View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_59 (Length: 320)

Name: NF4445_low_59
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_59
NF4445_low_59
[»] chr4 (32 HSPs)
chr4 (77-249)||(32543585-32543757)
chr4 (85-249)||(6128956-6129120)
chr4 (78-237)||(19692840-19692999)
chr4 (78-237)||(19703425-19703584)
chr4 (77-249)||(22321267-22321439)
chr4 (78-249)||(12071666-12071837)
chr4 (85-249)||(40122494-40122657)
chr4 (75-249)||(24706244-24706419)
chr4 (77-249)||(14261149-14261322)
chr4 (77-249)||(21310530-21310699)
chr4 (77-249)||(25704756-25704929)
chr4 (77-249)||(44568942-44569115)
chr4 (88-249)||(50767969-50768129)
chr4 (85-249)||(20249021-20249185)
chr4 (80-249)||(21661537-21661707)
chr4 (80-249)||(21670301-21670471)
chr4 (88-236)||(18507276-18507423)
chr4 (155-244)||(20714426-20714515)
chr4 (79-249)||(21064865-21065037)
chr4 (148-249)||(34324653-34324754)
chr4 (78-172)||(50839031-50839125)
chr4 (143-222)||(26676645-26676724)
chr4 (95-249)||(31892339-31892492)
chr4 (88-200)||(48652379-48652491)
chr4 (119-249)||(51777723-51777839)
chr4 (151-202)||(53219159-53219210)
chr4 (87-171)||(20714329-20714413)
chr4 (85-152)||(26676577-26676645)
chr4 (100-192)||(42629322-42629414)
chr4 (176-242)||(11034423-11034489)
chr4 (120-236)||(52057553-52057670)
chr4 (131-203)||(38617852-38617924)
[»] chr8 (30 HSPs)
chr8 (77-249)||(35866719-35866891)
chr8 (77-249)||(3585556-3585729)
chr8 (77-249)||(11646324-11646497)
chr8 (77-249)||(30999523-30999695)
chr8 (77-249)||(36068185-36068358)
chr8 (78-249)||(7147018-7147190)
chr8 (78-249)||(40058303-40058475)
chr8 (78-249)||(40918731-40918903)
chr8 (85-236)||(26628823-26628974)
chr8 (78-237)||(28568036-28568195)
chr8 (78-237)||(28575629-28575788)
chr8 (77-249)||(43275398-43275571)
chr8 (85-249)||(27035101-27035265)
chr8 (78-249)||(37345676-37345848)
chr8 (77-249)||(2539929-2540103)
chr8 (77-249)||(11174222-11174395)
chr8 (77-249)||(28562527-28562699)
chr8 (89-222)||(27563878-27564009)
chr8 (114-249)||(13880991-13881126)
chr8 (113-248)||(20546328-20546460)
chr8 (113-249)||(37510371-37510512)
chr8 (78-233)||(45400770-45400927)
chr8 (91-192)||(10180881-10180982)
chr8 (154-320)||(28326734-28326898)
chr8 (94-244)||(30906705-30906855)
chr8 (85-237)||(39151522-39151665)
chr8 (151-243)||(12489737-12489830)
chr8 (209-249)||(10180989-10181029)
chr8 (137-217)||(35052092-35052172)
chr8 (122-237)||(43553063-43553179)
[»] chr7 (23 HSPs)
chr7 (78-249)||(16662199-16662370)
chr7 (78-249)||(17636559-17636730)
chr7 (77-249)||(27813916-27814089)
chr7 (85-249)||(36453131-36453296)
chr7 (76-249)||(25614351-25614525)
chr7 (78-249)||(10981613-10981785)
chr7 (77-249)||(47110554-47110728)
chr7 (113-249)||(3091622-3091755)
chr7 (77-249)||(40349065-40349239)
chr7 (75-249)||(16360487-16360656)
chr7 (119-227)||(27941025-27941131)
chr7 (136-242)||(3498813-3498919)
chr7 (113-220)||(24456800-24456907)
chr7 (123-220)||(8380073-8380170)
chr7 (113-249)||(7743433-7743569)
chr7 (119-236)||(35112450-35112568)
chr7 (155-217)||(19570313-19570375)
chr7 (120-186)||(37983300-37983366)
chr7 (154-203)||(27021650-27021699)
chr7 (121-166)||(31399106-31399151)
chr7 (119-167)||(28200488-28200536)
chr7 (213-249)||(37983257-37983293)
chr7 (151-249)||(41480579-41480679)
[»] chr3 (38 HSPs)
chr3 (78-249)||(18355868-18356039)
chr3 (78-249)||(13364948-13365120)
chr3 (78-249)||(46694110-46694282)
chr3 (77-249)||(19241667-19241840)
chr3 (76-249)||(36881385-36881559)
chr3 (85-249)||(23087938-23088103)
chr3 (77-249)||(48436332-48436502)
chr3 (89-234)||(54086673-54086818)
chr3 (78-249)||(3383181-3383353)
chr3 (78-249)||(198960-199132)
chr3 (87-249)||(24064329-24064488)
chr3 (77-249)||(29375243-29375410)
chr3 (85-249)||(6901669-6901830)
chr3 (133-249)||(43750242-43750358)
chr3 (78-220)||(32834989-32835131)
chr3 (119-227)||(37293539-37293644)
chr3 (127-249)||(52009099-52009221)
chr3 (119-244)||(53559652-53559777)
chr3 (77-231)||(13703338-13703490)
chr3 (121-237)||(52805070-52805186)
chr3 (109-243)||(48963232-48963365)
chr3 (139-242)||(37781049-37781152)
chr3 (109-231)||(31873894-31874015)
chr3 (85-187)||(48820508-48820610)
chr3 (85-163)||(26783661-26783739)
chr3 (142-249)||(19896994-19897099)
chr3 (121-239)||(1455194-1455310)
chr3 (139-249)||(27707050-27707160)
chr3 (154-235)||(46188886-46188967)
chr3 (121-226)||(48152008-48152114)
chr3 (121-227)||(48214090-48214197)
chr3 (154-239)||(40228280-40228363)
chr3 (120-217)||(32980662-32980759)
chr3 (137-236)||(43159867-43159967)
chr3 (129-240)||(44522584-44522693)
chr3 (137-237)||(43775496-43775597)
chr3 (217-249)||(26105136-26105168)
chr3 (142-237)||(55141582-55141678)
[»] chr6 (22 HSPs)
chr6 (75-249)||(13757313-13757487)
chr6 (77-249)||(17942550-17942721)
chr6 (77-249)||(1605684-1605856)
chr6 (77-247)||(15064694-15064864)
chr6 (77-249)||(8626587-8626760)
chr6 (77-246)||(26860873-26861042)
chr6 (78-249)||(29260297-29260469)
chr6 (78-249)||(4129532-4129703)
chr6 (78-249)||(7761404-7761577)
chr6 (77-249)||(8235729-8235903)
chr6 (77-244)||(20398237-20398406)
chr6 (78-249)||(31559738-31559908)
chr6 (120-246)||(3798211-3798334)
chr6 (136-249)||(30734541-30734655)
chr6 (152-249)||(14287093-14287190)
chr6 (87-186)||(1814762-1814861)
chr6 (168-249)||(11370576-11370657)
chr6 (131-202)||(847829-847900)
chr6 (139-237)||(3621631-3621730)
chr6 (131-217)||(26470845-26470931)
chr6 (193-243)||(30235423-30235473)
chr6 (100-236)||(31244851-31244988)
[»] chr5 (29 HSPs)
chr5 (78-249)||(25683229-25683400)
chr5 (78-249)||(40886610-40886782)
chr5 (77-249)||(12806852-12807025)
chr5 (109-316)||(30402993-30403202)
chr5 (78-249)||(36561099-36561271)
chr5 (85-249)||(39070988-39071152)
chr5 (86-249)||(734347-734510)
chr5 (112-249)||(16054217-16054354)
chr5 (77-249)||(30720491-30720664)
chr5 (77-249)||(10285057-10285229)
chr5 (75-249)||(25773754-25773929)
chr5 (77-249)||(11319664-11319834)
chr5 (77-249)||(37900622-37900796)
chr5 (76-235)||(1056623-1056778)
chr5 (77-242)||(23097723-23097887)
chr5 (141-249)||(7277486-7277594)
chr5 (95-198)||(11795300-11795403)
chr5 (131-242)||(11797657-11797770)
chr5 (78-188)||(26168075-26168185)
chr5 (113-249)||(16983365-16983499)
chr5 (119-249)||(15629240-15629372)
chr5 (121-248)||(21638878-21639003)
chr5 (139-222)||(19831653-19831736)
chr5 (78-186)||(1055773-1055885)
chr5 (120-217)||(4985293-4985390)
chr5 (194-237)||(1056401-1056442)
chr5 (151-191)||(12305688-12305728)
chr5 (101-236)||(12723057-12723193)
chr5 (137-236)||(12784540-12784640)
[»] chr1 (37 HSPs)
chr1 (77-249)||(51064753-51064925)
chr1 (78-249)||(31003787-31003958)
chr1 (77-249)||(40783656-40783829)
chr1 (77-249)||(23526345-23526517)
chr1 (77-249)||(284438-284611)
chr1 (78-249)||(23045279-23045451)
chr1 (77-249)||(24771905-24772077)
chr1 (85-222)||(25929231-25929368)
chr1 (85-249)||(24876667-24876831)
chr1 (78-249)||(47037852-47038024)
chr1 (77-231)||(23166850-23167004)
chr1 (78-243)||(27143014-27143177)
chr1 (78-249)||(321731-321903)
chr1 (77-249)||(33082850-33083022)
chr1 (77-249)||(1837826-1838001)
chr1 (113-222)||(40261320-40261429)
chr1 (78-242)||(18396807-18396971)
chr1 (78-236)||(34458724-34458882)
chr1 (85-207)||(14925612-14925732)
chr1 (83-241)||(31061461-31061618)
chr1 (85-249)||(46771742-46771908)
chr1 (147-249)||(3657182-3657282)
chr1 (150-249)||(52478071-52478170)
chr1 (119-222)||(40052505-40052606)
chr1 (77-230)||(40562285-40562437)
chr1 (85-213)||(27210962-27211090)
chr1 (114-169)||(14350510-14350565)
chr1 (261-317)||(25929150-25929206)
chr1 (162-249)||(37926913-37927000)
chr1 (120-216)||(19455518-19455614)
chr1 (119-237)||(32347999-32348118)
chr1 (195-249)||(52037242-52037294)
chr1 (114-172)||(1749457-1749515)
chr1 (266-316)||(40261462-40261512)
chr1 (151-217)||(49756684-49756750)
chr1 (137-237)||(45226674-45226775)
chr1 (151-203)||(37835445-37835497)
[»] scaffold0025 (1 HSPs)
scaffold0025 (112-249)||(65199-65335)
[»] chr2 (28 HSPs)
chr2 (77-249)||(22388137-22388307)
chr2 (77-249)||(23366894-23367067)
chr2 (85-249)||(3519013-3519177)
chr2 (77-249)||(1102608-1102779)
chr2 (77-249)||(39938275-39938448)
chr2 (90-246)||(34242083-34242239)
chr2 (78-249)||(39561895-39562059)
chr2 (78-249)||(12969740-12969911)
chr2 (78-249)||(1646392-1646564)
chr2 (119-249)||(19976436-19976564)
chr2 (112-237)||(1002765-1002890)
chr2 (78-193)||(40756911-40757026)
chr2 (78-249)||(37673743-37673909)
chr2 (112-237)||(14779894-14780018)
chr2 (78-236)||(4917880-4918038)
chr2 (77-171)||(32838928-32839022)
chr2 (85-207)||(37284526-37284646)
chr2 (85-236)||(28110102-28110250)
chr2 (1-58)||(26316933-26316990)
chr2 (119-234)||(27900991-27901106)
chr2 (85-192)||(36447421-36447528)
chr2 (139-220)||(28401396-28401477)
chr2 (154-249)||(24777772-24777867)
chr2 (178-249)||(32840273-32840344)
chr2 (189-249)||(18078161-18078221)
chr2 (131-237)||(34357211-34357318)
chr2 (261-316)||(35179120-35179175)
chr2 (189-238)||(36447347-36447396)
[»] scaffold1770 (1 HSPs)
scaffold1770 (78-249)||(267-438)
[»] scaffold0168 (1 HSPs)
scaffold0168 (77-235)||(7788-7946)
[»] scaffold0054 (1 HSPs)
scaffold0054 (78-249)||(45559-45730)
[»] scaffold0343 (1 HSPs)
scaffold0343 (88-234)||(6911-7056)
[»] scaffold0062 (1 HSPs)
scaffold0062 (109-249)||(298-437)
[»] scaffold0076 (1 HSPs)
scaffold0076 (122-248)||(15367-15491)
[»] scaffold0056 (1 HSPs)
scaffold0056 (88-217)||(71221-71350)
[»] scaffold0060 (1 HSPs)
scaffold0060 (131-237)||(10862-10966)
[»] scaffold0939 (1 HSPs)
scaffold0939 (78-186)||(1110-1213)
[»] scaffold1431 (1 HSPs)
scaffold1431 (180-249)||(1-71)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 32543757 - 32543585
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| || |||||||||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| | |    
T  32543757 atactccttctgtttcacaatacttgtcgcttttagagaataattttgtttcattttacttgttactttcaagttttaatgcgacattaattattggttt 32543658  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  32543657 gtcattaatacccttatctatttattgtagaaaaagaaataataaaatgaaataataaatgattaagggtatt 32543585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 6128956 - 6129120
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||||||||| ||||  | ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||    
T  6128956 tccgtttcacaatacatgtcgcttttgaagaataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataa 6129055  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||    
T  6129056 tacccttatctatttattgtagagagagaaataatggaatgaaataataaatgattaagggtatt 6129120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 19692999 - 19692840
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||||||||| ||||||||||||||  | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |     
T  19692999 tactccatccgtatcacaatacttgtctattttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggttta 19692900  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    ||||||| |||||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  19692899 tcaataacacccttacttatttattgtagagagagaaataatagaatgaaataataaatg 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 19703584 - 19703425
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||||||||| ||||||||||||||  | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |     
T  19703584 tactccatccgtatcacaatacttgtctattttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggttta 19703485  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    ||||||| |||||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  19703484 tcaataacacccttacttatttattgtagagagagaaataatagaatgaaataataaatg 19703425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 22321267 - 22321439
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  22321267 atactccctccgtttcataatacttgtctattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 22321366  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  22321367 gtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatgattaagggtatt 22321439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 12071837 - 12071666
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||| |||   ||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattcttgtcttg 12071738  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  12071737 tcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatgattaagggtatt 12071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 40122494 - 40122657
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  40122494 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataa 40122593  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||   ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  40122594 tacccttgcatatttattgtagagaga-aaaaaataaaatgaaataataaatggttaagggtatt 40122657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 24706244 - 24706419
Alignment:
Q  75 tgatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgat 174  Q
    ||||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||      
T  24706244 tgatactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtc 24706343  T
Q  175 ctgtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  24706344 ttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 24706419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 14261322 - 14261149
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||   |    
T  14261322 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtctt 14261223  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||  |||||||||||    
T  14261222 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaattattaagggtatt 14261149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 21310699 - 21310530
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  21310699 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 21310600  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||  ||||||| || |||||||||||||||||| |||||||||||    
T  21310599 gtcaataatacccttgcatatttattgtag--agagaaa-aaaaaaatgaaataataaatgattaagggtatt 21310530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 25704929 - 25704756
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||| |||||||||||||||||   |    
T  25704929 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcagtgcaacattaattattgtctt 25704830  T
Q  177 gtcaataatacccttatctatttattgtagaaag-agaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| || | ||| ||||||||||||||||||||| |||||||||||    
T  25704829 gtcaataatacccttgcatatttattgtagagagaaaaaaaaataaaatgaaataataaatgattaagggtatt 25704756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 44569115 - 44568942
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||| ||||||||||||||||||||||||   |    
T  44569115 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcatgtttcaatgcaacattaattattgtctt 44569016  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  44569015 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 44568942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 50768129 - 50767969
Alignment:
Q  88 gtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatac 187  Q
    |||||| ||||||||||  | ||||||||| |||||||||||   || |||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataattttgtttcacaatatttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatac 50768030  T
Q  188 ccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||  ||||||||||||| ||| ||| ||||||||||||||||||||  |||||||||||    
T  50768029 ccttacatatttattgtagagaga-aaaaaataaaatgaaataataaattattaagggtatt 50767969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 20249021 - 20249185
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | || |||||| |||||||||||   ||| |||| ||||||||||||||||||| |||||||||||   |||||||||    
