View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_5 (Length: 766)
Name: NF4445_low_5
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 688; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 11 - 747
Target Start/End: Original strand, 36320509 - 36321249
Alignment:
| Q |
11 |
catcatcatctgatatcatat----cgtccccaaaaagaagcatgatcatcataatagttgtctcatttgtttacatttataacgatatgacagttgcaa |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36320509 |
catcatcatctgatatcatatatatcgtccccaaaaagaagcatgatcatcataatagttgtctcatttgtttacatttataacgatatgacagttgcaa |
36320608 |
T |
|
| Q |
107 |
atccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacagggcatttatcaataatg |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36320609 |
atccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaataatg |
36320708 |
T |
|
| Q |
207 |
gcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttctctgggttgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36320709 |
gcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttctctgggttgc |
36320808 |
T |
|
| Q |
307 |
aagatcgcgtggggtaccatgcatgatatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatat |
406 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36320809 |
aagatcgtgtggggtaccatgcatgatatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatat |
36320908 |
T |
|
| Q |
407 |
aatgttaacctcccttaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtga |
506 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36320909 |
aatgttaacctcccctaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacttacaagccacatgcaacgtaggtga |
36321008 |
T |
|
| Q |
507 |
ctgccactgtaaaatttatttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36321009 |
ctgccactgtaaaatttatttagaaagaactattaaaaaacgtttcatgaaaacaataagttatcaaaagttgaatgcaggaacaaattgagattttggt |
36321108 |
T |
|
| Q |
607 |
attaattacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36321109 |
attaattacttgtcggctatgcatttgagggtatcattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgc |
36321208 |
T |
|
| Q |
707 |
aacaaatcttcaccaaattctgaaaagtatagggtgacttc |
747 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36321209 |
aacaaatcttcaccaaattctgaaaagcatagggtgacttc |
36321249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 102 - 714
Target Start/End: Original strand, 36313206 - 36313816
Alignment:
| Q |
102 |
tgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacagggcatttatcaa |
201 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||| ||| ||||| |||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
36313206 |
tgcaaatcattaatctgatcaatgcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaa |
36313305 |
T |
|
| Q |
202 |
taatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttctctgg |
301 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||| || | |
|
|
| T |
36313306 |
taatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcaga |
36313405 |
T |
|
| Q |
302 |
gttgcaagatcgcgtggggtaccatgcatg---atatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcagatataatg |
398 |
Q |
| |
|
|| |||||| | ||| || || | |||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| || | |
|
|
| T |
36313406 |
gtcacaagat------gtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtag |
36313499 |
T |
|
| Q |
399 |
caaaatataatgttaacctcccttaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaac |
498 |
Q |
| |
|
| | ||| ||||| | ||||||||||||||||| ||||||||||||||||||| || |||||||| | | ||| |||||||| ||||| || |
|
|
| T |
36313500 |
tgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgtaatcctcgagcaatctacaagccccatgcgac |
36313599 |
T |
|
| Q |
499 |
gtaggtgactgccactgtaaaattt-atttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattga |
597 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||||||||||||||| | ||||||| |||||| ||||||||| | || |||| ||||||| | ||||| |
|
|
| T |
36313600 |
ataggtgtctgccactgtaaaatttgaattaaaaagaactattaaaagaagtttcataaaaacagtaagatatctacagatgaaagcaggaatacattga |
36313699 |
T |
|
| Q |
598 |
gattttggtattaattacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttga |
697 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| ||| || |||||||||||||||||||| ||||| || ||||||||| ||||| || |||| |
|
|
| T |
36313700 |
gattttggtattaattacttatcagctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgaccacaacttcggttga |
36313799 |
T |
|
| Q |
698 |
taacattgcaacaaatc |
714 |
Q |
| |
|
||| ||| || ||||| |
|
|
| T |
36313800 |
caactttgtaaaaaatc |
36313816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 138 - 689
Target Start/End: Original strand, 36333309 - 36333862
Alignment:
| Q |
138 |
aaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtc |
237 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||| | |||| ||||||| |
|
|
| T |
