View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_54 (Length: 333)

Name: NF4445_low_54
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_54
NF4445_low_54
[»] chr6 (64 HSPs)
chr6 (34-316)||(26656071-26656353)
chr6 (34-316)||(26762042-26762324)
chr6 (40-316)||(27337894-27338170)
chr6 (40-316)||(27398634-27398910)
chr6 (39-316)||(25579801-25580081)
chr6 (34-316)||(26056008-26056293)
chr6 (34-316)||(26075978-26076263)
chr6 (34-316)||(26142947-26143232)
chr6 (34-316)||(25538622-25538907)
chr6 (34-316)||(26646561-26646843)
chr6 (34-316)||(26752529-26752811)
chr6 (158-316)||(26048927-26049085)
chr6 (158-316)||(26070096-26070254)
chr6 (34-316)||(25481824-25482109)
chr6 (82-316)||(26823922-26824156)
chr6 (183-316)||(26623058-26623191)
chr6 (183-316)||(26729036-26729169)
chr6 (196-316)||(28139623-28139743)
chr6 (249-316)||(27677652-27677719)
chr6 (249-316)||(27679028-27679095)
chr6 (249-315)||(27706440-27706506)
chr6 (249-316)||(27698532-27698599)
chr6 (213-316)||(27593022-27593125)
chr6 (249-316)||(27611040-27611107)
chr6 (249-316)||(27718417-27718484)
chr6 (225-308)||(28150027-28150110)
chr6 (249-316)||(26884245-26884314)
chr6 (183-316)||(26937176-26937309)
chr6 (229-316)||(27531215-27531302)
chr6 (249-316)||(27724883-27724950)
chr6 (247-316)||(27427642-27427711)
chr6 (133-316)||(28098291-28098474)
chr6 (187-316)||(2184980-2185109)
chr6 (257-314)||(28242888-28242945)
chr6 (252-316)||(26341975-26342039)
chr6 (268-316)||(26975134-26975182)
chr6 (258-314)||(28181198-28181254)
chr6 (258-314)||(28297760-28297816)
chr6 (258-314)||(28514257-28514313)
chr6 (269-316)||(2184370-2184417)
chr6 (266-316)||(25071741-25071791)
chr6 (249-314)||(27604743-27604808)
chr6 (258-314)||(28185450-28185506)
chr6 (258-314)||(28227034-28227090)
chr6 (249-316)||(26848742-26848809)
chr6 (37-104)||(26861907-26861974)
chr6 (63-118)||(28781419-28781474)
chr6 (63-118)||(28786558-28786613)
chr6 (63-118)||(28792679-28792734)
chr6 (183-242)||(29826183-29826242)
chr6 (258-316)||(27214499-27214557)
chr6 (258-316)||(27234671-27234729)
chr6 (266-316)||(31284370-31284420)
chr6 (266-314)||(26949745-26949793)
chr6 (270-314)||(28234648-28234692)
chr6 (63-169)||(27214649-27214755)
chr6 (63-169)||(27234473-27234579)
chr6 (212-293)||(26802547-26802628)
chr6 (263-316)||(27665169-27665222)
chr6 (212-293)||(28781244-28781325)
chr6 (84-188)||(25506857-25506961)
chr6 (264-316)||(26861698-26861750)
chr6 (253-293)||(28786383-28786423)
chr6 (253-293)||(28792504-28792544)
[»] chr4 (8 HSPs)
chr4 (34-316)||(18731314-18731596)
chr4 (63-316)||(18655316-18655569)
chr4 (34-316)||(18699210-18699492)
chr4 (34-316)||(18723895-18724177)
chr4 (34-316)||(18679377-18679659)
chr4 (247-316)||(18073844-18073913)
chr4 (259-316)||(17989088-17989145)
chr4 (178-317)||(5090921-5091060)
[»] chr8 (1 HSPs)
chr8 (40-316)||(29273599-29273875)
[»] chr1 (3 HSPs)
chr1 (34-316)||(268167-268449)
chr1 (34-316)||(28127489-28127771)
chr1 (34-316)||(28164173-28164454)
[»] scaffold0349 (2 HSPs)
scaffold0349 (249-315)||(3459-3525)
scaffold0349 (249-306)||(14394-14451)
[»] scaffold0277 (3 HSPs)
scaffold0277 (40-315)||(4500-4775)
scaffold0277 (54-118)||(13475-13539)
scaffold0277 (212-293)||(13633-13714)
[»] scaffold0003 (1 HSPs)
scaffold0003 (247-316)||(59652-59721)
[»] scaffold0038 (3 HSPs)
scaffold0038 (257-314)||(43050-43107)
scaffold0038 (258-314)||(34809-34865)
scaffold0038 (258-314)||(27532-27588)
[»] scaffold0019 (1 HSPs)
scaffold0019 (263-316)||(58334-58387)
[»] chr2 (2 HSPs)
chr2 (263-316)||(17993736-17993789)
chr2 (263-316)||(3279770-3279823)
[»] scaffold0419 (1 HSPs)
scaffold0419 (54-118)||(7805-7869)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26656353 - 26656071
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| |||||||||| |||||||||| |  || || | |||||    
T  26656353 caagatttaagtaaagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgt 26656254  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||  ||||||||     
T  26656253 tttccttgttattttggaacttcttttcatgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26656154  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26656153 aggcaaaaccgaacaaccctttgtcttatagcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26656071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26762324 - 26762042
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| |||||||||| |||||||||| |  || || | |||||    
T  26762324 caagatttaagtaaagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgt 26762225  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||  ||||||||     
T  26762224 tttccttgttattttggaacttcttttcatgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26762125  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26762124 aggcaaaaccgaacaaccctttgtcttatagcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26762042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 40 - 316
Target Start/End: Original strand, 27337894 - 27338170
Alignment:
Q  40 ttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttcct 139  Q
    |||||||||||||||||||||| |||| |||||| ||| || ||||||||||||||||| |||||| |||||||||  || || || | |||||||||||    
T  27337894 ttaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttcct 27337993  T
Q  140 tgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaa 239  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||  |||||||| ||||||    
T  27337994 tgttattttggaacttatcttcatgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaa 27338093  T
Q  240 aaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27338094 aaccgaacaaccccttgtcttgtagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagt 27338170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 40 - 316
Target Start/End: Original strand, 27398634 - 27398910
Alignment:
Q  40 ttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttcct 139  Q
    |||||||||||||||||||||| |||| |||||| ||| || ||||||||||||||||| |||||| |||||||||  || || || | |||||||||||    
T  27398634 ttaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttcct 27398733  T
Q  140 tgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaa 239  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||  |||||||| ||||||    
T  27398734 tgttattttggaacttatcttcatgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaa 27398833  T
Q  240 aaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27398834 aaccgaacaaccccttgtcttgtagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagt 27398910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 39 - 316
Target Start/End: Complemental strand, 25580081 - 25579801
Alignment:
Q  39 tttaagtaaagtggggtaccctt---cactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttt 135  Q
    ||||||||||||||||||||| |    |||| |||| ||||| || ||||||||||||||||| |||||  |||||||||||   ||||  | |||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  136 tccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaatag 235  Q
    | || ||||||||| ||| | ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||| ||||||| ||||||||  |    
T  25579981 ttctcgttattttgaaacctctcttcatgcttagtaagatactcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgg 25579882  T
Q  236 gcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| ||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25579881 gcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 25579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26056293 - 26056008
Alignment:
Q  34 caagatttaagtaaagtggggtacccttca---ctacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttca 130  Q
    ||||||||||||||||| |||||| | | |   ||| |||| ||||| || |||||||||||||| || |||||| |||||||||||   ||||  | ||    
T  26056293 caagatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctcca 26056194  T
Q  131 tgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaa 230  Q
    |||||| || |||||||||||||   |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  26056193 tgtttttctcgttattttggaacccctctttatgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaa 26056094  T
Q  231 aataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||  ||||| ||  | |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26056093 aacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26056008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26076263 - 26075978
Alignment:
Q  34 caagatttaagtaaagtggggtacccttca---ctacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttca 130  Q
    ||||||||||||||||| |||||| | | |   ||| |||| ||||| || |||||||||||||| || |||||| |||||||||||   ||||  | ||    
T  26076263 caagatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctcca 26076164  T
Q  131 tgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaa 230  Q
    |||||| || |||||||||||||   |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  26076163 tgtttttctcgttattttggaacccctctttatgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaa 26076064  T
Q  231 aataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||  ||||| ||  | |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26076063 aacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26075978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26143232 - 26142947
Alignment:
Q  34 caagatttaagtaaagtggggtaccctt---cactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttca 130  Q
    |||| ||||||||||||||||||||| |    |||| |||| ||||| || ||||||||||||||| | |||||  |||||||||||   ||||  | ||    
T  26143232 caagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctcca 26143133  T
Q  131 tgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaa 230  Q
    |||||| || ||||||||| ||| | ||||||||||||||||||||||||| |||| ||||| |||||| |||||||||| |||| ||||||| ||||||    
T  26143132 tgtttttctcgttattttgaaacctctcttcatgcttagtaagatgctcaccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaa 26143033  T
Q  231 aataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||  || || ||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26143032 aacgggaaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26142947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 25538907 - 25538622
Alignment:
Q  34 caagatttaagtaaagtggggtaccctt---cactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttca 130  Q
    |||||||||||||||||||||||||| |    |||| |||| ||||| || ||||||||||||||| | |||||  |||||||||||   ||||  | ||    
T  25538907 caagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctcca 25538808  T
Q  131 tgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaa 230  Q
    |||||| ||  |||||||| ||| | |||||||||||||||| |||||||| |||||||||| ||||||||||||  ||| |||| ||||||| ||||||    
T  25538807 tgtttttctcattattttgaaacctctcttcatgcttagtaaaatgctcaccataactcccactctgatgtcgtaactgagtaggttccacatcatagaa 25538708  T
