View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_57 (Length: 325)
Name: NF4445_low_57
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 42163890 - 42163611
Alignment:
| Q |
34 |
aaaacaaaacaataacaagatttttgcttcattaagtcatttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaaca |
133 |
Q |
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| T |
42163890 |
aaaaaaaaacaataacaagatttttgcttcattaagtcatttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaaca |
42163791 |
T |
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| Q |
134 |
aatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtg |
233 |
Q |
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| T |
42163790 |
aatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtg |
42163691 |
T |
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| Q |
234 |
ctgtatctggtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcataccta |
313 |
Q |
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| T |
42163690 |
ctgtatctggtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcataccta |
42163611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 5480776 - 5480656
Alignment:
| Q |
114 |
aggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatgg |
213 |
Q |
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| T |
5480776 |
aggtgagggaattggaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatgg |
5480677 |
T |
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| Q |
214 |
tacaaagagaagatgtggtgc |
234 |
Q |
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| T |
5480676 |
accaaaaagacgatgcggtgc |
5480656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 143 - 312
Target Start/End: Original strand, 47170573 - 47170742
Alignment:
| Q |
143 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctg |
242 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
47170573 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
47170672 |
T |
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| Q |
243 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacct |
312 |
Q |
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| T |
47170673 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggaaaaatcccctcattcctacct |
47170742 |
T |
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