36333309 |
aaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcctttatcaataatggcgagcacaccaagttgagtgagcttgtgtc |
36333408 |
T |
|
| Q |
238 |
ctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttctctgggttgcaagatcgcgtggggt---accatgcatgata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| |||| | || |||| ||||||| |
|
|
| T |
36333409 |
ctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttatcagagtcgcaagattgcgtagagtaccaccacacatgata |
36333508 |
T |
|
| Q |
335 |
tttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccttaaccgcggaagc |
434 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||||| |||||| || | || | |||| || ||||| || | | ||| | |||||| |
|
|
| T |
36333509 |
tttaagcaatttcaaaagatggcaagatcgaccaagaacttca--agagacatcggttagacagcaatatgaaatgtccactttctccaactgtggaagc |
36333606 |
T |
|
| Q |
435 |
tttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaattt-atttagaaag |
533 |
Q |
| |
|
||||| | |||| || ||||||||||| ||||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||| | ||| |||| |
|
|
| T |
36333607 |
tttctcatggctttaccaaatcctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctgactgccactgcaaaatttgaattaaaaag |
36333706 |
T |
|
| Q |
534 |
aactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaattacttgtcggctatgcatttg |
633 |
Q |
| |
|
||||||||| ||| | |||| |||||| ||| |||| | ||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
36333707 |
aactattaacaaatgcttcaaaaaaacagtaatatatatacagttgaatgcaggaataaattaagattttggtattaattactgatcagctatgcattta |
36333806 |
T |
|
| Q |
634 |
agggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact |
689 |
Q |
| |
|
||| || || | ||||| || || ||||||||||| |||||||||||| ||||| |
|
|
| T |
36333807 |
aggagatcatcgatgcaaaaacgcttaatatcaatgtcttcaagatgaccacaact |
36333862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 85 - 716
Target Start/End: Original strand, 36327431 - 36328050
Alignment:
| Q |
85 |
tataacgatatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaag |
184 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36327431 |
tataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgtcaagagactcaag |
36327530 |
T |
|
| Q |
185 |
aacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagca |
284 |
Q |
| |
|
|| |||||| |||||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
36327531 |
aagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataaca |
36327630 |
T |
|
| Q |
285 |
agcgccattttctctgggttgcaagatcgcgtggggtaccatgcatgatatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagaga |
384 |
Q |
| |
|
| ||||||||| || | || |||||| | || | |||||| | ||||||||| |||||| |||||||||| | ||||| ||||||| |||||| | |
|
|
| T |
36327631 |
aacgccattttatcagagtcacaagat-tcatgcg--accatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaaa |
36327727 |
T |
|
| Q |
385 |
cctcagatataatgcaaaatataatgttaacctcccttaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtac |
484 |
Q |
| |
|
| || | || |||| | ||||| || || | || | ||||||||||| | |||||| ||||||||| || ||||||| | | ||| ||| |
|
|
| T |
36327728 |
catcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttcgagcaatttac |
36327827 |
T |
|
| Q |
485 |
aagccacatgcaacgtaggtgactgccactgtaaaatttat-ttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatg |
583 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||| | ||||| |||| |||| ||| ||||||| |
|
|
| T |
36327828 |
aagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaa-aata------caa---ttgaatg |
36327917 |
T |
|
| Q |
584 |
caggaacaaattgagattttggtattaattacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgacc |
683 |
Q |
| |
|
|| ||| ||| | ||||||||||||||||||||| || |||||| | |||||| || | |||||||| || |||||||| |||| ||| ||||||| |
|
|
| T |
36327918 |
caagaataaaataagattttggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgact |
36328017 |
T |
|
| Q |
684 |
gcaactccgtttgataacattgcaacaaatctt |
716 |
Q |
| |
|
|| ||| | ||||| | |||||||||| ||||| |
|
|
| T |
36328018 |
gctacttcttttgacagcattgcaacatatctt |
36328050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 334 - 571
Target Start/End: Original strand, 36325813 - 36326050
Alignment:
| Q |
334 |
atttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccttaaccgcggaag |
433 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | || | ||||| ||||| | |||| ||||||| |
|
|
| T |
36325813 |
atttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcggaag |
36325912 |
T |
|
| Q |
434 |
ctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatttatttagaaag |
533 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
36325913 |
ctttctcaaggcttcactaaatcctttatttgtcatcccccaacaatttacaagccgcatgcaaagtaggtgactgccactgtaaaatttatttaaaaag |
36326012 |
T |
|
| Q |
534 |
aactattaaaaaacgtttcatgaaaacaataagatatc |
571 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36326013 |