Q  231 aataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||  ||||| ||  | |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  25538707 aacgggcaatactaagcaactctttgtcttgtagcagtgaatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagt 25538622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26646843 - 26646561
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    |||| |||||||||||||||||||||   |||| ||||||| || || ||||||||||||||||||||||||  |||||||||||  |||| || | |||    
T  26646843 caaggtttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgt 26646744  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||  | ||||| |||||||| ||||| |||| |||||||||| | ||||| ||||| ||| ||||||||||   ||||||||     
T  26646743 ttttcttgttattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaac 26646644  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
     ||||||||   || |||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||| |||||||    
T  26646643 gggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagt 26646561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 26752811 - 26752529
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    |||| |||||||||||||||||||||   |||| ||||||| || || ||||||||||||||||||||||||  |||||||||||  |||| || | |||    
T  26752811 caaggtttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgt 26752712  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||  | ||||| |||||||| ||||| |||| |||||||||| | ||||| ||||| ||| ||||||||||   ||||||||     
T  26752711 ttttcttgttattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaac 26752612  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
     ||||||||   || |||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||| |||||||    
T  26752611 gggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagt 26752529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 316
Target Start/End: Complemental strand, 26049085 - 26048927
Alignment:
Q  158 cttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgt 257  Q
    |||||||||||||||||||||||| |||||| ||| | ||||||||||||||| |||| ||||||| ||| ||||  ||||| ||  | |||| ||||||    
T  26049085 cttcatgcttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgt 26048986  T
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26048985 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26048927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 316
Target Start/End: Complemental strand, 26070254 - 26070096
Alignment:
Q  158 cttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgt 257  Q
    |||||||||||||||||||||||| |||||| ||| | ||||||||||||||| |||| ||||||| ||| ||||  ||||| ||  | |||| ||||||    
T  26070254 cttcatgcttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgt 26070155  T
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26070154 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26070096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 25482109 - 25481824
Alignment:
Q  34 caagatttaagtaaagtggggtacccttca---ctacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttca 130  Q
    |||| ||||||||||||||||||| | | |   ||| |||| ||||| || || ||||||||||| || |||||| |||||||||||   ||||  | ||    
T  25482109 caagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctcca 25482010  T
Q  131 tgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaa 230  Q
    |||||| || |||||||||||||   |||||||||||||| ||||  |||| |||||| |  || ||| |||| |  | | |||||||||||  ||||||    
T  25482009 tgtttttctcgttattttggaacccctcttcatgcttagtcagatattcaccataactacatgtatgacgtcgaacatcagtaggatccacaccatagaa 25481910  T
Q  231 aataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||  || || ||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25481909 aacgggtaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 25481824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 26824156 - 26823922
Alignment:
Q  82 aagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcac 181  Q
    |||| |||||||||  ||||||||||||||||||||   ||| | | |||||||||||||||||||  |||| | | |||||||||||| |||||   |     
T  26824156 aagtcagcagcttgtttcagagccttcttccattgaagcaatttctccatgttttccttgttatttccgaacctcttttcatgcttagtgagatgtatag 26824057  T
Q  182 aataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggac 281  Q
     ||||||||||  |||||||||||||| |  ||||||||||  |||||||| |||||||||    |  ||||||  |||||||  | |||||||||||||    
T  26824056 cataactcccacgctgatgtcgtatgtcaccaggatccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggac 26823957  T
Q  282 aagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||| ||||||||||| |||||||    
T  26823956 aagttcgtccaaacaaaatgaagaagaggcatagt 26823922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 26623191 - 26623058
Alignment:
Q  183 ataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggaca 282  Q
    |||||||||||| ||||| ||||||||| ||||||||||   |||||| |  ||||||||   || ||||||||| ||||||||||||||||||||||||    
T  26623191 ataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggaca 26623092  T
Q  283 agttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||| |||||||| ||||||||| |||||||||    
T  26623091 agttcatccaaacaaaatgaagaatatgcatagt 26623058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 26729169 - 26729036
Alignment:
Q  183 ataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggaca 282  Q
    |||||||||||| ||||| ||||||||| ||||||||||   |||||| |  ||||||||   || ||||||||| ||||||||||||||||||||||||    