T  20249021 tccgtttcataatacttgtccattttggagaataattttgtttcacaatacctgtctctttcaagtttcaatgcaatattaattattgtcttgtcaataa 20249120  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||  ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  20249121 tacccttacatatttattgtagagagagaaaaaatagaataaaataataaatggttaagggtatt 20249185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 21661537 - 21661707
Alignment:
Q  80 ctccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtc 179  Q
    |||| ||||||||| ||||||||||  | ||||||||| |||||||||||   || || |||||||||||||||||||||||||||| |||||   ||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtc 21661636  T
Q  180 aataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||   ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||    
T  21661637 aataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggttaaaggtatt 21661707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 21670301 - 21670471
Alignment:
Q  80 ctccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtc 179  Q
    |||| ||||||||| ||||||||||  | ||||||||| |||||||||||   || || |||||||||||||||||||||||||||| |||||   ||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtc 21670400  T
Q  180 aataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||   ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||    
T  21670401 aataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggttaaaggtatt 21670471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 18507276 - 18507423
Alignment:
Q  88 gtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatac 187  Q
    |||||||||||||||||  | |||||| || |||||||||||  || |||||||||||||||||||||||||||||||||||||||  |||||||||||     
T  18507276 gtttcacaatacttgtcgcttttagagcataattttgtttcacatttcttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatat 18507375  T
Q  188 ccttatctatttattgtagaaagagaaataataaaatgaaataataaat 236  Q
     ||||  |||||||| |||| |||| ||||||| |||||||||||||||    
T  18507376 tcttacttatttattatagagagag-aataatataatgaaataataaat 18507423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 20714426 - 20714515
Alignment:
Q  155 atgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagg 244  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  20714426 atgcaacattaattattggtttgtcaataatacccttatttatttattttagaaagataaataatataatgaaataataaatggttaagg 20714515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 21065037 - 21064865
Alignment:
Q  79 actccatccgtttcacaatacttgt-cattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    ||||| ||||||||| ||||||||| |||| ||||||||| |||||||||||   ||||| || ||||||| |||||||||||||||||||||||   ||    
T  21065037 actccctccgtttcataatacttgttcatt-ttagagaataattttgtttcacaatacttatcgctttcaaatttcaatgcaacattaattattgtcttg 21064939  T
Q  178 tcaataatacccttatctatttattgtagaaag--agaaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||| ||||  ||||||||||||| ||  | ||| |||| ||||||||||||||| |||||| |||||    
T  21064938 acaataatactcttacatatttattgtagagagaaaaaaaaaatagaatgaaataataaatagttaagagtatt 21064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 34324653 - 34324754
Alignment:
Q  148 agtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggta 247  Q
    |||||||||||||||||||| |||    ||||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  34324653 agtttcaatgcaacattaatgattttcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatgattaagggta 34324752  T
Q  248 tt 249  Q
    ||    
T  34324753 tt 34324754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 50839031 - 50839125
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattg 172  Q
    |||||| ||| ||||||||||||||||  | || |||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  50839031 tactccctccatttcacaatacttgtcgcttttggagaataattttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattg 50839125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 26676645 - 26676724
Alignment:
Q  143 tttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaa 222  Q
    |||||||||| ||||||||| ||||||||||| | |||||||||| |||||||||||||||| || ||||||||||||||    
T  26676645 tttcaagttttaatgcaacaataattattgatttatcaataatactcttatctatttattgtggagagagaaataataaa 26676724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 31892492 - 31892339
Alignment:
Q  95 aatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatc 194  Q
    ||||||||||  |||| |||||| ||||||||| |   ||||||||||||| |||||| |||| ||||||||||||||   ||||||||||| ||||       
T  31892492 aatacttgtctatcttggagaataattttgttttacaatacttgtcacttttaagttttaatgtaacattaattattgtcttgtcaataatagccttgca 31892393  T
Q  195 tatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||| | | ||||||| |||| |||||||||||||||||| || ||||||    
T  31892392 tatttattgcaaagagagaaa-aatagaatgaaataataaatggtcaaaggtatt 31892339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 48652491 - 48652379
Alignment:
Q  88 gtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatac 187  Q
    |||||||||||  ||||  | || |||||| ||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||||||| | | ||||||||    
T  48652491 gtttcacaatatatgtcgcttttggagaataattttgtttcactttacttgttactttaaagttttaatgcgacattaattattgatttattaataatac 48652392  T
Q  188 ccttatctattta 200  Q
    ||||| |||||||    
T  48652391 ccttacctattta 48652379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 51777839 - 51777723
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    ||||||||| | ||||||||||||||| |||||  | ||||||||||||||||| | ||||||||||||             ||||| ||||||||||||    
T  51777839 attttgttttactttacttgtcacttttaagtta-agtgcaacattaattattggtttgtcaataatac-------------ttgtaaaaagagaaataa 51777754  T
Q  219 taaaatgaaataataaatggttaagggtatt 249  Q
    ||| ||||||||||||||||||||| |||||    
T  51777753 taacatgaaataataaatggttaagagtatt 51777723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 53219210 - 53219159
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataatacccttatctatttatt 202  Q
    |||||||||||||||||||||||| |||||||||  |||||| |||||||||    
T  53219210 ttcaatgcaacattaattattgatttgtcaataacccccttagctatttatt 53219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 20714329 - 20714413
Alignment:
Q  87 cgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattatt 171  Q
    ||||||||||||  ||||| | ||||||||| | ||| |||||| ||| || ||| ||| || ||||||||||||||||||||||    
T  20714329 cgtttcacaatatctgtcacttttagagaataaatttatttcatattatttatcatttttaaatttcaatgcaacattaattatt 20714413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 26676577 - 26676645
Alignment:
Q  85 tccgtttcacaatacttgtcattcttaga-gaatgattttgtttcattttacttgtcactttcaagttt 152  Q
    |||||||||||||||||| |||| ||  | |||| ||||||||| | ||||||||||||||||||||||    
T  26676577 tccgtttcacaatacttgccatttttttaagaataattttgttttactttacttgtcactttcaagttt 26676645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 42629322 - 42629414
Alignment:
Q  100 ttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataataccctta 192  Q
    |||||||| ||||||||   |||| ||||| |||| |||||||||||||  |||||||||||||||| | ||| | | |||||| ||||||||    
T  42629322 ttgtcatttttagagaaattttttatttcaatttaattgtcactttcaaagttcaatgcaacattaaattttgttttatcaatattaccctta 42629414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 11034489 - 11034423
Alignment:
Q  176 tgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaa 242  Q
    ||||||||||| ||||   ||||||||||  | |||||||||||| |||||||||| ||||||||||    
T  11034489 tgtcaataatatccttgcatatttattgtgcatagagaaataatagaatgaaataacaaatggttaa 11034423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 52057670 - 52057553
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-a 218  Q
    |||| ||||| ||||  ||||||||||||  |||||||||| ||||| | ||  | | |||||| || |||||  |||||||||| || ||||||||| |    
T  52057670 ttttttttcaatttaactgtcactttcaaagttcaatgcaaaattaaatgttattttatcaatattatccttagttatttattgtggagagagaaatata 52057571  T
Q  219 taaaatgaaataataaat 236  Q
    |||||||||||| |||||    
T  52057570 taaaatgaaatattaaat 52057553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 38617852 - 38617924
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattg 203  Q
    |||| |||||||||||||  || ||||||||||||| ||||| | | |||||| || |||||| |||||||||    
T  38617852 tttaattgtcactttcaaagtttaatgcaacattaaatattgttttatcaatattatccttatatatttattg 38617924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 35866891 - 35866719
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||||||||||||||||||||||||  | || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |    
T  35866891 atactccatccgtttcacaatacttgtctattttggagaataattttgtttcattttacttgtcactttcaagtttcaattcaacattaattattggttt 35866792  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     |||||||||| ||||  ||| ||||||||| |||||||||||| ||| |||||||||||| |||||||||||    
T  35866791 atcaataatactcttacatatctattgtagagagagaaataatagaataaaataataaatgtttaagggtatt 35866719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 3585729 - 3585556
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||||||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||  |    
T  3585729 atactccatccgtttcataatacttgtctattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgactt 3585630  T
Q  177 gtcaataatacccttatctatttattgtagaaaga-gaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||| |||| | ||||||||||||||||||| |||||||||||    
T  3585629 gtcaataatacccttgcatatttattgtagagagaggaaaaagtaaaatgaaataataaatgattaagggtatt 3585556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 11646324 - 11646497
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||  |    
T  11646324 atactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgactt 11646423  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||    
T  11646424 gtcaataatacccttgcatatttattgtagagagagaaaaaagtaaaatgaaataataaatgattaagggtatt 11646497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 30999523 - 30999695
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||||   |    
T  30999523 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgttactttcaagtttcaatgcaacattaattattgtctt 30999622  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  30999623 gtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatgattaagggtatt 30999695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 36068358 - 36068185
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||  |    
T  36068358 atactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgactt 36068259  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||    
T  36068258 gtcaataatacccttgcatatttattgtagagagagaaaaaagtaaaatgaaataattaatgattaagggtatt 36068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 7147190 - 7147018
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 7147091  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  7147090 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 7147018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 40058303 - 40058475
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40058402  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  40058403 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 40058475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 40918731 - 40918903
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40918830  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  40918831 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 40918903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 26628823 - 26628974
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||||||||| |||   | || |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| | |||||||    
T  26628823 tccgtttcacaatacatgttgcttttggagaataattttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaataa 26628922  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaat 236  Q
    |||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  26628923 tacccttacctatttattgtagagagagaaataatagaatgaaataataaat 26628974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 28568195 - 28568036
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||||||||||||||  | || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |     
T  28568195 tactccctccatttcacaatacttgtccattttggagaattattttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggttta 28568096  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    |||||| |||||||| ||||||||||| || |||||||||||  ||||||||||||||||    
T  28568095 tcaatattacccttacctatttattgttgagagagaaataattgaatgaaataataaatg 28568036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 28575788 - 28575629
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||||||||||||||  | || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |     
T  28575788 tactccctccatttcacaatacttgtccattttggagaattattttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggttta 28575689  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    |||||| |||||||| ||||||||||| || |||||||||||  ||||||||||||||||    
T  28575688 tcaatattacccttacctatttattgttgagagagaaataattgaatgaaataataaatg 28575629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 43275398 - 43275571
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc- 175  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||| |||     
T  43275398 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattatt-atct 43275496  T
Q  176 tgtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  43275497 tgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 43275571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 27035265 - 27035101
Alignment:
Q  85 tccgtttcacaatacttgt-cattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaata 183  Q
    ||||||||| ||||||||| |||| || |||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  27035265 tccgtttcataatacttgttcatt-ttggagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaata 27035167  T
Q  184 atacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||  |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  27035166 atacccttacatatttactgtagagagagaaaaaatagaatgaaataataaatggttaagggtatt 27035101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 37345848 - 37345676
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||| ||||||||||||||||||||||||||||||   ||    
T  37345848 tactccttccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 37345749  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  37345748 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 37345676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 2539929 - 2540103
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||| ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  2539929 atactccttccgtttcataatacttgtccattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 2540028  T
Q  177 gtcaataatacccttatctatttattgtagaaagag--aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||  ||| ||||||||||||||||||||| |||||||||||    
T  2540029 gtcaataatacccttgcatatttattgtagagagagaaaaaaaataaaatgaaataataaatgattaagggtatt 2540103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 11174222 - 11174395
Alignment:
Q  77 atactccatccgtttcacaatacttgt-cattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    ||||||| ||||||||| ||||||||| |||| ||| ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||       
T  11174222 atactccctccgtttcataatacttgttcatt-ttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtct 11174320  T
Q  176 tgtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  11174321 tgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 11174395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 28562699 - 28562527
