View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_52 (Length: 337)
Name: NF4445_low_52
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_52 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 21773474 - 21773145
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21773474 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaacttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
21773375 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21773374 |
cccgtagtcgttatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
21773275 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21773274 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
21773175 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgaccttttcatctc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21773174 |
ggtatgtcatcatcttgaccttttcatctc |
21773145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21787002 - 21786674
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21787002 |
cactcccaagggaattgagcaaaatcccttttgatcttagtaacttgacatcttcaggattgtcgataagcgagtccatgaaagctgcaaaagaacaaat |
21786903 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
21786902 |
cccgtagtcgttgtcaaaatctggacacatctcatatgctatcaggttgaggaaagtagcggctgaagtgtcgtccacaacgatctcaggaagagtcagt |
21786803 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
21786802 |
tctgcagcgaacaatccttcggagaaatctatgtctcttggccttcgtgtcttgcttgacttaagtcttattcctacagctcttagatcttgtatgttcc |
21786703 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgaccttttcatct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21786702 |
ggtatgtcatcatcttgaccttttcatct |
21786674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 21717336 - 21717014
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| ||| || |||||||||||||||| |
|
|
| T |
21717336 |
cactcccaagggaattgagcaaaatcccttttgatctcagtaccttcacatcttcaggatggttgataagcgagcacataaaagctgcaaaagaacaaaa |
21717237 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
||| ||||| || | |||||||||||||||||||||||| |||||||||||||| |||| |||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
21717236 |
cccatagtcgttgttaaaatctggacacatctcatatgcaatcaggttgaggaaagtagcggctgaagtgtcgtccacaacgatctcaggaagagtcagt |
21717137 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
21717136 |
tcagcagtgaaccatccttcggagaaatctatgtctcttggccttcgtgtcttgcttgacttaagtcttattcctaatgcttttagatcttttatgttcg |
21717037 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgaccttttca |
326 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
21717036 |
tgtat---atcatcttgaccttttca |
21717014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 21683263 - 21682965
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
21683263 |
cactcccaagggaattgagcaaaattccttttgatctcagtaccttcacatcttcaggatggtcgatgagcgagtccataaaagctacaaaagaacaaat |
21683164 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||| |
|
|
| T |
21683163 |
tccgtagtcgttgtcaaaatttggacacatctcatatgctatcaggttgaggaaagtagtggctgatgtgtcgtccacaacgatctcaggaagagttagt |
21683064 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttc |
299 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||| ||||||||| |||||||||||||||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
21683063 |
tctgcagtgaaccatccttcggtgaaatctatgtcttttggccttcgtgtcttgcttgacttaagtcttattcctagtgcttttagatcttttatgttc |
21682965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21728036 - 21727711
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||| ||||||||| |||||||| || | | ||||||||||||| |
|
|
| T |
21728036 |
cactcccaagggaattgagcgaaatcccttttgatctcatttccttcacatcttcaggatggtcgataagtgagtccataaaagatacaaaagaacaaat |
21727937 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
||||| || || | ||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||| ||||| |||||||| ||| |
|
|
| T |
21727936 |