T  26729169 ataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggaca 26729070  T
Q  283 agttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||| |||||||| ||||||||| |||||||||    
T  26729069 agttcatccaaacaaaatgaagaatatgcatagt 26729036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 28139743 - 28139623
Alignment:
Q  196 tgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 295  Q
    |||||||| ||||||  ||||||||||  |||||||| |||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||||| |    
T  28139743 tgatgtcgaatgtgagaaggatccacaccatagaaaacaggcaaaaccaaacatccctttgtgttgaagcagtcaatgatgtggacaagttcgtccaagc 28139644  T
Q  296 ataatgaagaagatgcatagt 316  Q
    | || |||||||| |||||||    
T  28139643 aaaacgaagaagaggcatagt 28139623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27677652 - 27677719
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27677652 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 27677719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 27679095 - 27679028
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27679095 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 27679028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 27706440 - 27706506
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatag 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  27706440 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatag 27706506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27698532 - 27698599
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  27698532 accctttgtctcgtagcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 27698599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 27593022 - 27593125
Alignment:
Q  213 aggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgca 312  Q
    ||||||||||  | |||||| ||||||||| |  | |||||||||||||||||| |||||||||||| |||||||||||||||| || |||||||| |||    
T  27593022 aggatccacaccaaagaaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatgatgtggtcaagttcgtccaaacaaaacgaagaagaggca 27593121  T
Q  313 tagt 316  Q
    ||||    
T  27593122 tagt 27593125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27611040 - 27611107
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||    
T  27611040 accctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27611107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27718417 - 27718484
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||    
T  27718417 accctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27718484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 28150110 - 28150027
Alignment:
Q  225 atagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaaga 308  Q
    |||||||||||||| |||  | |||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  28150110 atagaaaataggcagaactaagcaaccctttgccttgaagcagtgaataatgtggacaagttcgtccaaacaaaatgaagaaga 28150027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 26884314 - 26884245
Alignment:
Q  249 accctttgtcttgtagcagtgaatga--tgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  26884314 accctttgtctcgtagcagtgaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagt 26884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 26937309 - 26937176
Alignment:
Q  183 ataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggaca 282  Q
    |||||||||||| || ||||| | ||||  ||||||||| | |||||||||||||||||    |  ||| ||||||||| |||||| || ||||||||||    
T  26937309 ataactcccagtttggtgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacgatgtggaca 26937210  T
Q  283 agttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||| ||||||||||  |||||||    
T  26937209 agttcgtccaaacaaaatgaagaagtggcatagt 26937176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 27531215 - 27531302
Alignment:
Q  229 aaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| |||||||||   |||||||||||| | |||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  27531215 aaaacaggcaaaacaagacaaccctttgtatcgtagcaatgagtgatgtgaacaagttcgtccaaacaaaatgaagaagatgcatagt 27531302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27724883 - 27724950
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| | |||||||    
T  27724883 accctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaataggcatagt 27724950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 27427642 - 27427711
Alignment:
Q  247 caaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  27427642 caacccttggttttgtagcagtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagt 27427711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 316
Target Start/End: Original strand, 28098291 - 28098474
Alignment:
Q  133 ttttccttgttattttggaacttgtcttcatgcttagtaagatgct-cacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaa 231  Q
    ||||| ||||||||||||||| | |||||||||||||  | ||||| ||| ||||||||| ||||||||||| | ||||  ||| ||||| | | | |||    
T  28098291 ttttctttgttattttggaacctctcttcatgcttagcta-atgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaa 28098389  T
Q  232 ataggcaaaaccgaacaaccctttgtctt-gtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||| |||||  | ||||||||| |||| ||| | ||||||||||||||||||||| |||||||| ||  ||||||| |||||||    
T  28098390 ataggaaaaacgaagcaacccttt-tcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagt 28098474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 2185109 - 2184980
Alignment:
Q  187 ctcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagtt 286  Q