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||| ||||||||||| ||  | ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  28562699 atactccctccgtctcacaatacttatccattttgaagaattattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggttt 28562600  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     |||||| ||| |||| ||||||||| | || |||||||||||  |||||||| |||||||  ||||||||||    
T  28562599 atcaatattactcttacctatttatttttgagagagaaataattgaatgaaatcataaatgagtaagggtatt 28562527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 27563878 - 27564009
Alignment:
Q  89 tttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacc 188  Q
    |||||| |||||||||  | || |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  27563878 tttcacgatacttgtcgcttttggagaacaattttgtttcatattacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatacc 27563977  T
Q  189 cttatctatttattgtagaaagagaaataataaa 222  Q
    |||| |||||||||||||  ||||||||||||||    
T  27563978 cttacctatttattgtag--agagaaataataaa 27564009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 13880991 - 13881126
Alignment:
Q  114 gaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagaga 213  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||  ||||   |||||||||||| |||||    
T  13880991 gaataattttgtttcaaattacttgtcactttcaagtttcaatgcaatattaattattgatttgttaataataatcttactaatttattgtagagagaga 13881090  T
Q  214 aataataaaatgaaataataaatggttaagggtatt 249  Q
    | ||||| |||||||||||||||| |||||||||||    
T  13881091 actaatataatgaaataataaatgattaagggtatt 13881126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 20546328 - 20546460
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| |||||||||||   ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||  ||||||||||||| |       
T  20546328 agaataattttgtttcacaatacttgtcactttcaggtttcaatgcaacattaattattgtcttgtcaataatacccttacatatttattgtagaga--- 20546424  T
Q  213 aaataataaaatgaaataataaatggttaagggtat 248  Q
    ||| |||| ||||||||||||||| |||||||||||    
T  20546425 aaaaaatataatgaaataataaattgttaagggtat 20546460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 37510512 - 37510371
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||| || ||||||| || || ||||||| |||  ||||||||||||||||| || |||    
T  37510512 agaataattttgtttcattttacttatcacttttaagtttcaatgtaaaattaattcttaatttgtcaattatattcttatctatttattgtaaaaggag 37510413  T
Q  213 aaat-----aataaaatgaaataataaatggttaagggtatt 249  Q
    ||||     |||||||||||||| |||||| |||||||||||    
T  37510412 aaatgataaaataaaatgaaatattaaatgattaagggtatt 37510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 45400770 - 45400927
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| |||||  ||| || || |||||| ||||||||||| |||| |||||||||| || |||||||||||||||||||||| || |     
T  45400770 tactccctccgtttcataatacaagtcgtttttggagaataattttgtttcactttatttgtcacttttaaatttcaatgcaacattaattattaattta 45400869  T
Q  178 tcaataatacccttatctatttattgtagaaa--gagaaataataaaatgaaataata 233  Q
    |||||||||  ||||  ||||||||||||| |  |||||| |||| ||||||||||||    
T  45400870 tcaataatattcttacttatttattgtagagagggagaaaaaatataatgaaataata 45400927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 10180881 - 10180982
Alignment:
Q  91 tcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataataccct 190  Q
    ||||||||||| ||| | || |||||  |||||||||||  |||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  10180881 tcacaatacttatcacttttggagaacaattttgtttcacattacttgtcactttcaagtttcaatgcaacattagttatgaatttgtcaataataccct 10180980  T
Q  191 ta 192  Q
    ||    
T  10180981 ta 10180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 28326734 - 28326898
Alignment:
Q  154 aatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtattnnnn 253  Q
    ||||||||| ||||||||| | |||||||||||  |||   | |||||||| || |||||||||||| ||||||||||||||| |||||| |||||        
T  28326734 aatgcaacactaattattggtttgtcaataataatcttgcatgtttattgtggagagagaaataatagaatgaaataataaatagttaagagtatt--at 28326831  T
Q  254 nnnnnnncacaaaatttaatcaaaattaacaaaatttatttagttccttggtatatgtaaattcctc 320  Q
           |||| ||||| ||||||| |||||||||||||||  || |||||||||||||||||||||    
T  28326832 tgaaaaacacataatttcatcaaaaataacaaaatttatttgatttcttggtatatgtaaattcctc 28326898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 30906705 - 30906855
Alignment:
Q  94 caatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttat 193  Q
    ||||||||||| || ||  ||||| ||||| ||| |  |||||||| ||||| || ||| ||||||| ||||||||||||  ||| ||||||| |||||     
T  30906705 caatacttgtcgtttttgaagaataattttattttacattacttgttacttttaaattttaatgcaatattaattattgaattgttaataatatccttac 30906804  T
Q  194 ctatttattgtagaaagagaaataataaaatgaaataataaatggttaagg 244  Q
     ||||| ||||||   ||||||||||| ||| |||||||||||||||||||    
T  30906805 ttatttgttgtagtgtgagaaataatagaattaaataataaatggttaagg 30906855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 39151665 - 39151522
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    |||||||||| |||||| ||| | ||  ||||||||||||||| |  |||||||||| |||||||       |||||||||||||||    ||||||| |    
T  39151665 tccgtttcacgatacttatcacttttgaagaatgattttgttttacattacttgtcattttcaag-------gcaacattaattattagcttgtcaatga 39151573  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    ||| |||| ||||||||||||  ||||||||||||| ||| ||||||||||||    
T  39151572 tactcttacctatttattgta--aagagaaataatagaataaaataataaatg 39151522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 12489830 - 12489737
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaatggttaag 243  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| |||| ||||  | ||||| ||||| || |||||| |||||||||| |||||    
T  12489830 ttcaatgaaacatcaattattgatttgtcaataatacccttaactatatattacaaaaagaaaaatatatgaaatgagataataaatgattaag 12489737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10180989 - 10181029
Alignment:
Q  209 agagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  10180989 agagaaatgatagaatgaaataataaatggttaacggtatt 10181029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 35052092 - 35052172
Alignment:
Q  137 tgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    ||||||||||||  |||||||||||||||| | ||| | |  ||||| || |||||| |||||||||| || |||||||||    
T  35052092 tgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattatccttatttatttattgtggagagagaaata 35052172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 43553063 - 43553179
Alignment:
Q  122 ttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ata 220  Q
    |||||||| ||||  ||||||||||||  ||||||||||| ||||   ||| | | |||||| ||||||||  |||||||||  || ||||||||| ||     
T  43553063 ttgtttcaatttaactgtcactttcaaagttcaatgcaactttaaacgttgttttatcaatattacccttagttatttattgcggagagagaaatatatg 43553162  T
Q  221 aaatgaaataataaatg 237  Q
    |||||||||| ||||||    
T  43553163 aaatgaaatattaaatg 43553179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 16662370 - 16662199
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||||||||||||||| | ||  ||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||    
T  16662370 tactccctccatttcacaatacttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttg 16662271  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||| ||||||||||| |||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  16662270 tcattaatacccttacctatttattgtagatagagaaagaatataataaaataataaatggttaagggtatt 16662199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 17636730 - 17636559
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||||||||||||||| | ||  ||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||    
T  17636730 tactccctccatttcacaatacttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttg 17636631  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||| ||||||||||| |||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  17636630 tcattaatacccttacctatttattgtagatagagaaagaatataataaaataataaatggttaagggtatt 17636559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 27814089 - 27813916
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  27814089 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtgtt 27813990  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  27813989 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 27813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 36453131 - 36453296
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  36453131 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataa 36453230  T
Q  185 tacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  36453231 tacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 36453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 25614351 - 25614525
Alignment:
Q  76 gatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    |||||||| ||||||||| |||| |||||  | ||||||||| |||||||||||   ||||||||||||| ||||||||||||||||||||||||||       
T  25614351 gatactccctccgtttcataataattgtccattttagagaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtct 25614450  T
Q  176 tgtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  25614451 tgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 25614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 10981785 - 10981613
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||| |||| |||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  10981785 tactccctccatttcataatatttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 10981686  T
Q  178 tcaataatacccttatctatttattgtagaaagaga-aataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||    
T  10981685 tcaataatacccttgcatatttattgtagagagagagaaaaataaaatgaaataataaatgattaagggtatt 10981613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 47110728 - 47110554
Alignment:
Q  77 atactccatccgtttcacaatacttgt-cattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    ||||||| ||||||||| ||||||| | |||| ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||       
T  47110728 atactccctccgtttcataatacttattcatt-ttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtct 47110630  T
Q  176 tgtcaataatacccttatctatttattgtagaaagag--aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||   ||||||||||||| ||||  ||| |||||||| |||||||||||| |||||||||||    
T  47110629 tgtcaataatacccttgcatatttattgtagagagagaaaaaaaataaaataaaataataaatgattaagggtatt 47110554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 3091755 - 3091622
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| | |||||||||||||||||  ||||||||||||  ||||    
T  3091755 agaataattttgtttcactttacttgtcatttttaagtttcaatgcaacattaaatattggtttgtcaataatacccttacatatttattgtag--agag 3091658  T
Q  213 aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  3091657 aaat-atagaatgaaataataaatggttaagggtatt 3091622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 40349239 - 40349065
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||| ||||||   ||||||||||||| |||||||||||||||||||||||||| |      
T  40349239 atactccctccgtttcataatacttgtccattttagagaataattt-gtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtttg 40349141  T
Q  177 gtcaataatacccttatctatttattgtagaaagaga---aataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||||   || ||||||||||||||||||||| |||||||||||    
T  40349140 gtcaataatacccttgcatatttattgtagagagagagagaaaaataaaatgaaataataaatgattaagggtatt 40349065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 16360656 - 16360487
Alignment:
Q  75 tgatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgat 174  Q
    ||||||||| || ||||||||||| ||||| || || |||||| |||| | |||| |||||||||||||||||||||||||| ||||||||| ||||| |    
T  16360656 tgatactccttctgtttcacaatatttgtcgtttttggagaataattt-gcttcactttacttgtcactttcaagtttcaatacaacattaaatattggt 16360558  T
Q  175 ctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||   ||||| ||| | ||||| ||||||  |||||||||||| || |||||||||||||||||||||||||    
T  16360557 ttgtc---aatactcttttatattttttgtagggagagaaataatagaa-gaaataataaatggttaagggtatt 16360487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 27941025 - 27941131
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||  ||||||||||||||  ||||||||    
T  27941025 attttgtttcacattacttgtcactttcaagtttcattgcaacattaattattggcttgtcaataatacccttacttatttattgtagaa--agaaataa 27941122  T
Q  219 taaaatgaa 227  Q
    || ||||||    
T  27941123 tagaatgaa 27941131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 3498813 - 3498919
Alignment:
Q  136 ttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaa 235  Q
    ||||||| ||||| ||||||||||| ||||||||||||| | || ||||||| ||||  |||||||| || | ||||||| |||||||||||||||||||    
T  3498813 ttgtcacattcaactttcaatgcaaaattaattattgatttatcgataatactcttacatatttattttaaagagagaaaaaataaaatgaaataataaa 3498912  T
Q  236 tggttaa 242  Q
    |||||||    
T  3498913 tggttaa 3498919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 24456800 - 24456907
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| ||||||||| | ||||||||||||| |||||||||||||||||||||| || | || | ||||||||||||||  |||| ||||||||| |||     
T  24456800 agaataattttgtttaactttacttgtcactctcaagtttcaatgcaacattaactactaatttatcaataatacccttgcctatgtattgtagagagat 24456899  T
Q  213 aaataata 220  Q
    ||||||||    
T  24456900 aaataata 24456907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 8380170 - 8380073
Alignment:
Q  123 tgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    ||||||| |||  |||||||||| |||||||||| |||||||| |||||| | ||| || ||||||||||  ||||||||||||| ||| ||||||||    
T  8380170 tgtttcactttttttgtcacttttaagtttcaatacaacattagttattggtttgttaaaaatacccttacttatttattgtagagagaaaaataata 8380073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 7743433 - 7743569
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| ||||| ||||| |||| |||||| ||| ||||||||||||||  ||||||||||   | ||| |||||| |  || ||||||||||||| |||     
T  7743433 agaataattttatttcactttatttgtcatttttaagtttcaatgcaatgttaattattggattctcagtaatactcagatatatttattgtagagagat 7743532  T
Q  213 aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||  |||||||||||||||  |||| ||||||    
T  7743533 aaataattgaatgaaataataaataattaacggtatt 7743569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 35112450 - 35112568
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata- 217  Q
    ||||||||||| ||||  ||||||||||||  |||| ||||||||||| ||||| | |  ||||| ||||||||  |||||||||| || ||| |||||     
T  35112450 attttgtttcaatttaactgtcactttcaaagttcattgcaacattaaatattgttttaccaatattacccttagttatttattgtggagagaaaaatat 35112549  T
Q  218 ataaaatgaaataataaat 236  Q
    ||||||||| ||| |||||    
T  35112550 ataaaatgagatattaaat 35112568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 19570313 - 19570375
Alignment:
Q  155 atgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    |||||||||||| || |  | ||||||| |||||||||||||||||||||| | |||||||||    
T  19570313 atgcaacattaactactattttgtcaattatacccttatctatttattgtaaagagagaaata 19570375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 37983366 - 37983300
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataata 186  Q
    |||| |||||||||| |||||||||| || | |||||| |||||||||||||  | |||||||||||    
T  37983366 ttttatttcattttatttgtcacttttaaatatcaatgtaacattaattattagtttgtcaataata 37983300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 27021699 - 27021650
Alignment:
Q  154 aatgcaacattaattattgatctgtcaataatacccttatctatttattg 203  Q
    ||||||||||||||||||||| ||| |||||||| |||  ||||||||||    
T  27021699 aatgcaacattaattattgatttgtaaataatacacttcactatttattg 27021650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 31399151 - 31399106
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaa 166  Q
    |||||||| ||||| |||||||||||||  ||||||||||||||||    
T  31399151 tttgtttctttttaattgtcactttcaaagttcaatgcaacattaa 31399106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 28200536 - 28200488