tccgtaatcgttgtcaaaatctggacacatctcatatgctatcaggttgaggaaagtagcggctgatatgttgtccacaacgatctcgggaagagttagt |
21727837 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
21727836 |
tctgcagtgaaccatccttcggagaaatctatgtctcttggccttcgtctcttgcttgacttaagtcttattcctaatgcttttagatcttttatgttcg |
21727737 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgaccttttcatct |
329 |
Q |
| |
|
|||| |||||||||| |||||||||| |
|
|
| T |
21727736 |
agtat---atcatcttgagcttttcatct |
21727711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 21648143 - 21647836
Alignment:
| Q |
3 |
ctcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||| || ||||||||||| ||||||||||||||||| | |
|
|
| T |
21648143 |
ctcccaagggaattgagcaaaatctcttttgatctcaatagcttcacaacttcaggatggtcgatgagtgagtccatgaaagctgcaaaagaacaaattc |
21648044 |
T |
|
| Q |
103 |
cgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttc |
202 |
Q |
| |
|
||||| || | |||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||| || | |
|
|
| T |
21648043 |
tgtagttgttcttaaaatctggacacatctcatatgctatcaggttgagataagtagtagctgatgagtcgtccacaacgatctcaggtagagttagctt |
21647944 |
T |
|
| Q |
203 |
tgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttccgg |
302 |
Q |
| |
|
|||| | ||| |||||||||||||||| | ||||||||| |||| ||| |||||||||||| |||||||||| | |||||||||||||||| ||| | |
|
|
| T |
21647943 |
tgcaatcaaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctg |
21647844 |
T |
|
| Q |
303 |
tatgtcat |
310 |
Q |
| |
|
|||||||| |
|
|
| T |
21647843 |
tatgtcat |
21647836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 21789760 - 21789442
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| || || ||||||||||| |||||||| |||||||| |
|
|
| T |
21789760 |
cactcccaagggaattgagcaaaatcccttttgatctcaattccttcacatcttcaggacggtcaatgagtgagtccatgaaagctgcaaacgaacaaat |
21789661 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
21789660 |
tccgtagtcgttctcaaaatctggacacatctcatatgctatcaggttgaggaaagttgcggctgaagtgtcgtccacaacgatctcaggaagagtcagt |
21789561 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
| |||| |||| ||||| |||||||||||| |||| ||||||| | ||| |||||||||| ||||||| || ||||||||||||||||| ||| |
|
|
| T |
21789560 |
ttcgcagcgaaccatcctgcagagaaatctacgtctgttggcctccgtgtcgcacttgacttaagtcttattccgactgctcttagatcttgtatgctcc |
21789461 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgac |
319 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21789460 |
tgtatgtcatcatcttgac |
21789442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 21666906 - 21666607
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||| | || ||||||||||||||| ||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
21666906 |
cactcccaaagcaattgagcaaaatcccttttgatctcaattccctcacatcttcaggatggtcgataagtgactcgatgaaagctgcaaaagaacaaat |
21666807 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21666806 |
cccgtagtcattcttaaaatctggacacatctcatatgctatcttattgaggaaaatagtggctgatgtgtcgtccacaacgatctcaggaagagtcagt |
21666707 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
| |||| |||| ||||| | |||||||||| |||||| ||| || |||||||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
21666706 |
ttcgcagcgaaccatcctgcggagaaatctaagtctctcagccatcgtgtcttgcttgacttaactcttattcctactgcttttagatcttgtatgttcc |
21666607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21653472 - 21653160
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
21653472 |
cactcccaagggaattgagcaaaatcccttttgatcttagtaccttcacatcttcaggatcttcaataagtgagtcaatgaaagctgcaaaagaacaaat |
21653373 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|| ||||| || | |||||| |||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||| |||||||||||| | ||| |
|
|
| T |
21653372 |
tccatagtcgttctcaaaatcaggacacatctcatatgctatcaagttgaggaaagtagtggctgaagtgtcgtccacaacgatctcaggaagaattagt |
21653273 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