    ||||||||||||| |||||  ||||||||||| |  | | ||||||  |||| |||||  |  ||||||| |||| ||||  ||||||| ||||||||||    
T  2185109 ctcccagtctgatttcgtacatgattaggatctatgttacagaaaactggcagaaccgggcgtccctttgacttggagcaacgaatgatatggacaagtt 2185010  T
Q  287 cgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||| ||||||||||| |||||||    
T  2185009 cgtccaaacaaaatgaagaagaagcatagt 2184980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 28242945 - 28242888
Alignment:
Q  257 tcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  28242945 tcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28242888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 26341975 - 26342039
Alignment:
Q  252 ctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||| || |||||||| |||||||    
T  26341975 ctttgccttgaagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagt 26342039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 26975182 - 26975134
Alignment:
Q  268 tgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  26975182 tgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 26975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 28181254 - 28181198
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  28181254 cttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28181198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 28297760 - 28297816
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  28297760 cttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 28514313 - 28514257
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  28514313 cttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 2184417 - 2184370
Alignment:
Q  269 gaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2184417 gaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 2184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 25071791 - 25071741
Alignment:
Q  266 agtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  25071791 agtgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 25071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 27604743 - 27604808
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||||||||| ||||||| ||||||||||| |||||||| |||||||| || |||||||| |||||    
T  27604743 accctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaaggaagaagaggcata 27604808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 28185506 - 28185450
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| |||||| |||||||||||||||||||||||| || ||||||||||| |||||    
T  28185506 cttgaagcagttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 28227090 - 28227034
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||    
T  28227090 cttgaagcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28227034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 26848809 - 26848742
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||  |||| |||| ||||||||||||||||||||||||||||| || |||||||  |||||||    
T  26848809 acccttttccttggagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagt 26848742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 26861974 - 26861907
Alignment:
Q  37 gatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagc 104  Q
    |||||| || |||||||||||||   |||| ||||||||||||| ||||||||||||||| |||||||    
T  26861974 gatttatgttaagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagc 26861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 28781474 - 28781419
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgat 118  Q
    |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  28781474 actagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgat 28781419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 28786613 - 28786558
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgat 118  Q
    |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  28786613 actagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgat 28786558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 28792734 - 28792679
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgat 118  Q
    |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  28792734 actagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgat 28792679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 29826242 - 29826183
Alignment:
Q  183 ataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaac 242  Q
    ||||||||||||||||||||| |  |||  ||||||||||| ||||||||||||||||||    
T  29826242 ataactcccagtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaac 29826183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 27214557 - 27214499
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| |||| ||| ||||||||||||||||||||||||| ||||||||||  |||||||    
T  27214557 cttggagcaatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagt 27214499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 27234671 - 27234729
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| |||| ||| ||||||||||||||||||||||||| ||||||||||  |||||||    
T  27234671 cttggagcaatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagt 27234729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 31284420 - 31284370
Alignment:
Q  266 agtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||||||| || || ||||| |||||||    
T  31284420 agtgaatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagt 31284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 26949793 - 26949745
