View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_47 (Length: 349)

Name: NF4445_low_47
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_47
NF4445_low_47
[»] chr8 (1 HSPs)
chr8 (1-331)||(30054940-30055257)
[»] chr3 (10 HSPs)
chr3 (17-72)||(8400207-8400262)
chr3 (18-72)||(5368748-5368802)
chr3 (18-72)||(5374505-5374559)
chr3 (250-327)||(5367660-5367737)
chr3 (256-327)||(5374214-5374285)
chr3 (17-63)||(5367951-5367997)
chr3 (269-331)||(8400489-8400551)
chr3 (250-327)||(5356012-5356089)
chr3 (250-331)||(5362440-5362521)
chr3 (17-63)||(5362735-5362781)
[»] chr7 (1 HSPs)
chr7 (25-69)||(30597955-30597999)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 30054940 - 30055257
Alignment:
Q  1 atactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaattcgtaatacctggacactatgtgaaac 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         |||  | | ||    ||    
T  30054940 atactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagt---------tggtgaatttg----ac 30055026  T
Q  101 agcgtattctacgatactattcagtattcggggttccacggaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagagac 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055027 agcgtattctacgatactattcagtattcggggttccacgaaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagagac 30055126  T
Q  201 aggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatcttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055127 aggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatcttg 30055226  T
Q  301 ttgagagtatgcaagtttgaaaagcttcttt 331  Q
    |||||||||||||||||||||||||||||||    
T  30055227 ttgagagtatgcaagtttgaaaagcttcttt 30055257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 8400207 - 8400262
Alignment:
Q  17 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 72  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  8400207 gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaa 8400262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5368802 - 5368748
Alignment:
Q  18 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 72  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5368802 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5368748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5374559 - 5374505
Alignment:
Q  18 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 72  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5374559 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5374505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 5367737 - 5367660
Alignment:
Q  250 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagctt 327  Q
    ||||| |||||||||||||||| ||||| |||| |||||  |||||||| || ||||||||| |||||||||||||||    
T  5367737 tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagctt 5367660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 5374285 - 5374214
Alignment:
Q  256 ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagctt 327  Q
    |||||||||||||||||| ||| |||| |||||  |||||||| || ||||||||| |||||||||||||||    
T  5374285 ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagctt 5374214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5367997 - 5367951
Alignment:
Q  17 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 63  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  5367997 gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagc 5367951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 8400489 - 8400551
Alignment:
Q  269 tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttcttt 331  Q
    ||||||||| |||||||||| | ||||||||||||||||||  |||||||||||| |||||||    
T  8400489 tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttcttt 8400551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 5356089 - 5356012
Alignment:
Q  250 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagctt 327  Q
    ||||| |||||||||||||||  ||||| |||| |||||  |||||||| || ||||||||| |||||||||||||||    
T  5356089 tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagctt 5356012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 5362521 - 5362440
Alignment:
Q  250 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttcttt 331  Q
    ||||| |||||||||| ||||||| ||| ||||  ||||  ||||||| | | |||||||||||||||||||||||||||||    
T  5362521 tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttcttt 5362440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5362781 - 5362735
Alignment:
Q  17 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 63  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  5362781 gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagc 5362735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 30597955 - 30597999
Alignment:
Q  25 aaaggtcaagagaagttaaagtttgagatgaaaataagcaagatg 69  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  30597955 aaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaagatg 30597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University