| ||| || | | ||||||| |||||| |||||| ||||||| | || |||||||||||| ||| |||| | || |||||||||||||||||| |
|
|
| T |
21653272 |
tttgcggtaagccatccttcgtagaaattaatgtcttttggcctacgtgtgaagcttgacttaaatcttactcctgctgcttttagatcttgtatgttcc |
21653173 |
T |
|
| Q |
301 |
ggtatgtcatcat |
313 |
Q |
| |
|
||||||||||| |
|
|
| T |
21653172 |
tatatgtcatcat |
21653160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21711315 - 21710987
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || |||||| |||||||||| || || || ||||||||||| |||||||||||||||| |
|
|
| T |
21711315 |
cactcccaagggaattgagcaaaatcccttttgatctcaatagcttcacttcttcaggatgctcaatgagtgagtccatgaaagctgcaaaagaacaaaa |
21711216 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|| ||||| || | ||||||||||||||||||||| ||||| | ||||||||| |||| ||||||| |||||||||||| |||||||| | |||||| |
|
|
| T |
21711215 |
tccatagtcgttcttaaaatctggacacatctcatacgctattaagttgaggaaagtagcagctgatgtgtcgtccacaacgatctcaggtaatgtcagt |
21711116 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
| |||| || ||||||| |||||||| ||||||||||| ||| |||||||| ||||||| ||||||||| | ||||||||||| |||| ||| |
|
|
| T |
21711115 |
tttgcaaccaatcatccttcggagaaatccatgtctcttggactttgtgtcttgctagacttaagtcttattcctatttttcttagatcttttatgctcc |
21711016 |
T |
|
| Q |
301 |
ggtatgtcatcatcttgaccttttcatct |
329 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |
|
|
| T |
21711015 |
tgtatgtcatcatcttgacgtttacatct |
21710987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 15715221 - 15714910
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||| |||||| |||||| ||| ||| |||| ||||||||| || |
|
|
| T |
15715221 |
cactcccaagtaaattgagcaaaatcccttttgatctcaattccttcacatcttcaggacggtcgatgagcgaggccaagaaagctgaaaaagaacagat |
15715122 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
| ||||||| |||| |||||||||||| ||||||||||||||| |||||||||| |||| ||||| | || ||||||| ||| ||||||||||||| |
|
|
| T |
15715121 |
ctcgtagtcgttatcaaaatctggacaaatctcatatgctatctggttgaggaaagtagcggctgtagtgttgtccacacggatccgaggaagagtcagt |
15715022 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
| |||| ||| ||||| ||||||||||||| ||| |||||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
15715021 |
ttcgcagcaaaccatcctgcagagaaatctatctctgttggcctttgtgtcttgcttgacttaagtcttattcctactgctcttagatcttgtatgctcc |
15714922 |
T |
|
| Q |
301 |
ggtatgtcatca |
312 |
Q |
| |
|
|||||| |||| |
|
|
| T |
15714921 |
tgtatgtaatca |
15714910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 21698031 - 21697717
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||| ||| || || || |||||||| ||| || |||||||||| |
|
|
| T |
21698031 |
cactcccaaggcaattgagcaaaatccgttttgatctcaattccttcacatcttcaggatggtcaatgagtgactccatgaaagctacataagaacaaat |
21697932 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||||||||| ||||| | ||| |||| ||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
21697931 |
tacgtagtcgttcttaaaatcgggacacatctcatatgctatcagattgagataagtaaaggctaatgtgtcgtccacaacgatctcaggtagagtcagt |
21697832 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
|||| |||| ||||||| ||||||| ||||||||||| ||| |||||||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
21697831 |
gtcgcagcgaaccatccttcgcagaaatccatgtctcttgggctttgtgtcttgcttgacttaagtcttattcctactgcttttagatcttgtatgttcc |
21697732 |
T |
|
| Q |
301 |
ggtatgtcatcatct |
315 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
21697731 |
tatatgtaatcatct |
21697717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 21630367 - 21630061
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||| | ||||||| |||||||||| |||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
21630367 |
cactcccaagtttattgagcaaaatcccatttgatctcaattccttcacgtcttcaggatggtcgatgagcgagtccatgaaagctagaaaagaacaaat |
21630268 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|||| || || | ||||||||||||||||||||||||||||||||||||||| || |||||| || | ||||| ||| ||||||||||||| |