Alignment:
Q  266 agtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  26949793 agtgaatgatatggacaagttcgtctaaacaaaatgaagaagaagcata 26949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 28234692 - 28234648
Alignment:
Q  270 aatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||||||||||||||||||||||| || ||||||||||| |||||    
T  28234692 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28234648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 27214755 - 27214649
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttccttgttattttggaacttgtcttca 162  Q
    |||| |||| ||||| || ||||||||||||||| | |||||  |||||||||  |  || |  | ||||||||||||||||||||| ||| | ||||||    
T  27214755 actataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttca 27214656  T
Q  163 tgcttag 169  Q
    |||||||    
T  27214655 tgcttag 27214649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 27234473 - 27234579
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttccttgttattttggaacttgtcttca 162  Q
    |||| |||| ||||| || ||||||||||||||| | |||||  |||||||||  |  || |  | ||||||||||||||||||||| ||| | ||||||    
T  27234473 actataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttca 27234572  T
Q  163 tgcttag 169  Q
    |||||||    
T  27234573 tgcttag 27234579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 26802628 - 26802547
Alignment:
Q  212 taggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 293  Q
    |||||||||||  | ||||||||||||| ||    | |||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  26802628 taggatccacaccaaagaaaataggcaagacgaggcgaccctttgtcttatagcaatgaataatgtgaacaagttcgtccaa 26802547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 27665169 - 27665222
Alignment:
Q  263 agcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| |||||||||||||||||||| || ||||| ||||||||||  |||||||    
T  27665169 agcaatgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagt 27665222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 28781325 - 28781244
Alignment:
Q  212 taggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 293  Q
    |||||||||||  | |||||| |||||||||    | ||| |||||||||||||| ||||| ||||| ||||||||||||||    
T  28781325 taggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaa 28781244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 25506857 - 25506961
Alignment:
Q  84 gttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaa 183  Q
    |||||||| ||| || |||||  | ||||||||||   |||| | |||||||| ||| |||||||| ||||| |||||||||||||| ||||  |||| |    
T  25506857 gttagcagattgtgttagagctattttccattgatgcgatctctccatgtttttcttattattttgaaacttctcttcatgcttagtcagatcttcacca 25506956  T
Q  184 taact 188  Q
    |||||    
T  25506957 taact 25506961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 26861750 - 26861698
Alignment:
Q  264 gcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||| |||||| ||||||||||| |||||||| ||||| ||||| |||||||    
T  26861750 gcagttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagt 26861698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 28786423 - 28786383
Alignment:
Q  253 tttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 293  Q
    |||||||||||||| ||||| ||||| ||||||||||||||    
T  28786423 tttgtcttgtagcaatgaataatgtgaacaagttcgtccaa 28786383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 28792544 - 28792504
Alignment:
Q  253 tttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 293  Q
    |||||||||||||| ||||| ||||| ||||||||||||||    
T  28792544 tttgtcttgtagcaatgaataatgtgaacaagttcgtccaa 28792504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 18731314 - 18731596
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||| |||||||||| || |||||| | |||| |||||||||| || ||||||||||||| ||||||||||  |||||||||||  || |  | |||||    
T  18731314 caagaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgt 18731413  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||  | | ||  |||||||| ||||| |||| |||||||||| | ||||||||||||||| ||||||||||   ||||||||     
T  18731414 ttttcttgttattttggaaactctttttgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgactaggatccacgccatagaaaac 18731513  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||   || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  18731514 aggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 18731596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 63 - 316
Target Start/End: Original strand, 18655316 - 18655569
Alignment:
Q  63 actacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttccttgttattttggaacttgtcttca 162  Q
    |||| |||||||||| || ||||||||||||| ||||||||||  |||||||||||  || |  | |||||||| ||||||||||||||| || | |       
T  18655316 actagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttggaaattctttctg 18655415  T
Q  163 tgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgt 262  Q
    |||||||| ||||| |||| |||||| ||||| ||||||||||||||| ||||||||||   |||||||| ||| |||||   || ||||||||||||||    
T  18655416 tgcttagtgagatgttcaccataacttccagtttgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgt 18655515  T
Q  263 agcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  18655516 agcagtgaatgatgcggacaagttcgtccaaacaaaatgaagaagaggcatagt 18655569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 18699210 - 18699492
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||| |||||||||| || ||||||   |||| |||||||||| || ||||||||||||| |||||||||   |||||||||||  || |  | |||||    