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaat 167  Q
    ||||||||||| ||||||||||||||| |||||| ||| || |||||||    
T  28200536 attttgtttcactttacttgtcacttttaagttttaatacagcattaat 28200488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 37983293 - 37983257
Alignment:
Q  213 aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  37983293 aaataatataatgaaataataaatggttaaaggtatt 37983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 41480679 - 41480579
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataatacccttatctatttatt-gtagaaagagaaata-ataaaatgaaataataaatggttaagggtat 248  Q
    |||||||||| ||||| ||||| | |||||||||||||||||  ||||||||  ||||| |||||||| || |||||| || ||||||  | ||||||||    
T  41480679 ttcaatgcaatattaactattgttttgtcaataatacccttagttatttattattagaatgagaaatagatgaaatgacatgataaattatcaagggtat 41480580  T
Q  249 t 249  Q
    |    
T  41480579 t 41480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 18355868 - 18356039
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||||||||||||||  | ||  ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |     
T  18355868 tactccctccgtttcacaatacttgtccattttgaagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattgattta 18355967  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  ||||||||||||| |||||||||||| |||||||| |||||||  ||||||||||    
T  18355968 tcaataatacccttacttatttattgtagagagagaaataatagaatgaaatgataaatgagtaagggtatt 18356039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 13365120 - 13364948
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  13365120 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 13365021  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  13365020 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 13364948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 46694110 - 46694282
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 46694209  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  46694210 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 46694282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 19241667 - 19241840
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||| |||||||||||||||||||||||||||  |    
T  19241667 atactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcacttttaagtttcaatgcaacattaattattgactt 19241766  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   | ||||||||||| ||||||| || ||||||||||||||||||| |||||||||||    
T  19241767 gtcaataatacccttgcatgtttattgtagagagagaaaaaagtaaaatgaaataataaatgattaagggtatt 19241840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 36881559 - 36881385
Alignment:
Q  76 gatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    |||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||       
T  36881559 gatactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtct 36881460  T
Q  176 tgtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||  |||||||||||    
T  36881459 tgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaataattaagggtatt 36881385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 23087938 - 23088103
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | ||| ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  23087938 tccgtttcataatacttgtcgattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataa 23088037  T
Q  185 tacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  23088038 tacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 23088103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 48436502 - 48436332
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||||||  |||||||||| |||||| | || |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||    |    
T  48436502 atactccatctatttcacaatatttgtcacttttggagaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattagctt 48436403  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||| ||||  ||||||||||||  |||||||||||| ||||||||||||||| |||||| |||||    
T  48436402 gtcaataatacacttaattatttattgtag--agagaaataatataatgaaataataaattgttaagtgtatt 48436332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 54086818 - 54086673
Alignment:
Q  89 tttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacc 188  Q
    ||||||||||||||||  | || ||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  54086818 tttcacaatacttgtccattttggagaatacttttgtttcattttatttgtcactttcaagtttcaatacaacattaattattgatttatcaataatacc 54086719  T
Q  189 cttatctatttattgtagaaagagaaataataaaatgaaataataa 234  Q
    |||| |||| |||| |||| ||| |||||||| |||||||||||||    
T  54086718 cttacctatgtattatagagagaaaaataatagaatgaaataataa 54086673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 3383353 - 3383181
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| | ||||| | ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  3383353 tactcctttcgttttataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 3383254  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||| |||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  3383253 tcaataatactcttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgtttaagggtatt 3383181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 199132 - 198960
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| ||||| |||| |||||  | ||||| ||| |||||||||||   || |||||| |||||||||||||||||||||||||||||| | ||    
T  199132 tactccctccatttcataatagttgtccattttagaaaataattttgtttcacaatatttgtcattttcaagtttcaatgcaacattaattattgttttg 199033  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  199032 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 198960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 24064488 - 24064329
Alignment:
Q  87 cgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataata 186  Q
    ||||||||||||| |||| || || |||||| ||||| ||||| ||||| |||||||||||||||| |||| |||||||||||||| | | |||||||||    
T  24064488 cgtttcacaatacatgtcgtttttggagaataattttatttcactttacatgtcactttcaagttttaatgtaacattaattattggtttatcaataata 24064389  T
Q  187 cccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
       ||| |||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||    
T  24064388 ---ttacctatttattgtagagagagaaataatagaataaaataataaatgggtaagggtatt 24064329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 29375410 - 29375243
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  29375410 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 29375311  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||| |||||   |||||||||||||    |||| || |||| |||||||||||||||||||||||||    
T  29375310 gtcaataatgcccttgcatatttattgtaga----gaaaaaaaaaaa-gaaataataaatggttaagggtatt 29375243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 6901830 - 6901669
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    |||||||||||||| |||||  | || |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | |||||||    
T  6901830 tccgtttcacaata-ttgtccattttggagaataattttgtttcactttacttgtcacttttaagtttcaatgcaacattaatcattgatttatcaataa 6901732  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    || ||||| |  |||||||| || |||||||||| | ||||||||||||||||  ||||||||||    
T  6901731 tatccttaac--tttattgttgagagagaaataacagaatgaaataataaatgagtaagggtatt 6901669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 43750358 - 43750242
Alignment:
Q  133 tacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataat 232  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||   |||||||||| || ||||||| |||| |||||||||||    
T  43750358 tacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatactcttgcatatttattgttgagagagaaaaaatagaatgaaataat 43750259  T
Q  233 aaatggttaagggtatt 249  Q
    ||||||||||| |||||    
T  43750258 aaatggttaagtgtatt 43750242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 32834989 - 32835131
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  |  |||||||| |||| |||||||  ||||||||| |||||||||||||||||||||||| ||||| | ||    
T  32834989 tactccctccgtttcataatacttgtccattgtagagaataatttcgtttcatagtacttgtcattttcaagtttcaatgcaacattaagtattgttttg 32835088  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    |||||||||||||||  |||| |||||||| ||||||| ||||    
T  32835089 tcaataatacccttaaatattaattgtagagagagaaaaaata 32835131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 37293644 - 37293539
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||   |||||| | |||||| |||||||| |||||||||||||| ||||||||||    
T  37293644 attttgtttcattttacttgtccctttcaagtttcaatgcaacatta---attgatttatcaatattacccttacctatttattgtagagagagaaataa 37293548  T
Q  219 taaaatgaa 227  Q
    || ||||||    
T  37293547 tagaatgaa 37293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 52009099 - 52009221
Alignment:
Q  127 tcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatga 226  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||   ||||||||||| | ||| |||||||||||||| ||| |||||||| ||| |    
T  52009099 tcatattacttgtcactttcaagtttcgatgcaacattaattattgtcttgtcaataataacattacctatttattgtagagagataaataatagaataa 52009198  T
Q  227 aataataaatggttaagggtatt 249  Q
    |||||||||| |||||| |||||    
T  52009199 aataataaatagttaagtgtatt 52009221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 53559652 - 53559777
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| | | ||||||||  |||  ||||||||||||| | | ||||||    
T  53559652 attttgtttcaatttacttgtcactctcaagtttcaatgcaacattaatcattgatttattaataatactgttacttatttattgtagagaaataaataa 53559751  T
Q  219 taaaatgaaataataaatggttaagg 244  Q
    ||||||||||||||||| || |||||    
T  53559752 taaaatgaaataataaacgggtaagg 53559777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 13703490 - 13703338
Alignment:
Q  77 atactccatccgtttcacaatacttgtc-attcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    ||||||||||||||||| |||||||||| ||||| | ||||| | ||||||| |   ||||||||||||||||||||||||||||||||||||||||       
T  13703490 atactccatccgtttcataatacttgtccattctga-agaataaatttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtgt 13703392  T
Q  176 tgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataa 231  Q
    ||||||||||||||||   ||||||||| ||  ||||||| |||| ||||||||||    
T  13703391 tgtcaataatacccttgcatatttattgcag--agagaaaaaatagaatgaaataa 13703338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 52805070 - 52805186
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||  |||| |||||||  || |||||||||    
T  52805070 tttgttttattttacttgtcactttcaagtttcgatgcaacatttattattgatttatcaataacacccttacttattaattgtaggcagggaaataata 52805169  T
Q  221 aaatgaaataataaatg 237  Q
     ||| ||||||||||||    
T  52805170 taataaaataataaatg 52805186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 48963365 - 48963232
Alignment:
Q  109 ttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaa 208  Q
    ||||||||| ||||| ||||||  || || ||| ||| ||||||||||||||||||||||||||   ||||||||||| |||||| ||||||||||| |     
T  48963365 ttagagaataattttatttcataatatttatcatttttaagtttcaatgcaacattaattattgtcttgtcaataatatccttatatatttattgtaaag 48963266  T
Q  209 agagaaataataaaatgaaataataaatggttaag 243  Q
    ||||| | |||| ||||||||||||||||||||||    
T  48963265 agagata-aatagaatgaaataataaatggttaag 48963232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 37781152 - 37781049
Alignment:
Q  139 tcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatgg 238  Q
    |||||||||| ||||||| |||  |||||||||| | |||||||||||||||||  ||||||||||||| | ||||||| || |||||||||||||||||    
T  37781152 tcactttcaaatttcaatccaaagttaattattggtttgtcaataatacccttaaatatttattgtagagaaagaaatactagaatgaaataataaatgg 37781053  T
Q  239 ttaa 242  Q
    ||||    
T  37781052 ttaa 37781049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 31873894 - 31874015
Alignment:
Q  109 ttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaa 208  Q
    ||||||||| ||||| |||||   |||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||||| ||||||||| |||     
T  31873894 ttagagaataattttatttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaa-aatacccttatatatttattgcagag 31873992  T
Q  209 agagaaataataaaatgaaataa 231  Q
    |||| || |||| ||||||||||    
T  31873993 agagtaaaaatagaatgaaataa 31874015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 48820610 - 48820508
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | ||| | ||| |||||||||||   |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  48820610 tccgtttcataatacttgtccattttaaaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgttttgtcaataa 48820511  T
Q  185 tac 187  Q
    |||    
T  48820510 tac 48820508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 26783739 - 26783661
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacat 163  Q
    ||||||| ||||||||||||  | ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  26783739 tccgttttacaatacttgtctattttaaagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacat 26783661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 19896994 - 19897099
Alignment:
Q  142 ctttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggtta 241  Q
    ||||||||||| ||| ||||||||||||||| | | ||||||||| ||||||||||||||  || ||| |||||||||| |||||||||||||| |  ||    
T  19896994 ctttcaagttttaatacaacattaattattggtttatcaataatatccttatctatttat--tataaaaagaaataatagaatgaaataataaaagagta 19897091  T
Q  242 agggtatt 249  Q
    ||||||||    
T  19897092 agggtatt 19897099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 1455194 - 1455310
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    ||||||| | |||||||||||||||| | ||||||||||||||||||||||| | ||||||||| | ||||| |||| ||  ||||  || ||||| |||    
T  1455194 tttgttttactttacttgtcactttccaatttcaatgcaacattaattattggtttgtcaataacatccttacctatctaccgtag--agggaaattata 1455291  T
Q  221 aaatgaaataataaatggt 239  Q
     ||| ||||||||||||||    
T  1455292 taattaaataataaatggt 1455310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 27707050 - 27707160
Alignment:
Q  139 tcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataataaatg 237  Q
    |||||||||| ||| |||| |||||||| |||||   ||||||||||||||| |  |||||||||||| |||||||| || ||||| |||||||||||||    
T  27707050 tcactttcaaattttaatgtaacattaactattgtcttgtcaataataccct-acatatttattgtagtaagagaaaaaaataaaaagaaataataaatg 27707148  T
Q  238 gttaagggtatt 249  Q
    ||||||| ||||    
T  27707149 gttaaggatatt 27707160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 46188967 - 46188886
Alignment:
Q  154 aatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaa 235  Q
    |||| |||||||||||||| | |||||||||||  |||   ||||||||||||| |||||||||||| ||||||||||||||    
T  46188967 aatgtaacattaattattggtttgtcaataatattcttgcttatttattgtagagagagaaataatataatgaaataataaa 46188886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 48152008 - 48152114
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-at 219  Q
    ||||||||| ||||  ||||||||||||  |||||||||||||||| | ||| | |  ||||| ||||||||  |||||||||| |||||||||||| ||    
T  48152008 tttgtttcaatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttagttatttattgttgaaagagaaatatat 48152107  T
Q  220 aaaatga 226  Q
    |||||||    
T  48152108 aaaatga 48152114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 48214090 - 48214197
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-at 219  Q
    ||||||||| ||||  ||||||||||||  |||||||||||||||| | ||| | |  ||||| ||||||||  |||||||||| || ||||||||| ||    
T  48214090 tttgtttcaatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttagttatttattgtggagagagaaatatat 48214189  T
Q  220 aaaatgaa 227  Q
    ||||||||    
T  48214190 aaaatgaa 48214197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 40228280 - 40228363
Alignment:
Q  154 aatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggt 239  Q
