Q
    ||||||| | |||| ||||||||| ||||  || |||||| ||||  ||||| |||| ||| | |||||| |||||||||||||||||||||||||||||    
T  31374869 atgttttaacatgacaaattttctttgtatcttgttaactaattcttaatatgatatctttgttagagacgtcagctttaacaacataagtggaacaatt 31374770  T
Q  269 ccgagtatctatgctaccaataacagtctgcgatacatgtacgaaattcatcgtagtttcttagcgtaatttgtt 343  Q
    |||||||||||||||||||||||||||||| |||||||||| |||  |||| ||||||||||||| ||| |||||    
T  31374769 ccgagtatctatgctaccaataacagtctgagatacatgtatgaagctcattgtagtttcttagcataaattgtt 31374695  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 31375034 - 31374910
Alignment:
Q  17 aggcactcataaaaa-tcactgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaatatgaca 115  Q
    ||||||||||||||  || ||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||  | ||||||||||||||||||    
T  31375034 aggcactcataaaatgtcgctgtctatcttattggttcacaggattctgaggaattgcaatatcaacggaacactaccggaatatcttgggaatatgaca 31374935  T
Q  116 aaattaattcgcttgtaattgcata 140  Q
    | |||||||||||||||||||||||    
T  31374934 acattaattcgcttgtaattgcata 31374910  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 185 - 332
Target Start/End: Complemental strand, 31360021 - 31359873
Alignment:
Q  185 aaattttctctgtagatttttaactcattcacaatattatatat-tttcagagacctcagctttaacaacataagtggaacaattccgagtatctatgct 283  Q
    |||||||||| ||||  |||||||| |||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||    
T  31360021 aaattttctcagtagcattttaacttattctcaatatgatatctctttcagagacctcagctttaacaacataagtggaacaattccaagtacttatgct 31359922  T
Q  284 accaataacagtctgcgatacatgtacgaaattcatcgtagtttcttag 332  Q
     |||  |||||| ||  ||||||||| ||||||||||||||||| ||||    
T  31359921 gccatgaacagtttggaatacatgtatgaaattcatcgtagttttttag 31359873  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 31281986 - 31281877
Alignment:
Q  14 gagaggcactcataa-aaatcactgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaatatg 112  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || | |||||||||| ||||    
T  31281986 gagaggcactcctaataaatctccgtctatcttattgtttcacagggttctgaggaattgcaatatcaacggaacactaactcaatatcttgggattatg 31281887  T
Q  113 acaaaattaa 122  Q
     |||||||||    
T  31281886 tcaaaattaa 31281877  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 331
Target Start/End: Complemental strand, 31387185 - 31387017
Alignment:
Q  164 gcagggatgtttttatatgaaaaattttctctgtagatttttaactcattcacaatattatatat-tttcagagacctcagctttaacaacataagtgga 262  Q
    |||||||||||||| ||  | |||| |||| ||| | |||||||||||||| |||||| |||| | ||||||||||||||||||||||||  ||||||||    
T  31387185 gcagggatgtttttttagaagaaatattctttgttgctttttaactcattctcaatatgatatctctttcagagacctcagctttaacaaattaagtgga 31387086  T
Q  263 acaattccgagtatctatgctaccaataacagtctgcgatacatgtacgaaattcatcgtagtttctta 331  Q
    || |||||||||| || | | ||||| ||||   ||  ||||||||| |||||||||| ||||||||||    
T  31387085 acgattccgagtacctttaccaccaaaaacaaaatgaaatacatgtatgaaattcatcctagtttctta 31387017  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 330
Target Start/End: Original strand, 31419101 - 31419388
Alignment:
Q  36 tgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaatatgacaaaattaattcgcttgtaatt 135  Q
    ||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||||| |  ||||| ||| ||| |||| |||||  | ||||||| |    
T  31419101 tgtctatcttattgtttcacaggattcttaggaattgcaacatcaacggaacgctacctgaaaatcttaggactataacaacattaaaacacttgtaaat 31419200  T
Q  136 gcatactagctctccatcctattatgttgcagggatgtttttatatgaaaaattttctctgtagatttttaactcattcacaatattatatat-tttcag 234  Q
    |||||||   ||| |     ||||||||  ||  ||| |||| ||||| |  |||||||||||   ||||||||| ||  |||||| |||||| ||||||    