T  18699210 caagaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgt 18699309  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||  | | | | |||||||| ||||| |||| |||||||||| | ||||||||||||||| ||||||| ||   ||||||||     
T  18699310 ttttcttgttattttggaaactctttccgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatctacgccatagaaaac 18699409  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||   || ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  18699410 aggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagt 18699492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 18723895 - 18724177
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||| |||||||||| || ||||||   |||| |||||||||| || ||||||||||||| ||||||||||  |||||||||||  || |  | |||||    
T  18723895 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgt 18723994  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||  |   ||  |||||||| ||||| |||| |||||||||| | || |||||||||||| ||||||||||   ||||||||     
T  18723995 ttttcttgttattttggaaactcattttgtgcttagtgagatgttcaccataactcccactttggtgtcgtatgtgactaggatccacgccatagaaaac 18724094  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||   || ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||    
T  18724095 aggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgttcaaacaaaatgaagaagaggcatagt 18724177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 18679377 - 18679659
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||| |||||||||| || ||||||   |||| |||||||||| || ||||||||||||| |||||||||   |||||||||||  || |  | |||||    
T  18679377 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgt 18679476  T
Q  134 tttccttgttattttggaacttgtcttca-tgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaa 232  Q
    |||  ||||||||||||||  | | |||| || ||||| ||||| |||| |||||| ||| | ||||||| ||||||| ||||||||||   ||||||||    
T  18679477 ttttattgttattttggaaactct-ttcagtgattagtgagatgttcaccataactaccactttgatgtcatatgtgagtaggatccacgacatagaaaa 18679575  T
Q  233 taggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
     |||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  18679576 caggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 18679659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 18073913 - 18073844
Alignment:
Q  247 caaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  18073913 caacccttggttttgtagcagtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagt 18073844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 17989088 - 17989145
Alignment:
Q  259 ttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  17989088 ttgtagcagtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagt 17989145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 5090921 - 5091060
Alignment:
Q  178 tcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgt 277  Q
    |||| |||||| |||||||||| ||| |  |||  ||| ||||||  |||||||||||||||||||   ||||| |||  |||| |||||||||| || |    
T  5090921 tcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattttccttggagcagtgaataatat 5091020  T
Q  278 ggacaagttcgtccaaacataatgaagaagatgcatagtg 317  Q
    |||||||||| || ||||| || |||||||| ||||||||    
T  5091021 ggacaagttcatctaaacaaaacgaagaagaagcatagtg 5091060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 316
Target Start/End: Original strand, 29273599 - 29273875
Alignment:
Q  40 ttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttcct 139  Q
    |||||||||| |  |||||| | |||| |||||||||| || ||||||| ||||||||||||||||  |||||||||||  || |  | |||||||| ||    
T  29273599 ttaagtaaagagcagtacccatgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgatccatgtttttct 29273698  T
Q  140 tgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggcaa 239  Q
    || ||||||||||  | ||||| | |||||| ||||| |||| |||||||||| | ||||||||||||||| ||||||||||   |||||| | ||||||    
T  29273699 tgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacaggcaa 29273798  T
Q  240 aaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29273799 aatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 29273875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 268167 - 268449
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||| |||||||||| |  ||||||   |||| |||||||||| || ||||||| ||||||||||||||||  |||||||||||  || |  | |||||    
T  268167 caagaattaagtaaagagcagtacccacgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgt 268266  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||| ||||||||||  | ||||| |||||||| ||||| |||| |||||||||| | ||||||||||||||| ||||||||||   |||||| |     
T  268267 ttttcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagac 268366  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
     |||||||    || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  268367 gggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 268449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 28127489 - 28127771
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    ||||||||||||| ||| |||||||||  |||| |||||||||| || ||||||||||||||||| |||||  |||||||||| |  ||||  | |||||    
T  28127489 caagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgt 28127588  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||| | ||| ||||||||| ||| |  |||| ||||||||| || |||| ||| |  | | ||||||||||   | ||||||     