    |||||||||||||||||||   ||| ||||| || ||||  |||||||||||||  ||||||||||| || |||||||||||||||    
T  40228280 aatgcaacattaattattggcttgttaataaaactcttacttatttattgtaga--gagaaataatataacgaaataataaatggt 40228363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 32980662 - 32980759
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    |||||||||  ||||  ||||||||||||  |||||| ||||||||| || || | | |||||| ||||||||  ||||||||||||| |||||||||    
T  32980662 ttttgtttctatttaactgtcactttcaaaattcaatacaacattaaataatgttttatcaatattacccttagttatttattgtagagagagaaata 32980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 43159967 - 43159867
Alignment:
Q  137 tgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaa 235  Q
    ||||||||||||  |||||||||||||||| | ||||| | |||||| ||||||||  ||||||||| ||| ||| ||| | ||||||| ||||| ||||    
T  43159967 tgtcactttcaaaattcaatgcaacattaaatgttgatttatcaatattacccttaaatatttattgcagagagaaaaacatataaaataaaatattaaa 43159868  T
Q  236 t 236  Q
    |    
T  43159867 t 43159867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 44522693 - 44522584
Alignment:
Q  129 attttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaa 228  Q
    ||||| ||| ||| |||||| ||| ||| ||||||||| ||||| | ||| |||||||   |||  |||||||||||||  |||| |||||||||| |||    
T  44522693 atttttcttatcattttcaaattttaatacaacattaaatattggtttgttaataatatttttacatatttattgtaga--gagatataataaaattaaa 44522596  T
Q  229 taataaatggtt 240  Q
    ||||||||||||    
T  44522595 taataaatggtt 44522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 43775597 - 43775496
Alignment:
Q  137 tgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaa 235  Q
    ||||||||||||  |||||||||||||||| ||||| | |  ||||| || ||||| ||||||||||  || ||||||||| || |||||| ||| ||||    
T  43775597 tgtcactttcaaagttcaatgcaacattaaatattgttttaccaatattatccttagctatttattgcggagagagaaatatatgaaatgagatattaaa 43775498  T
Q  236 tg 237  Q
    ||    
T  43775497 tg 43775496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 26105168 - 26105136
Alignment:
Q  217 aataaaatgaaataataaatggttaagggtatt 249  Q
    |||| ||||||||||||||||||||||||||||    
T  26105168 aatataatgaaataataaatggttaagggtatt 26105136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 55141678 - 55141582
Alignment:
Q  142 ctttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaatg 237  Q
    |||||||  |||||||||||||||| | ||| | |  ||||| ||||||||  |||||||||| |||||| ||||| ||||||||| ||| ||||||    
T  55141678 ctttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttagttatttattgttgaaagataaatatataaaatgagatattaaatg 55141582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 13757487 - 13757313
Alignment:
Q  75 tgatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgat 174  Q
    ||||||||||||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||      
T  13757487 tgatactccatccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtc 13757388  T
Q  175 ctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||||||||||   ||||||||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  13757387 ttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataattgattaagggtatt 13757313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 17942721 - 17942550
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | || |||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||| | |    
T  17942721 atactccctccgtttcataatacttgtccattttggagaataattttgttttataatacttgtcactttcaagtttcaatgcaacattaattattgtttt 17942622  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||  ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  17942621 gtcaataatacccttacatatttattgtagagaga-aaaaaataaaatgaaataataaatggttaagggtatt 17942550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 1605856 - 1605684
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||| ||||||| |||||||||||||||   |    
T  1605856 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaaatttcaatacaacattaattattgtctt 1605757  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  1605756 gtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatgattaagggtatt 1605684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 15064694 - 15064864
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | || |||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||||   |    
T  15064694 atactccctccgtttcataatacttgtccattttggagaataattttgtttcataatacttgtcactttcaagtttcaatacaacattaattattgtctt 15064793  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggta 247  Q
    |||||||||||||||   ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||    
T  15064794 gtcaataatacccttgcatatttattgtagagagagaaaaaatataatcaaataataaatggttaagggta 15064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 8626760 - 8626587
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||   |    
T  8626760 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtctt 8626661  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  8626660 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 8626587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 26861042 - 26860873
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    |||||| ||| |||||||||||| ||||||| || |||||| | ||||||||| ||||||||||| ||||| |||||||| ||||||| ||||||||| |    
T  26861042 atactcaatcggtttcacaatacatgtcatttttggagaataagtttgtttcactttacttgtcattttcatgtttcaatacaacattgattattgattt 26860943  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggt 246  Q
    |||||||||||| ||| |||||||||  ||| |||||||||||| ||| |||||||||||||||||||||    
T  26860942 gtcaataatacctttacctatttattacagagagagaaataatagaataaaataataaatggttaagggt 26860873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 29260469 - 29260297
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||| ||||||||||||||||||||||||||| ||   ||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcattttcaagtttcaatgcaacattaattactgtcttg 29260370  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  29260369 tcaataatacccttacatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 29260297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 4129703 - 4129532
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||| |||||   ||    
T  4129703 tactccctccgtttcataatacttgtccattttagaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttg 4129605  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  4129604 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggttaagggtatt 4129532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 7761577 - 7761404
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   || ||||||||||||||||||||||||| ||||||||||  | ||    
T  7761577 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttgtcactttcaagtttcaatgcaatattaattattattttg 7761478  T
Q  178 tcaataatacccttatctatttattgtagaaagag--aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| ||||  ||| ||||||||||||||||||||| |||||||||||    
T  7761477 tcaataatacccttgcatatttattgtagagagaggaaaaaaataaaatgaaataataaatgattaagggtatt 7761404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 8235903 - 8235729
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||| ||||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||| |||||||||||   |    
T  8235903 atacttcatccgtttcataatacttgtctattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaatattaattattgtctt 8235804  T
Q  177 gtcaataatacccttatctatttattgtagaaag--agaaataataaaatgaaataataaatggttaagggtatt 249  Q
     |||||||||||||||  ||||||||||||| ||  | ||| |||| |||||||||||||||| |||||||||||    
T  8235803 atcaataatacccttacatatttattgtagagagataaaaaaaatagaatgaaataataaatgattaagggtatt 8235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 20398237 - 20398406
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| | ||||||||||||| ||||| | || || ||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |  |    
T  20398237 atactcccttcgtttcacaatacatgtcacttttggaaaataattttgtttcactttacttgccactttcaagttttaatgcaacattaattattaaatt 20398336  T
Q  177 gtcaataatacccttatctatttattgt--agaaagagaaataataaaatgaaataataaatggttaagg 244  Q
    |||||||||||||||| ||||||||| |  ||| ||| |||||||| ||| |||||||||||||||||||    
T  20398337 gtcaataatacccttacctatttattatacagagagaaaaataatataataaaataataaatggttaagg 20398406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 31559738 - 31559908
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||| ||  | ||||||||| ||||| ||| |   ||||||| ||||||||||||||||||||||||||||||||   ||    
T  31559738 tactccctccgtttcataatacttctccattttagagaataattttattttacaatacttgttactttcaagtttcaatgcaacattaattattgtcttg 31559837  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    | ||||||||||||   ||||||||||||| ||||||| || |||||||||||||||||| |||||||||||    
T  31559838 ttaataatacccttgcatatttattgtagagagagaaa-aaaaaaatgaaataataaatgattaagggtatt 31559908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 3798334 - 3798211
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataat 219  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||   | | ||||||||||||||| ||||||||| ||||   |||||||||    
T  3798334 ttttgtttcactttacttgtcactttcaagttttaatgcaacattaattatgagtttatcaataatacccttacctatttattataga---agaaataat 3798238  T
Q  220 aaaatgaaataataaatggttaagggt 246  Q
    | | ||||||||||||||  |||||||    
T  3798237 atattgaaataataaatgtgtaagggt 3798211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 30734541 - 30734655
Alignment:
Q  136 ttgtcactttcaagtttcaatgcaacattaattattgatctg-tcaataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataata 233  Q
    |||||| |||||| |||||||||||||||||||||| ||||  ||||||||||||||   ||||||||||||| ||||||| || |||||||||||||||    
T  30734541 ttgtcattttcaaatttcaatgcaacattaattatt-atcttatcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataata 30734639  T
Q  234 aatggttaagggtatt 249  Q
    |||| |||||||||||    
T  30734640 aatgattaagggtatt 30734655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 14287190 - 14287093
Alignment:
Q  152 tcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||| ||||||||||| | || ||||||| |||| ||| |||||||||| ||| ||||||||||||||||||||||| || ||||||||||    
T  14287190 tcaatgcaacactaattattgatttatccataatactcttacctagttattgtagagagataaataataaaatgaaataataaaggggtaagggtatt 14287093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 1814861 - 1814762
Alignment:
Q  87 cgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataata 186  Q
    ||||||||||||| ||||| | ||  ||||| ||||| ||||| ||||||||||||||| || || |||||||||||| ||||||| | |||||||||||    
T  1814861 cgtttcacaatacatgtcacttttgaagaataattttatttcactttacttgtcacttttaatttccaatgcaacattgattattggtttgtcaataata 1814762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 11370576 - 11370657
Alignment:
Q  168 tattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||| | ||||||||| ||||| |||||||||||||| ||| |||||||  |||| ||||||||||||||||| |||||    
T  11370576 tattgatttatcaataatatccttacctatttattgtagagagaaaaataatcgaatggaataataaatggttaagagtatt 11370657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 847829 - 847900
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttatt 202  Q
    ||||||||||| ||||||  |||||||||||||||||||||| | |||||||||||| ||||  ||||||||    
T  847829 tttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactcttaaatatttatt 847900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 3621631 - 3621730
Alignment:
Q  139 tcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaatg 237  Q
    ||||||||||  |||||||||||||||| ||||| |||  ||||| || |||||  ||||||||| ||| ||||||||| || |||||| ||| ||||||    
T  3621631 tcactttcaaagttcaatgcaacattaaatattgttctaccaatattatccttagttatttattgcagagagagaaatatatgaaatgagatattaaatg 3621730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 26470931 - 26470845
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    |||| |||||||||||||  |||||||||||||||| | ||| | || ||||| || |||||  |||||||||| || |||||||||    
T  26470931 tttaattgtcactttcaaagttcaatgcaacattaaatgttgttttgccaatattatccttagttatttattgtggagagagaaata 26470845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 30235423 - 30235473
Alignment:
Q  193 tctatttattgtagaaagagaaataataaaatgaaataataaatggttaag 243  Q
    |||||||||| || | |||||||||||| |||||||||||||||| |||||    
T  30235423 tctatttattatacagagagaaataatagaatgaaataataaatgattaag 30235473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 31244988 - 31244851
Alignment:
Q  100 ttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctattt 199  Q
    |||||||| ||||||||   ||||||||   ||||  ||||||||||||  |||||||||||||||||| ||| | | |||||| ||  ||||  |||||    
T  31244988 ttgtcatttttagagaaattttttgtttgtatttaactgtcactttcaaagttcaatgcaacattaattcttgttttatcaatattattcttagatattt 31244889  T
Q  200 attgtagaaagagaaata-ataaaatgaaataataaat 236  Q
    ||||| || ||||||| | || |||||||||| |||||    
T  31244888 attgtggagagagaaacatatgaaatgaaatattaaat 31244851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 25683229 - 25683400
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | || |||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||| | ||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataattttgtttcataaaacttgtcactttcaagtttcaatgcaacattaattattgttttg 25683328  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  25683329 tcaataatacccttacatatttattgtagagagagaaaaaatagaataaaataataaatggttaagggtatt 25683400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 40886610 - 40886782
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40886709  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  40886710 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 40886782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 12806852 - 12807025
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||   |    
T  12806852 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtctctttcaagtttcaatgcaacattaattattgtctt 12806951  T
Q  177 gtcaataatacccttatctatttattgtagaaaga-gaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||    
T  12806952 gtcaataatacccttgcatatttattgtagagagaggaaaaaataaaatgaaataataaatgattaagggtatt 12807025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 109 - 316
Target Start/End: Original strand, 30402993 - 30403202
Alignment:
Q  109 ttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaa 208  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||| | ||||||||||||||||||| |||||||| ||||    
T  30402993 ttagagaataattttatttcattttacttgtcacttttaagtttcaatacaaaattaattattggtttgtcaataatacccttatccatttattgaagaa 30403092  T
Q  209 agagaaataataaaatgaaataataaatggttaagggtat--tnnnnnnnnnnncacaaaatttaatcaaaattaacaaaatttatttagttccttggta 306  Q
    ||| ||||||||||||||||||| ||||| ||||| ||||  |           |||| ||||| ||||||| ||||||||||||||| ||| |||||||    
T  30403093 agaaaaataataaaatgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttggta 30403192  T
Q  307 tatgtaaatt 316  Q
    | ||||||||    
T  30403193 tgtgtaaatt 30403202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 36561099 - 36561271
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||| |||||   ||    
T  36561099 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaagtattgtcttg 36561198  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||    
T  36561199 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggttaaaggtatt 36561271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 39071152 - 39070988
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    |||| |||||||||||||||  | || |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| | | |||||||    
T  39071152 tccgattcacaatacttgtctatttttgagaataattttgtttcactttacttgtcacttttaagtatcaatgcaacattaattattggtttatcaataa 39071053  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    | | |||| |||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||    