T  31419201 gcatact--ttctac-----attatgttatagcaatg-ttttctatgacaggttttctctgtattgttttaactcgttttcaatatgatatatctttcag 31419292  T
Q  235 agacctcagctttaacaacataagtggaacaattccgagtatctatgctaccaataacagtctgcgatacatgtacgaaattcatcgtagtttctt 330  Q
    ||||||| ||||||||||  ||||||||||||||||||| |  ||||||  ||  ||| || ||  ||| |||||||||||||||| |||| ||||    
T  31419293 agacctcggctttaacaatttaagtggaacaattccgaggacgtatgctgacatgaacggtttgaaatatatgtacgaaattcatcatagtctctt 31419388  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 31255874 - 31255796
Alignment:
Q  206 aactcattcacaatattatatat-tttcagagacctcagctttaacaacataagtggaacaattccgagtatctatgct 283  Q
    ||||||||| |||||| ||| || ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  31255874 aactcattctcaatatgatacatgtttcagagacctcagctttaacaacttaagtggaacgattccgagtacctatgct 31255796  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 31292875 - 31292802
Alignment:
Q  195 tgtagatttttaactcattcacaatattatatat-tttcagagacctcagctttaacaacataagtggaacaat 267  Q
    |||||||| ||||||||||| || ||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  31292875 tgtagattcttaactcattctcattatgatatatctttcagagacctcagctttaataacataagtggaacaat 31292802  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 31293050 - 31292979
Alignment:
Q  36 tgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttggga 107  Q
    ||||| ||||||||||||||||| |||||||||| |||||  |||||||||| |||||||| ||||||||||    
T  31293050 tgtctttcttattgtttcacaggattctgaggaactgcaaaatcaacggaacactacctaaatatcttggga 31292979  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 31307473 - 31307399
Alignment:
Q  36 tgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaata 110  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||| |||| ||||||| |  ||||||||||||    
T  31307473 tgtctatcttattgtttcatagggttctgaggaattgcaacatcaatggaatgctacctgaaaatcttgggaata 31307399  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 31360687 - 31360611
Alignment:
Q  36 tgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaatatg 112  Q
    |||||||||| |||||||||||| |||||||||| |||||  |||| ||||  ||||   |||||||||||||||||    
T  31360687 tgtctatctttttgtttcacaggattctgaggaactgcaacatcaatggaaaactactcgattatcttgggaatatg 31360611  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 31321046 - 31320991
Alignment:
Q  228 ttttcagagacctcagctttaacaacataagtggaacaattccgagtatctatgct 283  Q
    ||||||||||||||||||||||||   |||| |||||||| ||||||| |||||||    
T  31321046 ttttcagagacctcagctttaacagattaagaggaacaatcccgagtaactatgct 31320991  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 31307252 - 31307198
Alignment:
Q  229 tttcagagacctcagctttaacaacataagtggaacaattccgagtatctatgct 283  Q
    ||||||||||||||||||||||||  |||||||||  |||||||| | |||||||    
T  31307252 tttcagagacctcagctttaacaaattaagtggaatgattccgaggacctatgct 31307198  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 31387303 - 31387221
Alignment:
Q  31 atcactgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacggaacgctacctaattatcttgggaatatga 113  Q
    |||| |||||| |||||||||||||||| |||| ||||||||  || ||||||||||  |||| |  |||||||| |||||||    
T  31387303 atcattgtctaacttattgtttcacaggattctaaggaattgtcatatcaacggaacattaccgatatatcttggaaatatga 31387221  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 31256036 - 31255988
Alignment:
Q  36 tgtctatcttattgtttcacagggttctgaggaattgcaatgtcaacgg 84  Q
    ||||||||||| ||||||||||| |||||||||| |||||  |||||||    
T  31256036 tgtctatcttaatgtttcacaggattctgaggaactgcaacatcaacgg 31255988  T

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