aactattaaaaaacgttccatgaaaacaataagatatc |
36326050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 92 - 390
Target Start/End: Original strand, 36335967 - 36336262
Alignment:
| Q |
92 |
atatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggg |
191 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||| | ||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
36335967 |
atatggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagaggg |
36336066 |
T |
|
| Q |
192 |
catttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgcca |
291 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
36336067 |
catttatcaataatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgcca |
36336166 |
T |
|
| Q |
292 |
ttttctctgggttgcaaga-tcgcgtggggtaccatgcatgatatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcag |
390 |
Q |
| |
|
|||| || | || ||||| || | | | |||| || ||| | |||| |||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
36336167 |
ttttatcagagtcacaagagtcaagcg----agcatgaattatactgaagccatttcaaaagagggcaagatcgaccaagggcttcaagagtggcctcag |
36336262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 36325512 - 36325777
Alignment:
| Q |
36 |
cccaaaaagaagcatgatcatcataatagttgtctcatttgtttacatttataacgatatgacagttgcaaatccttgatctgttcaatgcaccttttcg |
135 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| ||||| | |||||| ||||| |||||||||||| ||||||| || ||||| ||||| |
|
|
| T |
36325512 |
cccaaaaagaagcatgatcgtcatattagttgtctcattggtttataagtataacaatatgtcagttgcaaatcattgatcttgtcgatgcaacttttat |
36325611 |
T |
|
| Q |
136 |
ttaaatcttcac--tcaaataatga----caatcactaatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgag |
229 |
Q |
| |
|
||||||||| ||| | ||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
36325612 |
gcaaatcttcatcttcatacaatgaaagacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgag |
36325711 |
T |
|
| Q |
230 |
attgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccatttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
36325712 |
cttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaataacaaaagccatttt |
36325777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 613 - 689
Target Start/End: Original strand, 36326051 - 36326127
Alignment:
| Q |
613 |
tacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact |
689 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
36326051 |
tacttgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgaccgcaact |
36326127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 30621491 - 30621598
Alignment:
| Q |
166 |
taatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccagg |
265 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||| ||| ||| ||| |||| |||||||||| || ||| | ||||||||||||| ||| ||||| |
|
|
| T |
30621491 |
taatgtcgagagattcaagaagagggcatccatcaagaatagcaagcaacccaacttcactgagagggtttccatgaatatcaagatggcgtagcccagg |
30621590 |
T |
|
| Q |
266 |
catcgttt |
273 |
Q |
| |
|
||| |||| |
|
|
| T |
30621591 |
cattgttt |
30621598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 36309078 - 36309131
Alignment:
| Q |
98 |
cagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaa |
151 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
36309078 |
cagttgcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaa |
36309131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 16052979 - 16053090
Alignment:
| Q |
170 |
gtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatc |
269 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||| |||| | | |||| |||| ||| || |||||||||| ||||||| || |||| |
|
|
| T |
16052979 |
gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatc |
16053078 |
T |
|
| Q |
270 |
gtttcagcaata |
281 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
16053079 |
gtatcagcaata |
16053090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 422 - 524
Target Start/End: Original strand, 16053231 - 16053333
Alignment:
| Q |
422 |
taaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaat |
521 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||| | || ||| | | ||| ||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
16053231 |
taacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtaggtgactgccactgtaaaat |
16053330 |
T |
|
| Q |
522 |
tta |
524 |
Q |
| |
|
||| |
|
|
| T |
16053331 |
tta |
16053333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 42563569 - 42563630
Alignment:
| Q |
231 |
ttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccat |
292 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| |||| ||||||| ||| ||| |||||| |
|
|
| T |
42563569 |
ttgtgtccattgatatcaagatggcacagaccagacatcatttcagcgataacaaacgccat |
42563630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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