T  39071052 tccacttacctatttattgtagagagagaaataatagaatgaaataataaatgagtaagggtatt 39070988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 734347 - 734510
Alignment:
Q  86 ccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataat 185  Q
    |||||||||||||||||||  | || |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | | ||||||||    
T  734347 ccgtttcacaatacttgtccattttggagaataattttgtttcactttacttgtcactttcaagtttcaatacaacattaattattggtttatcaataat 734446  T
Q  186 acccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    || |||| |||| |||| |||| ||| |||||||| ||||||||||||||||  ||||||||||    
T  734447 actcttacctatatattatagagagaaaaataatagaatgaaataataaatgagtaagggtatt 734510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 16054354 - 16054217
Alignment:
Q  112 gagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaaga 211  Q
    |||||| |||||| |||| |||  ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||    
T  16054354 gagaataattttggttcactttggttgtcactttcaagtttcaatgcaacattaattattagtttgtcaataatacccttatctatttattgtagagaga 16054255  T
Q  212 gaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||| ||| |||||||||||||| |||| ||||    
T  16054254 gaaataatagaataaaataataaatggtcaaggatatt 16054217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 30720491 - 30720664
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||| ||||||   |    
T  30720491 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattagttattgtctt 30720590  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||| ||| |||||||||||    
T  30720591 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataatagatgattaagggtatt 30720664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 10285057 - 10285229
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||| ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  10285057 atactccctccgtttcataatacttgtctattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 10285156  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||| ||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  10285157 gtcaataata-ccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 10285229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 25773929 - 25773754
Alignment:
Q  75 tgatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgat 174  Q
    ||||||||  ||||||||| ||||||||||  | ||||||||| | |||||||||   ||||| ||||||||||||||||||||||||||||||||||      
T  25773929 tgatactctctccgtttcataatacttgtccattttagagaataagtttgtttcacaatacttatcactttcaagtttcaatgcaacattaattattgtc 25773830  T
Q  175 ctgtcaataatacccttatctatttattgtagaaagaga-aataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||||||||||   ||||||||||||| | ||| || ||||||||||||||||||||| |||||||||||    
T  25773829 ttgtcaataatacccttgcatatttattgtagagatagagaaaaataaaatgaaataataaatgattaagggtatt 25773754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 11319834 - 11319664
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||| |||| || ||||||||| |||| ||||||| ||||||||||| | |    
T  11319834 atacttcatccgtttcataatacttgtctattttagagaataattttgtttcactttatttatcactttcaggttttaatgcaatattaattattggttt 11319735  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     | |||||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||  ||||||||||    
T  11319734 attaataatactcttacctatttattgtag--agagaaataatagaatgaaataataaatgagtaagggtatt 11319664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 37900622 - 37900796
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||  ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  37900622 atactccttccgtttcataatacttgtctattttgaagaataattttgtttcacgatacttgtcactttcaagtttcaatgcaacattaattattgtctt 37900721  T
Q  177 gtcaataatacccttatctatttattgtagaaa--gagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||| ||| |  || ||| |||| ||||||||||||||||||||||||||||    
T  37900722 gtcaataatacccttgcatatttattgcagagagtgaaaaaaaatagaatgaaataataaatggttaagggtatt 37900796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 1056623 - 1056778
Alignment:
Q  76 gatactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc 175  Q
    |||||||| ||||||||||||||||||||| | || |||||| ||||| ||||| || |||  |||||||||||||||||||||||||||||||||  |     
T  1056623 gatactccctccgtttcacaatacttgtcacttttggagaataattttatttcaatt-acta-tcactttcaagtttcaatgcaacattaattattagtt 1056720  T
Q  176 tgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaa 235  Q
    |||||||||||| ||||| ||||||||||||  |||||||||| |  |||||||||||||    
T  1056721 tgtcaataatactcttatttatttattgtag--agagaaataacatgatgaaataataaa 1056778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 23097723 - 23097887
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | || |||||| |||||||||||   ||||||| ||||||| |||||||||||| |||||||||||   |    
T  23097723 atactccttccgtttcataatacttgtccattttggagaataattttgtttcacaatacttgttactttcatgtttcaatgcaatattaattattgtctt 23097822  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaa 242  Q
    ||||||||||||||||  ||||||||||||| ||| ||| |||| ||| |||||||||| ||||||    
T  23097823 gtcaataatacccttacatatttattgtagagaga-aaaaaatagaataaaataataaagggttaa 23097887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 7277486 - 7277594
Alignment:
Q  141 actttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggtt 240  Q
    ||||| || ||||||||||| |||||||||||   |||||||||| ||||||  ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  7277486 acttttaaatttcaatgcaaaattaattattgtcttgtcaataatgcccttacttatttattgtagatagagaaaaaatataatgaaataataaatggtt 7277585  T
Q  241 aagggtatt 249  Q
    || ||||||    
T  7277586 aaaggtatt 7277594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 11795300 - 11795403
Alignment:
Q  95 aatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatc 194  Q
    |||| ||||| |||||||||||| ||||||||||| |||| || |||||||||||||||||||||||||||||||| | | | |||||||||| |||| |    
T  11795300 aatatttgtcgttcttagagaataattttgtttcactttatttatcactttcaagtttcaatgcaacattaattataggtttatcaataatactcttacc 11795399  T
Q  195 tatt 198  Q
    ||||    
T  11795400 tatt 11795403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 11797770 - 11797657
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtag--aaagagaaataataaaatgaaa 228  Q
    ||||||||||| |||||| ||||||| ||||||||||||||  | ||||||| ||||||||   ||||||||||||  |||||||||||||| |||||||    
T  11797770 tttacttgtcattttcaaatttcaatacaacattaattattagtttgtcaatgatacccttgcttatttattgtagataaagagaaataatataatgaaa 11797671  T
Q  229 taataaatggttaa 242  Q
    |||||||| |||||    
T  11797670 taataaatagttaa 11797657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 26168185 - 26168075
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| |||||||||| |||| |||| || ||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||| |||  | ||    
T  26168185 tactccttccgtttcacgatacatgtcgtttttagagaataattttgtttcactttaattgtcactttcaagtttcaatgcaagattaatgatttgtttg 26168086  T
Q  178 tcaataatacc 188  Q
    | |||||||||    
T  26168085 ttaataatacc 26168075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 16983499 - 16983365
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| |||||||||||   ||||||||||||| ||||||||||||||||||||||||||   | ||||||||||||||   ||| ||||| ||  ||||    
T  16983499 agaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtcttttcaataatacccttgcatatctattgcag--agag 16983402  T
Q  213 aaataat-aaaatgaaataataaatggttaagggtatt 249  Q
    ||| ||| ||||| ||||||| ||||||||||||||||    
T  16983401 aaaaaataaaaataaaataat-aatggttaagggtatt 16983365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 15629372 - 15629240
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag--aaat 216  Q
    ||||||||||| ||||||||| | ||| || |||||||||| ||||||||||| || | ||||  |||  |||| |||||||||||||| ||||  ||||    
T  15629372 attttgtttcactttacttgttatttttaaatttcaatgcagcattaattattaatttatcaacgatatacttacctatttattgtagagagagaaaaat 15629273  T
Q  217 aataaaatgaaataataaatggttaagggtatt 249  Q
    |||| ||||||||| |||||| |||||| ||||    
T  15629272 aatataatgaaatagtaaatgattaaggatatt 15629240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 21639003 - 21638878
Alignment:
Q  121 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    |||||| || || ||||||||| || |||||| ||||||||||||| ||||| | |||||||||| | |||| |||| |||||| |  ||||||||||||    
T  21639003 tttgttccacttgacttgtcacatttaagtttaaatgcaacattaaatattggtttgtcaataattctcttacctatatattgtgg--agagaaataata 21638906  T
Q  221 aaatgaaataataaatggttaagggtat 248  Q
     | ||||||||||||||| |||| ||||    
T  21638905 gagtgaaataataaatggctaagagtat 21638878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 19831736 - 19831653
Alignment:
Q  139 tcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaa 222  Q
    ||||||||||  |||||||||||||||| | ||| | |  ||||| |||||||| ||||||||||| |||||||||||| ||||    
T  19831736 tcactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttaactatttattgtggaaagagaaatattaaa 19831653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 1055773 - 1055885
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtca----ctttcaagtttcaatgcaacattaattattga 173  Q
    |||||| |||||||| ||||| ||||| || || |||||| | |||| |||| ||||||||||     || |||||||||||||||||||||| |||||     
T  1055773 tactccttccgtttcccaatatttgtcgtttttggagaataaatttgcttcactttacttgtctgtctctctcaagtttcaatgcaacattaaatattgg 1055872  T
Q  174 tctgtcaataata 186  Q
    | ||| |||||||    
T  1055873 tttgttaataata 1055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 4985390 - 4985293
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    |||||||||  ||||  ||||||||||||  |||||||||||||||| || || | | |||||| ||||||||  |||||||||  || |||||||||    
T  4985390 ttttgtttctatttaactgtcactttcaaagttcaatgcaacattaaataatgttttatcaatattacccttaattatttattgaggagagagaaata 4985293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 1056401 - 1056442
Alignment:
Q  194 ctatttattgtagaaagagaaataataaaatgaaataataaatg 237  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||    
T  1056401 ctatttattgtaga--gagaaataatataatgaaataataaatg 1056442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 12305728 - 12305688
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataataccctt 191  Q
    |||||||||||||| ||||||| | ||||||||||||||||    
T  12305728 ttcaatgcaacattgattattgttttgtcaataataccctt 12305688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 12723193 - 12723057
Alignment:
Q  101 tgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctattta 200  Q
    ||||||| || |||||  |||||||| |  |||| |||||||||| ||  |||||||||||| ||||| ||| | |  ||||| ||||||||| ||||||    
T  12723193 tgtcatttttggagaaaaattttgttcctatttaattgtcacttttaaagttcaatgcaacactaattgttgttttaccaatattacccttatatattta 12723094  T
Q  201 ttgtagaaagagaaata-ataaaatgaaataataaat 236  Q
    |||  || ||||||| | || |||||||||| |||||    
T  12723093 ttgcggagagagaaacatatgaaatgaaatattaaat 12723057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 12784640 - 12784540
Alignment:
Q  137 tgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaa 235  Q
    ||||||||||||  |||||||||||| ||||| ||| | |  ||||| ||||||||| |||||||||  || ||||||| | || |||||||||| ||||    
T  12784640 tgtcactttcaaagttcaatgcaacactaattgttgttttaccaatattacccttatatatttattgcggagagagaaacatatgaaatgaaatattaaa 12784541  T
Q  236 t 236  Q
    |    
T  12784540 t 12784540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 51064753 - 51064925
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| || |||||||||||||||||  | ||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||||  | |    
T  51064753 atactccgtctgtttcacaatacttgtccattttagagaataattttgtttcactttatttgtcactttcaagtttcaatgcaacgttaattattagttt 51064852  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||    
T  51064853 atcaataatacccttacctatttattgtagagagagaaataatataatgaaataataaacgagtaagggtatt 51064925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 31003787 - 31003958
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| || |||||||||||||| ||  | || |||||| |||||||||||  ||||||| ||||||||||||||||||||||||||||| ||| | ||    
T  31003787 tactccctctgtttcacaatacttatcgcttttggagaataattttgtttcacattacttgccactttcaagtttcaatgcaacattaattgttggtttg 31003886  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    || |||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  31003887 tccataatacccttacctatttattgtagagagagaaataatagaattaaataataaatggttaagggtatt 31003958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 40783656 - 40783829
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  40783656 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 40783755  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  40783756 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 40783829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 23526517 - 23526345
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||  ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  23526517 atactccctccgtttcataatacttgtccattttgaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 23526418  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||  ||||||||||||| | ||||| |||| ||||||||||||||||||||||||||||    
T  23526417 gtcaataatacccttacatatttattgtagagatagaaaaaatagaatgaaataataaatggttaagggtatt 23526345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 284611 - 284438
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||  |    
T  284611 atactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgactt 284512  T
Q  177 gtcaataatacccttatctatttattgtagaaagaga-aataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||||||||   ||||||||||||| ||||| || | ||||||||||||||||||| |||||||||||    
T  284511 atcaataatacccttgcatatttattgtagagagagagaaaagtaaaatgaaataataaatgattaagggtatt 284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 23045279 - 23045451
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||| |||||||||||||||||||||||||||||||   ||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 23045378  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  23045379 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 23045451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 24771905 - 24772077
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||| |||| ||||||||||||||||||| ||||||||||| | |    
T  24771905 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattgtttt 24772004  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     ||||||||| |||||  ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  24772005 ttcaataatagccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggttaagggtatt 24772077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 25929368 - 25929231
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||||||||||||||  | ||| ||||| |||||||||||||| ||||| | |||||||||||||| |||||||||| ||||||| | |||||||    
T  25929368 tccgtttcacaatacttgtcgcttttaaagaataattttgtttcatttcacttgcccctttcaagtttcaacgcaacattaaatattgatttatcaataa 25929269  T
Q  185 tacccttatctatttattgtagaaagagaaataataaa 222  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  25929268 tacccttatctatttattgtataaagagaaataataaa 25929231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 24876831 - 24876667
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||| |||||||||||||| || || |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||    
T  24876831 tccgtctcacaatacttgtcgtttttggagaataattttgtttcattttacttgtcactttcaagtgtcaatgcgacattaattattggtttgtcaataa 24876732  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||| ||||  |||||||| |||  || ||||||||| |||||||| ||||||||| || ||||||    
T  24876731 tactcttacttatttattctagtgagtgaaataatagaatgaaatgataaatggtcaaaggtatt 24876667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 47037852 - 47038024