|
|
| T |
21630267 |
ttcgtaatcgttctcaaaatctggacacatctcatatgctatcaggttgaggaacatatgggctgaaccgttggtcacaatgatcataggaagagtcagt |
21630168 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
||||||| |||| ||||| | ||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
21630167 |
tctgcagcgaaccatcctccgcagaaatctatgtctcttggcctttgtgtcatgcttgtcttaagtcttattcctacagcttttagatcttgtatgttcc |
21630068 |
T |
|
| Q |
301 |
ggtatgt |
307 |
Q |
| |
|
|||||| |
|
|
| T |
21630067 |
tgtatgt |
21630061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 21994823 - 21994602
Alignment:
| Q |
12 |
gaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcat |
111 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||||||||| |||||| || ||||||||||| | ||||||||||||||| || ||||| | |
|
|
| T |
21994823 |
gaattgagcaaaatcccttttgatctcaataacttcacatcttcaggatggtcgatgagtgagtccatgaaagttgcaaaagaacaaattccatagtcgt |
21994724 |
T |
|
| Q |
112 |
tatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttctgcagtgaa |
211 |
Q |
| |
|
| | |||||||||||||||||| |||||||||||||| |||| |||| ||||||| ||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
21994723 |
tctcaaaatctggacacatctcgtatgctatcaggttaaggatagtagcggctgatctatcgtccacaacgatctcaggaagagtcaatttcgcagtgaa |
21994624 |
T |
|
| Q |
212 |
caatccttcagagaaatctatg |
233 |
Q |
| |
|
| ||||||||| ||| |||||| |
|
|
| T |
21994623 |
ccatccttcagcgaattctatg |
21994602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 21658031 - 21657742
Alignment:
| Q |
20 |
caaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcattatgaaaa |
119 |
Q |
| |
|
||||||| |||||||||||| | ||||||| |||||||||| |||||| |||||||||||||| | | ||||||||||||| || || || || | |||| |
|
|
| T |
21658031 |
caaaatcccttttgatctcaattccttcacgtcttcaggatggtcgatgagcgagtccatgaaagttacaaaagaacaaattccataatcgttctcaaaa |
21657932 |
T |
|
| Q |
120 |
tctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttctgcagtgaacaatcctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||| || | ||||| ||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
21657931 |
tctggacacatctcatatgctatcaggttgcggaacgtatgggctgaactgttggacacaatgatcataggaagagtcagttctgcagagaaccatcctc |
21657832 |
T |
|
| Q |
220 |
cagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttccggtatgtca |
309 |
Q |
| |
|
| ||||||||||||||||| ||||| ||| |||||||||||| |||||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
21657831 |
cgcagaaatctatgtctcttagcctttgtgtcatgcttgacttaagtcttattcctactgcttttagatcttgtatgttcctgtatgtca |
21657742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 21793401 - 21793102
Alignment:
| Q |
1 |
cactcccaagggaattgagcaaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaat |
100 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||| | |||||||||||||||||| |||||| || || |||||||| || ||||||||||||| |
|
|
| T |
21793401 |
cactcccaagtttattgcgcaaaatcccttttgatctcaattccttcacatcttcaggatggtcgatgagtgactccatgaaaactacaaaagaacaaat |
21793302 |
T |
|
| Q |
101 |
cccgtagtcattatgaaaatctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagt |
200 |
Q |
| |
|
|||| | || | ||||||||||||||||||||||||| ||||||||| ||| |||| |||||| |||| ||||| ||| ||||||||||||| |
|
|
| T |
21793301 |
ttcgtatttgttctcaaaatctggacacatctcatatgctgtcaggttgaagaaagtagaggctgaactgtcggtcacaatgatcataggaagagtcagt |
21793202 |
T |
|
| Q |
201 |
tctgcagtgaacaatccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttcc |
300 |
Q |
| |
|
|||||||||||| |||| || ||||||| ||||||| |||| ||| || ||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
21793201 |
tctgcagtgaaccatccatcggagaaatgtatgtcttttgggcttggtgtattgcttgacttaagtcttattcctacagcttttagatcttgtatgttcc |
21793102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 21705875 - 21705651
Alignment:
| Q |
20 |
caaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcattatgaaaa |
119 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||| |||||| || |||||||| || ||| || ||||||| ||||| |||| || | |||| |
|
|
| T |
21705875 |
caaaatcccttttgatctcaataccttcacatcttccggatggtcgatgagtgagtccatcaaagctacataagaacagatcccacagtcgttgtcaaaa |
21705776 |
T |
|
| Q |
120 |
tctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttctgcagtgaacaatcctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| ||||| || || |||| || |||||| |||||||| |||||| ||| ||||| |
|
|
| T |
21705775 |
tctggacacatctcatatgctatcaggttgagtaaagtagaggctgcaaggttgttcacatagattacaggaatagtcagttttgcagtaaaccatcctg |
21705676 |
T |
|
| Q |
220 |
cagagaaatctatgtctcttggcct |
244 |
Q |
| |
|
||| |||||||| |||| ||||||| |
|
|
| T |
21705675 |
cagtgaaatctacgtctgttggcct |
21705651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 21765501 - 21765225
Alignment:
| Q |
20 |
caaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcattatgaaaa |
119 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||| |||||| || |||||||| || ||| || ||||||| ||||| |||| || | |||| |
|
|
| T |
21765501 |
caaaatcccttttgatctcaataccttcacatcttccggatggtcgatgagtgagtccatcaaagctacataagaacagatcccacagtcgttgtcaaaa |
21765402 |
T |
|
| Q |
120 |
tctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttctgcagtgaacaatcctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| ||||| || || |||| || |||||| |||||||| |||||| ||| ||||| |
|
|
| T |
21765401 |
tctggacacatctcatatgctatcaggttgagtaaattagaggctgcaaggttgttcacatagattacaggaatagtcagttttgcagtaaaccatcctg |
21765302 |
T |
|
| Q |
220 |
cagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatg |
296 |
Q |
| |
|
||| |||||||| |||| ||||||| || || ||||| ||||| |||||||||| |||||||||||| |||| |
|
|
| T |
21765301 |
cagtgaaatctacgtctgttggcctccttgttgcgcttgtcttaagtcttattcctactgctcttagatcttctatg |
21765225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 21803757 - 21803896
Alignment:
| Q |
20 |
caaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcattatgaaaa |
119 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||| ||| || || ||||||||||| ||| || ||||||||| | | ||||| || | |||| |
|
|
| T |
21803757 |
caaaatcccttttgatctcaatgccttcacatcttcaggatggtcaatgagagagtccatgaaagctacataagaacaaaactcatagtcgttcttaaaa |
21803856 |
T |
|
| Q |
120 |
tctggacacatctcatatgctatcaggttgaggaatgtag |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
21803857 |
tctggacacatctcatatgcaatcaggttaaggaaagtag |
21803896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 21624260 - 21624199
Alignment:
| Q |
268 |
ttattcctacatctcttagatcttgtatgttccggtatgtcatcatcttgaccttttcatct |
329 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
21624260 |
ttattcctccagttcttagattttgtatgttcctgtatgtcgtcatcttgacgttttcatct |
21624199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 26845 - 26569
Alignment:
| Q |
20 |
caaaatctcttttgatctcagtaccttcacatcttcaggattgtcgataagcgagtccatgaacgctgcaaaagaacaaatcccgtagtcattatgaaaa |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| || ||||||||||| ||||| || | |||| |
|
|
| T |
26845 |
caaaatcctttttgatctcagtaccttcacatcttcaggatggtcgatgagcgagtccatgagagctacataagaacaaatctgatagtcgttgtcaaaa |
26746 |
T |
|
| Q |
120 |
tctggacacatctcatatgctatcaggttgaggaatgtagtggctgatgagtcgtccacaacaatctcaggaagagtcagttctgcagtgaacaatcctt |
219 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||| ||||| ||| || ||| ||| ||||| |||||||| |||| ||| ||||| |
|
|
| T |
26745 |
tctggacacatctcatatgccaccaggttgaggaaaatagcggctgtaaagttgttcactgggatcctaggaatagtcagtttcgcagaaaaccatcctg |
26646 |
T |
|
| Q |
220 |
cagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatg |
296 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||| ||||| | |||||||||| |||||||||||| |||| |
|
|
| T |
26645 |
cagagaaatctatgtctgttggctttggtgtaaagcttgccttaagacttattcctactgctcttagatcttctatg |
26569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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