View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_56 (Length: 325)
Name: NF4445_low_56
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 26655696 - 26655994
Alignment:
| Q |
17 |
acattttgatttcatcgcagtttcggcgattccacgctccgatttctagattcgcttttgatctccaaagacgtgaaatcattagtcgaaattcgatcca |
116 |
Q |
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| T |
26655696 |
acattttgatttcatcgcagtttcggcgattccacgctccgatttctagattcgcttttgatctccaaagacgtgaaatcgttagtcgaaattcgatcca |
26655795 |
T |
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| Q |
117 |
gtttgacgcaactcctcaaatccgaatcactttctatcattcattccatcaccgcagaaacaattcacgataagcttctcgttctcgatttcttcgtctg |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26655796 |
gtttgacgcaactcctcaaatccgaatcactatctatcattcattccatcaccgcagaaacaattcacgataagcttctcgttctcgatttcttcgtccg |
26655895 |
T |
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| Q |
217 |
cgctttcgctctcctcggagatctagaggtaattctaatttcacattcttcaatagacatcgaaacatttcaatatcctaattcatttttctgcctttg |
315 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26655896 |
cgctttcgctctcgtcggagatctagaggtacttctaatttcacattcttcaatagacatcgaaacatttcaatatcctaattcatttttctgcttttg |
26655994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 26642256 - 26642486
Alignment:
| Q |
17 |
acattttgatttcatcgcagtttcggcgattccacgctccgatttctagattcgcttttgatctccaaagacgtgaaatcattagtcgaaattcgatcca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||| ||||||||||||| |
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| T |
26642256 |
acattttgatttcatcgcagtttcggcgattccacgctccgatttctagattcgctcttggtttccaaagacgtgaaatcgttagttgaaattcgatcca |
26642355 |
T |
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| Q |
117 |
gtttgacgcaactcctcaaatccgaatcactttctatcattcattccatcaccgcagaaacaattcacgataagcttctcgttctcgatttcttcgtctg |
216 |
Q |
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| |||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||| | | ||| ||||||| |||||||||||||||||||||| |
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| T |
26642356 |
gcttgaatcaactcctcaaatctgaatctctttccatcattcaatccatcactgcagaatccgtccacaataagctcatcgttctcgatttcttcgtctg |
26642455 |
T |
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| Q |
217 |
cgctttcgctctcctcggagatctagaggta |
247 |
Q |
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|||||||||| | | ||||||||||||||| |
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| T |
26642456 |
cgctttcgctattgttggagatctagaggta |
26642486 |
T |
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