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||| ||||| ||||||||| |   ||||||||||||||||||||||||||||||||||||||||   ||    
T  47037852 tactccctccgtttcataatacttgtctattttaaagaataattttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 47037951  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  47037952 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 47038024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 23166850 - 23167004
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    |||||| ||||||||||||||||| |||  | ||||||||| |||||||||||  ||| || | |||||||||||||||| ||||||||||||||||| |    
T  23166850 atactctatccgtttcacaatactcgtcgcttttagagaataattttgtttcacattatttattactttcaagtttcaatacaacattaattattgattt 23166949  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataa 231  Q
    ||||||||||| |||||||||||||| |||| || ||||||||||||| ||||||    
T  23166950 gtcaataatactcttatctatttattttagagagggaaataataaaataaaataa 23167004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 27143014 - 27143177
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    ||||||||||| |||| |||| |||||  | || |||||| |||||||||||  ||||||||||||  ||||||||||| ||||||||||||||| | ||    
T  27143014 tactccatccgcttcataataattgtcgcttttggagaataattttgtttcacattacttgtcact--caagtttcaatacaacattaattattggtttg 27143111  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaag 243  Q
    ||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||    
T  27143112 tcaataatacccttacctatttactgtagagagagaaataatagaatgaaataataaatgattaag 27143177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 321903 - 321731
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | |||||||||  ||||||||||   ||||||||||||||||||||||||||||||||||||||||   ||    
T  321903 tactccctccgtttcataatacttgtccattttagagaatatttttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 321804  T
Q  178 tcaataatacccttatctatttattgtagaaag-agaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| || | ||| ||||||||||||||||||||| |||||| ||||    
T  321803 tcaataatacccttgcatatttattgtagagagaaaaaaaaataaaatgaaataataaatgattaaggatatt 321731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 33083022 - 33082850
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||| ||||| |||||||||||   ||| |||| ||||||| ||||||||||| |||||||||||   |    
T  33083022 atactccctccgtttcataatacttgtccattttaaagaataattttgtttcacaatacatgtctctttcaaatttcaatgcaatattaattattgtctt 33082923  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
     |||||||||||||||  ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  33082922 ctcaataatacccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggttaagggtatt 33082850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 1837826 - 1838001
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcatt---ttacttgtcactttcaagtttcaatgcaacattaattattga 173  Q
    ||||||||||||||||| ||||| |||  || ||  ||||| ||||||||||| |   |||||||||||||| |||||||||||||||||||||||||||    
T  1837826 atactccatccgtttcataatacatgt--tttttgaagaataattttgtttcaataatttacttgtcacttttaagtttcaatgcaacattaattattga 1837923  T
Q  174 tctgtcaataatacccttatctatttattgt--agaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    | | ||||||||||||| |||||||||||||  ||| ||||||||||||  || ||||||||||||| ||||||||||    
T  1837924 tttatcaataataccctaatctatttattgtaaagagagagaaataatatgataaaataataaatgggtaagggtatt 1838001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 40261320 - 40261429
Alignment:
Q  113 agaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagag 212  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||| ||||    
T  40261320 agaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatacccttacatatttattgtagagagag 40261419  T
Q  213 aaataataaa 222  Q
    ||||||||||    
T  40261420 aaataataaa 40261429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 18396971 - 18396807
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||| |||||||||||||||   | || |||||| ||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |     
T  18396971 tactccctccatttcacaatacttgttgcttttggagaataattttgttttacataatttgtcactttcaagtttcaatgcaacattaattattgacttt 18396872  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaa 242  Q
    |||||||| ||||||  ||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  18396871 tcaataattcccttacttatttattgtagagagagaaataatagaatgaaataatgaatggttaa 18396807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 34458724 - 34458882
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||||||||  ||||  | || |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |     
T  34458724 tactccttccgtttcacaatatatgtcgcttttggagaataattttgtttcactttacttgtcactttcaagtttcgatgcaacattaattattggttta 34458823  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaat 236  Q
     | ||||||||||||  |||| ||| |||| |||||||||||| |||||||||||||||    
T  34458824 ccgataatacccttacatattcattatagagagagaaataatagaatgaaataataaat 34458882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 14925732 - 14925612
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    |||||||||||||||||||| || |||||| || ||||||||||| ||||||||||  ||||||||||||||||||| |||  ||||| | |||||||||    
T  14925732 tccgtttcacaatacttgtcgtttttagagcataattttgtttcactttacttgtcgttttcaagtttcaatgcaacctta--tattggtttgtcaataa 14925635  T
Q  185 tacccttatctatttattgtaga 207  Q
    ||| |||| ||||||||||||||    
T  14925634 tactcttacctatttattgtaga 14925612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 31061461 - 31061618
Alignment:
Q  83 catccgtttcacaatacttgtcattcttagagaatgattttgtttca---ttttacttgtcactttcaagtttcaatgcaacattaattattgatctgtc 179  Q
    ||||||||||||||||||||||| | || || ||| ||||| |||||   |  ||||||||||| |||||||||||||||||||||||||||| | || |    
T  31061461 catccgtttcacaatacttgtcacttttggaaaataattttatttcacattactacttgtcactctcaagtttcaatgcaacattaattattggtttgac 31061560  T
Q  180 aataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggtta 241  Q
    ||||||||||| |  |||||| |||    |||||||||||| ||||||||||||||||||||    
T  31061561 aataataccctcacatatttactgt----agagaaataatataatgaaataataaatggtta 31061618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 46771908 - 46771742
Alignment:
Q  85 tccgtttcacaatacttgt-cattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaata 183  Q
    ||||||||| ||||||||| |||| | | ||||| |||||||||||   ||||| ||||||||||||||||||| |||||||||||||    ||||||||    
T  46771908 tccgtttcataatacttgttcattttga-agaataattttgtttcacaatacttatcactttcaagtttcaatgtaacattaattattttcttgtcaata 46771810  T
Q  184 atacccttatctatttattgtagaaagag--aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||| ||||  ||||||||||||| ||||  ||| |||| ||||||| ||||||||||||||||||||    
T  46771809 atactcttacatatttattgtagagagagaaaaaaaatagaatgaaaaaataaatggttaagggtatt 46771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 3657282 - 3657182
Alignment:
Q  147 aagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggt 246  Q
    |||||||||||||||||||||||||| | ||||||||||||  ||| |||||||||||||| |||| ||||||| ||||||||  ||||||||||||| |    
T  3657282 aagtttcaatgcaacattaattattggtttgtcaataatacttttacctatttattgtagagagaggaataatagaatgaaat--taaatggttaaggtt 3657185  T
Q  247 att 249  Q
    |||    
T  3657184 att 3657182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 52478170 - 52478071
Alignment:
Q  150 tttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||||| |||||||| ||||||  |||||| ||||    
T  52478170 tttcaattcaacattaattattgatttgtcaataatatccttatctatttatggtagagagggaaataatagaatgaaatgataaatttttaaggttatt 52478071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 40052505 - 40052606
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | ||   |||||||| |||  ||||||||||    
T  40052505 attttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatatcgttgcttatttattatag--agagaaataa 40052602  T
Q  219 taaa 222  Q
    ||||    
T  40052603 taaa 40052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 40562285 - 40562437
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||| ||||||||| | ||||||||||  | ||  ||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||   |    
T  40562285 atacttcatccgttttataatacttgtccattttgaagaatgattttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 40562384  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaata 230  Q
    |||||| ||| ||||   ||||||||| ||| | ||||| |||| |||||||||    
T  40562385 gtcaatgata-ccttgcatatttattgcagagatagaaaaaatataatgaaata 40562437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 27210962 - 27211090
Alignment:
Q  85 tccgtttcacaatacttgtc-attcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaata 183  Q
    ||||||||| |||| ||||| ||| ||| ||||| |||||||||||   |||||||||| || ||||||||||||||||||||||||||   ||||||||    
T  27210962 tccgtttcataatatttgtccattttta-agaataattttgtttcacaatacttgtcacatttaagtttcaatgcaacattaattattgtcttgtcaata 27211060  T
Q  184 atacccttatctatttattgtagaaagaga 213  Q
    ||||||||   ||||||||| ||| |||||    
T  27211061 atacccttgcatatttattgcagagagaga 27211090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 14350510 - 14350565
Alignment:
Q  114 gaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaatta 169  Q
    |||| ||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  14350510 gaataattttgttttatattacttgtcactttaaagtttcaatgcaacattaatta 14350565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 25929206 - 25929150
Alignment:
Q  261 cacaaaatttaatcaaaattaacaaaatttatttagttccttggtatatgtaaattc 317  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||| |||||||||    
T  25929206 cacagaatttaatcaaaattaacaaaatttatttaattttttggtatgtgtaaattc 25929150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 37927000 - 37926913
Alignment:
Q  162 attaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||| |||||||| |||   ||||||||||| ||||  ||| || |||||||||||| |||||||| || |||||||||    
T  37927000 attaattattgatttgtcaatagtacttctatctatttatcgtagggagataattaataaaatgaagtaataaattgtcaagggtatt 37926913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 19455614 - 19455518
Alignment:
Q  120 ttttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaat 216  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||| | ||| | |  ||||| ||||||||  |||||||||  || ||||||||    
T  19455614 ttttgtttcaatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttaattatttattgcggagagagaaat 19455518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 32347999 - 32348118
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata- 217  Q
    ||||||||||| ||||  || |||||||||  |||||||||||||||| | ||| | |  ||||| ||||||||  |||||||||| || | |||||||     
T  32347999 attttgtttcaatttaactgccactttcaaagttcaatgcaacattaaatgttgttttaccaatattacccttagttatttattgtggagaaagaaatat 32348098  T
Q  218 ataaaatgaaataataaatg 237  Q
    ||||||||| ||| ||||||    
T  32348099 ataaaatgagatattaaatg 32348118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 52037242 - 52037294
Alignment:
Q  195 tatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||  |||||| |||| |||||||||||||||||||||| |||||    
T  52037242 tatttattgtaga--gagaaaaaatagaatgaaataataaatggttaagagtatt 52037294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 1749515 - 1749457
Alignment:
Q  114 gaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattg 172  Q
    |||| |||||||||||   ||||||| ||||| ||||||||||||||||||| ||||||    
T  1749515 gaataattttgtttcacaatacttgttacttttaagtttcaatgcaacattagttattg 1749457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 40261462 - 40261512
Alignment:
Q  266 aatttaatcaaaattaacaaaatttatttagttccttggtatatgtaaatt 316  Q
    ||||| |||||||||||||||||||||||  || |||||||| ||||||||    
T  40261462 aatttcatcaaaattaacaaaatttatttgatttcttggtatgtgtaaatt 40261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 49756684 - 49756750
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata 217  Q
    |||||||||||| ||||||||| | ||||||| |||||||||  ||||||||| ||| | |||||||    
T  49756684 ttcaatgcaacaataattattgttttgtcaattatacccttaagtatttattgcagagatagaaata 49756750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 45226775 - 45226674
Alignment:
Q  137 tgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaataataaa 235  Q
    ||||||||||||  |||||||||||||||| | ||| | | |||||| |  |||||  |||||||||| |||||||||||| || |||||| ||| ||||    
T  45226775 tgtcactttcaaagttcaatgcaacattaaatgttgttttatcaatattgtccttagttatttattgtggaaagagaaatatatgaaatgagatattaaa 45226676  T
Q  236 tg 237  Q
    ||    
T  45226675 tg 45226674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 37835445 - 37835497
Alignment:
Q  151 ttcaatgcaacattaattattgatctgtcaataatacccttatctatttattg 203  Q
    |||||||||||||||| | ||||| ||||||||||||| |||  |||||||||    
T  37835445 ttcaatgcaacattaagtgttgatttgtcaataataccgttaagtatttattg 37835497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 65199 - 65335
Alignment:
Q  112 gagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaaga 211  Q
    |||||| |||||||||||| |||||||||||||| || ||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||    
T  65199 gagaataattttgtttcatattacttgtcacttttaaatttcaatgcaatattaattattggtttgtcaataatacccttatctattta-tgtagaaaga 65297  T
Q  212 gaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  65298 gaaaaaatagaatgaaataataaatggttaagggtatt 65335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 22388137 - 22388307
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||   |    
T  22388137 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtctt 22388236  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||    
T  22388237 gtcaataatacccttgcatatttattgtag--agagaaaaaataaaatgaaataataaatgattaagggtatt 22388307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 23367067 - 23366894
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   |||||||||||||||||||||||| |||||||||||||||   |    
T  23367067 atactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatacaacattaattattgtctt 23366968  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  23366967 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 23366894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 3519177 - 3519013
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||| ||||||||||  | ||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||||||   |||||||||    
T  3519177 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgtaacattaattattgtcttgtcaataa 3519078  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||   ||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  3519077 tacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaattattaagggtatt 3519013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 1102779 - 1102608
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||||| ||||||||||  | | ||||||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||   |    
T  1102779 atactccctccgtttcataatacttgtccatttgagagaataattttgtttcacaatactcgtcactttcaagtttcaatgcaacattaattattgtctt 1102680  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||| ||||||   ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  1102679 gtcaataacacccttgcatatttattgtagagaga-aaaaaataaaatgaaataataaatggttaagggtatt 1102608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 39938448 - 39938275
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    ||||||| ||||||| | ||||||||||  | ||||||||| |||||||||||   ||||||||||||| |||||| |||||||||||||||||||   |    
T  39938448 atactccctccgttttataatacttgtccattttagagaataattttgtttcacaatacttgtcacttttaagttttaatgcaacattaattattgtctt 39938349  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  39938348 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 39938275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 34242239 - 34242083
