View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_45 (Length: 354)
Name: NF4445_low_45
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 25528163 - 25527832
Alignment:
| Q |
13 |
gtggaaaactcttttccattcccacgataaaatgccactgaagagagtatgtaatacaagtcataattagtatgggtcaaaacaagcaagtcataatgaa |
112 |
Q |
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| T |
25528163 |
gtggaaaactcttttccattcccacactaaaatgccactgaagtgagtatgaaatacaagtcataattagtatgggtcaaaacaagcaagtcataatgaa |
25528064 |
T |
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| Q |
113 |
aaggaaaaagatacacacttcatcttctcaaactaaactaaacaggtttaattaagaaaggtgttaagacaattctgctgggggtagtatatataagaag |
212 |
Q |
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| T |
25528063 |
aataaata-------cacttcatcttctcaaactaaactaaacaggtttaattaagaaaggtgttaagacaattctgctggtggtagtatatataagaag |
25527971 |
T |
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| Q |
213 |
aaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaactcaacaatgtcactctgtcgccacctcctcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25527970 |
aaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaactcaacaatgtcactctttcgccacctcctcc |
25527871 |
T |
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| Q |
313 |
tccgccgttcctccgccgtcactctctgctcctcctcaa |
351 |
Q |
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| T |
25527870 |
tccgccgttcctccgccgtcactctccgttccttctcaa |
25527832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 25535954 - 25535861
Alignment:
| Q |
261 |
cgaaattttagggtttca---aactcaacaatgtcactctgtcgccacctcctcctccgccgttcctccgccgtcactctctgctcctcctcaa |
351 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
25535954 |
cgaaatcttagggtttcattcaactcaacaatgtcactcctccgccacctcctcctccgccgttcctccgccgtcactctccgttccttctcaa |
25535861 |
T |
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