T  28127589 ttttcttgttattttggaacctctctccatgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgccaaagaaaac 28127688  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||    | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  28127689 aggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtgcacaagttcgtccaaacaaaatgaagaagaggcatagt 28127771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 28164173 - 28164454
Alignment:
Q  34 caagatttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgt 133  Q
    |||||||||||||  ||  ||||||||  |||| |||||||||| || ||||||||||||||||| |||||  |||||||||| |  ||||  | |||||    
T  28164173 caagatttaagtattgtaaggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgt 28164272  T
Q  134 tttccttgttattttggaacttgtcttcatgcttagtaagatgctcacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaat 233  Q
    ||| |||||||||||||||| | ||  |||||||||||||||  |  | ||||||||| || |||||||| |  | | ||||||||||   | ||||||     
T  28164273 ttttcttgttattttggaacctctcaccatgcttagtaagatctttgccataactccctgtatgatgtcgcacatcagtaggatccacgcca-agaaaac 28164371  T
Q  234 aggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  28164372 aggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 28164454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 3459 - 3525
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatag 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  3459 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatag 3525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 14394 - 14451
Alignment:
Q  249 accctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaa 306  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  14394 accctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaa 14451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 4500 - 4775
Alignment:
Q  40 ttaagtaaagtggggtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgatttaatcttttcatgttttcct 139  Q
    |||||||||  || |||||| | |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||  || || | |||||| | ||    
T  4500 ttaagtaaataggcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattct 4599  T
Q  140 tgttattttggaacttgtcttcatgcttagtaagatgct-cacaataactcccagtctgatgtcgtatgtgattaggatccacatgatagaaaataggca 238  Q
    | | |||||| ||| | | |||||||| ||  | ||||| ||| |||||| ||  || ||||||| | || | |||| |||||     |||||| |||||    
T  4600 tatcattttgaaacctcttttcatgctcagcca-atgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaaacaggca 4698  T
Q  239 aaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatag 315  Q
    ||||    | |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| | ||||||    
T  4699 aaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaaaaggcatag 4775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 13475 - 13539
Alignment:
Q  54 gtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgat 118  Q
    |||||| | |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  13475 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgat 13539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 13633 - 13714
Alignment:
Q  212 taggatccacatgatagaaaataggcaaaaccgaacaaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 293  Q
    |||||||||||  | |||||| |||||||||    | ||| |||||||||||||| ||||| ||||| ||||||||||||||    
T  13633 taggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaa 13714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 59721 - 59652
Alignment:
Q  247 caaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  59721 caacccttggttttgtagcagtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagt 59652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 43107 - 43050
Alignment:
Q  257 tcttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  43107 tcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 43050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 34865 - 34809
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  34865 cttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 34809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 27588 - 27532
Alignment:
Q  258 cttgtagcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcata 314  Q
    |||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||    
T  27588 cttgaagcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 27532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 58334 - 58387
Alignment:
Q  263 agcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  58334 agcagtgaatgatgtggacaagttcgttcaagcaaaatgaagaagaagcatagt 58387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 17993736 - 17993789
Alignment:
Q  263 agcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  17993736 agcattgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 17993789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 3279823 - 3279770
Alignment:
Q  263 agcagtgaatgatgtggacaagttcgtccaaacataatgaagaagatgcatagt 316  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||| |||||||    
T  3279823 agcaatgaatgatgtggacaagttcgtccaaacaaaatatagaagaagcatagt 3279770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 7869 - 7805
Alignment:
Q  54 gtacccttcactacaatggtagcctgaaaagttagcagcttgggtcagagccttcttccattgat 118  Q
    |||||| | |||| |||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  7869 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgat 7805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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