Alignment:
Q  90 ttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataataccc 189  Q
    |||||||||| |||| |  ||||||||| |||||||||||||||||| |||||||| |||||| ||||||| ||||| ||||| | | ||||||||| ||    
T  34242239 ttcacaatacatgtcgtgtttagagaataattttgtttcattttactggtcacttttaagttttaatgcaatattaaatattggtttatcaataatatcc 34242140  T
Q  190 ttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggt 246  Q
    ||| |||||||||||||| |||||||||| | ||||||||||||||||| |||||||    
T  34242139 ttacctatttattgtagagagagaaataacataatgaaataataaatgggtaagggt 34242083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 39561895 - 39562059
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||||||||| |||| || || |||||| |||||||||||     ||||||||||| || ||||||||||||||||||||||| | ||    
T  39561895 tactccctccgtttcacaatacatgtcgtttttggagaataattttgtttca-----cttgtcacttttaaatttcaatgcaacattaattattggtttg 39561989  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  ||||||||||||  |||||||||||| |||  |||||||||||||||||||||||    
T  39561990 tcaataatacccttacttatttattgtag--agagaaataatagaatacaataataaatggttaagggtatt 39562059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 12969740 - 12969911
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | || |||||| |||||||||||   ||| |||| ||||||||||||||||||| |||||||||||   |     
T  12969740 tactccctccgtttcataatacttgtccattttggagaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattgtcttc 12969839  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  12969840 tcaataatacccttaaatatttattgtagagagagaaaaaatagaataaaataataaatggttaagggtatt 12969911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 1646564 - 1646392
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatc-t 176  Q
    |||||| ||||||||| ||||| ||||  | ||||||||| |||||||||||   ||||| |||||||||||||||||||||||||||| |||| ||| |    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataattttgtttcacaatacttatcactttcaagtttcaatgcaacattaagtatt-atctt 1646466  T
Q  177 gtcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||   ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  1646465 gtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 1646392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 19976564 - 19976436
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||| | |||||||||||||||||  ||||| ||||    
T  19976564 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattagtttatcaataatatcattatctatttattgtag--agagagataa 19976467  T
Q  219 taaaatgaaataataaatggttaagggtatt 249  Q
    || ||| ||||||||||| | ||||||||||    
T  19976466 tataataaaataataaataggtaagggtatt 19976436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 1002765 - 1002890
Alignment:
Q  112 gagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaaga 211  Q
    |||||| ||||| ||| ||||||||||||| |||||| | ||||||||||||||||||||| | | | ||| ||| |||||||||||||||||||| |||    
T  1002765 gagaattattttattttattttacttgtcattttcaaatctcaatgcaacattaattattggtttattaattatatccttatctatttattgtagagaga 1002864  T
Q  212 gaaataataaaatgaaataataaatg 237  Q
    ||||||||| ||||||||||||||||    
T  1002865 gaaataatagaatgaaataataaatg 1002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 40756911 - 40757026
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | || |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |     
T  40756911 tactccctccgtttcataatacttgtccattttggagaataattttgtttcactttagttgtcactttcaagtttcaatgcaacattaattattggttta 40757010  T
Q  178 tcaataatacccttat 193  Q
    ||||||||||||||||    
T  40757011 tcaataatacccttat 40757026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 37673743 - 37673909
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| | |||||||||   |||||||||||| |||||||||||||||||||||||||||   ||    
T  37673743 tactccttccgtttcataatacttgtccattttagagaataactttgtttcaaaatacttgtcacttccaagtttcaatgcaacattaattattgtcttg 37673842  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||  ||||||| || |||||  ||||||||||| |||||||||||    
T  37673843 tcaataatacccttgcatatttattgtag--agagaaa-aaaaaaat--aataataaatgattaagggtatt 37673909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 14780018 - 14779894
Alignment:
Q  112 gagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaaga 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||  | ||| || |||||||||  ||||||| |||||| | |    
T  14780018 gagaataattttgtttcattttacttgtcactttcaagtttcaatgcaagattaacgatttgtttgttaa-aatacccttgcctatttactgtagagaaa 14779920  T
Q  212 gaaataataaaatgaaataataaatg 237  Q
    ||||||||| ||||||||||||||||    
T  14779919 gaaataatataatgaaataataaatg 14779894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 4918038 - 4917880
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||| |||||||||||||||| |||||||| ||  | ||  |||||| ||||  ||||||||||||||| | ||| ||| |||||||||||||||   ||    
T  4918038 tacttcatccgtttcacaatatttgtcatttttgaaaaacaattttgcttcacattacttgtcactttcgaattttaattcaacattaattattggcttg 4917939  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaat 236  Q
    |||||| | |||||| |||||||| |||||  ||||||||||| |||||||||||||||    
T  4917938 tcaatagttcccttacctatttatggtagagtgagaaataatagaatgaaataataaat 4917880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 32838928 - 32839022
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattatt 171  Q
    |||||||||| | |||||||||| |||| || ||  ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32838928 atactccatctgcttcacaatacatgtcgtttttgaagaataattttgtttcattttacttgtcactttcaagtttcaatgcaatattaattatt 32839022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 37284526 - 37284646
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||||||||||| ||  | || |||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | ||| |||    
T  37284526 tccgtttcacaatactt-tctcttttggagaataattttgtttcactttacttgtcattttcaagtttcaatgcaacatt-attattgatttatcactaa 37284623  T
Q  185 tacccttatctatttattgtaga 207  Q
    ||| |||| ||||||||||||||    
T  37284624 tactcttacctatttattgtaga 37284646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 28110102 - 28110250
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    |||||||||||||| || || || || |||||  |  ||||||||  |||||||||| |||||||||||||||||||||||||||||| | | |||||||    
T  28110102 tccgtttcacaatatttatcgtttttggagaaaaaacttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattggtttatcaataa 28110201  T
Q  185 tacccttatctatttattgtagaaagagaaataataaaatgaaataataaat 236  Q
    ||||||||  ||||||||   | ||||||||||||  ||| |||||||||||    
T  28110202 tacccttacatatttatt---gcaagagaaataatcgaataaaataataaat 28110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26316933 - 26316990
Alignment:
Q  1 tgcctctaattatcaatttgtgttaattgtttatatattcatatatttccgatatgct 58  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  26316933 tgcctctaattatcaatttgtgttaattgtttatctattcatatgtttccgatatgct 26316990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 27900991 - 27901106
Alignment:
Q  119 attttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataa 218  Q
    ||||| ||||||||||||| ||||||||||||||| ||| || |||||| ||| || |||||||||||||||||  || ||| | |||  ||| ||||||    
T  27900991 attttatttcattttacttttcactttcaagtttcgatgtaatattaataattaatttgtcaataatacccttacttaattactatagtgagataaataa 27901090  T
Q  219 taaaatgaaataataa 234  Q
    || |||||||||||||    
T  27901091 tataatgaaataataa 27901106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 36447528 - 36447421
Alignment:
Q  85 tccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataa 184  Q
    ||||||||||||||| ||||  | ||||||||| ||||||||||| |||| | ||||||||||| |||||||||||  |||||||||| | | |||||||    
T  36447528 tccgtttcacaatacatgtcgcttttagagaataattttgtttcactttattcgtcactttcaaatttcaatgcaatgttaattattggtttatcaataa 36447429  T
Q  185 taccctta 192  Q
    ||| ||||    
T  36447428 tacactta 36447421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 28401396 - 28401477
Alignment:
Q  139 tcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataata 220  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||||||  ||| |||||||| | ||| ||||||||    
T  28401396 tcactttcaagtttcaaggccacattaattattgatttgtcaataatacccttgcctaattattgtaaagagaaaaataata 28401477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 24777867 - 24777772
Alignment:
Q  154 aatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||||||||| | | ||||| | | ||| ||||||||| |||| ||| |||||||| |||||||||||||||   ||||||||||    
T  24777867 aatgcaacattaattattgatttattaataaaatctttagctatttattctagagagaaaaataatagaatgaaataataaataaataagggtatt 24777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 32840273 - 32840344
Alignment:
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||||||||||||||  |||||||| || | |||||||||||| ||||||||||||||| | ||| ||||||    
T  32840273 tcaataatacccttacttatttattttacagagagaaataatagaatgaaataataaatcgataatggtatt 32840344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 18078221 - 18078161
Alignment:
Q  189 cttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    |||| |||||||||||||| ||| |||||||| |||||| ||||||||||| ||| |||||    
T  18078221 cttaactatttattgtagagagaaaaataatagaatgaattaataaatggtcaagagtatt 18078161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 34357211 - 34357318
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaata-ataaaatgaaat 229  Q
    |||| |||||||||||||  |||||||||||||||| | ||| | |  ||||| || |||||  |||||| ||| |||||||||||| ||||||||| ||    
T  34357211 tttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaatattatccttagttatttactgtggaaagagaaatatataaaatgagat 34357310  T
Q  230 aataaatg 237  Q
    | ||||||    
T  34357311 attaaatg 34357318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 35179120 - 35179175
Alignment:
Q  261 cacaaaatttaatcaaaattaacaaaatttatttagttccttggtatatgtaaatt 316  Q
    |||||||||| ||||||| |||||||||||||||  || |||||||| ||||||||    
T  35179120 cacaaaatttcatcaaaaataacaaaatttatttcatttcttggtatgtgtaaatt 35179175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 36447396 - 36447347
Alignment:
Q  189 cttatctatttattgtagaaagagaaataataaaatgaaataataaatgg 238  Q
    |||| ||||||||||||||  || |||||||| |||||||||||||||||    
T  36447396 cttacctatttattgtagagggataaataatagaatgaaataataaatgg 36447347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 438 - 267
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||| |||||   ||    
T  438 tactccctccgtttcataatacttgtccattttagaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttg 340  T
Q  178 tcaataatacccttatctatttattgtagaaagag-aaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||||   ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  339 tcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggttaagggtatt 267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 7946 - 7788
Alignment:
Q  77 atactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatct 176  Q
    |||||||||| ||||||||||||||||| || ||| ||||| |||||  ||||  ||||||||||||||||||||| ||||||||||||||||| | | |    
T  7946 atactccatctgtttcacaatacttgtcgtttttaaagaataattttaattcacattacttgtcactttcaagttttaatgcaacattaattatcggttt 7847  T
Q  177 gtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaa 235  Q
    ||||||||||| |||| |||||||||||| | ||||||| |||| ||||||||||||||    
T  7846 gtcaataatactcttacctatttattgtaaagagagaaacaatagaatgaaataataaa 7788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 45730 - 45559
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||| ||||||||| ||||||||||  | ||||||||| |||||||||||   ||| |||| ||||||| ||||||||||| |||||||||||   |     
T  45730 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgtctctttcaaatttcaatgcaatattaattattgtatta 45631  T
Q  178 tcaataatacccttatctatttattgtagaaagagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||| |||||  ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  45630 tcaataataaccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggttaagggtatt 45559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 6911 - 7056
Alignment:
Q  88 gtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatac 187  Q
    ||||||||||||||||| || || |||||| |||||||||||| ||| |||||  ||| |||||||||||||||||||||||||||  ||||||||||||    
T  6911 gtttcacaatacttgtcgtttttggagaataattttgtttcatattatttgtccgttt-aagtttcaatgcaacattaattattgacgtgtcaataatac 7009  T
Q  188 ccttatctatttattgtagaaagagaaataataaaatgaaataataa 234  Q
     ||||  ||||||||||||| ||| |||||||| ||| |||||||||    
T  7010 tcttacttatttattgtagagagaaaaataatataataaaataataa 7056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 298 - 437
Alignment:
Q  109 ttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaa 208  Q
    ||||||||| |||||||||||   ||||||||||||| || ||| |||||||||||||||||||   ||||||||||| | |||  |||||||||||||     
T  298 ttagagaataattttgtttcacaatacttgtcacttttaaattttaatgcaacattaattattgtcttgtcaataatatcattacatatttattgtagag 397  T
Q  209 agagaaataataaaatgaaataataaatggttaagggtatt 249  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  398 agagaaa-aatagaatgaaataataaatgattaagggtatt 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 15367 - 15491
Alignment:
Q  122 ttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataa 221  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||||||| | | |||||||||||| ||||  | ||||||||||  |||||||||||      
T  15367 ttgtttcactttacatgtaacttttaagtttcaatgcaacattaattatcggtttgtcaataatacgcttacttttttattgtag--agagaaataattg 15464  T
Q  222 aatgaaataataaatggttaagggtat 248  Q
    |||||||||||||||||||||||||||    
T  15465 aatgaaataataaatggttaagggtat 15491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 71350 - 71221
Alignment:
Q  88 gtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatac 187  Q
    ||||||||||||||||| || ||  ||||| ||||| |||||  |||||||||||||| |||||| ||||||| ||||||||||| | ||| ||| ||||    
T  71350 gtttcacaatacttgtcgtttttgaagaataattttatttcacattacttgtcacttttaagtttgaatgcaaaattaattattggtttgttaattatac 71251  T
Q  188 ccttatctatttattgtagaaagagaaata 217  Q
    ||||| |||||||||||||| |||||||||    
T  71250 ccttacctatttattgtagatagagaaata 71221  T

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Target: scaffold0060 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 10966 - 10862
Alignment:
Q  131 tttacttgtcactttcaagtttcaatgcaacattaattattgatctgtcaataatacccttatctatttattgtagaaagagaaataataaaatgaaata 230  Q
    |||||||||||| || ||||||  |||||||||||| ||||||| |||||||||||  |||| ||||||||||| |  |||||||||||| | |||||||    
T  10966 tttacttgtcacatttaagtttatatgcaacattaaatattgatttgtcaataatattcttacctatttattgtgg--agagaaataatatagtgaaata 10869  T
Q  231 ataaatg 237  Q
    |||||||    
T  10868 ataaatg 10862  T

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Target: scaffold0939 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 1213 - 1110
Alignment:
Q  78 tactccatccgtttcacaatacttgtcattcttagagaatgattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattgatctg 177  Q
    |||||||||||||||||||||  |||     || |||||| ||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||| | |     
T  1213 tactccatccgtttcacaataaatgt-----ttggagaataattttgttttattttacttgtcatttttaagtttcgatgcaacattaattattggttta 1119  T
Q  178 tcaataata 186  Q
    |||||||||    
T  1118 tcaataata 1110  T

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Target: scaffold1431 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 1 - 71
Alignment:
Q  180 aataatacccttatctatttattgtagaaagagaaataa-taaaatgaaataataaatggttaagggtatt 249  Q
    ||||||||||||   ||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||    
T  1 aataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatgattaagggtatt 71  T

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