View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_6 (Length: 700)

Name: NF4445_low_6
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_6
NF4445_low_6
[»] chr3 (9 HSPs)
chr3 (213-699)||(55449257-55449743)
chr3 (17-127)||(55449061-55449171)
chr3 (215-297)||(29563546-29563628)
chr3 (225-297)||(21523722-21523794)
chr3 (216-310)||(11836809-11836903)
chr3 (224-310)||(52426414-52426500)
chr3 (237-290)||(9503959-9504012)
chr3 (220-297)||(29719752-29719829)
chr3 (220-297)||(33458528-33458605)
[»] chr4 (10 HSPs)
chr4 (226-310)||(36706374-36706458)
chr4 (215-322)||(4576583-4576690)
chr4 (227-297)||(6892933-6893003)
chr4 (215-297)||(11432352-11432434)
chr4 (216-310)||(26660237-26660331)
chr4 (216-310)||(6828937-6829030)
chr4 (225-297)||(32519856-32519929)
chr4 (225-297)||(22320104-22320176)
chr4 (236-284)||(30920274-30920322)
chr4 (226-286)||(46499584-46499644)
[»] chr8 (22 HSPs)
chr8 (215-297)||(2510590-2510672)
chr8 (225-290)||(10710024-10710089)
chr8 (225-322)||(22738702-22738801)
chr8 (220-297)||(2620093-2620170)
chr8 (225-297)||(40691292-40691364)
chr8 (220-290)||(25107296-25107366)
chr8 (219-297)||(35458908-35458986)
chr8 (237-297)||(31587849-31587909)
chr8 (220-287)||(9617434-9617501)
chr8 (215-297)||(38995989-38996071)
chr8 (215-297)||(44602011-44602093)
chr8 (227-297)||(44652475-44652545)
chr8 (225-297)||(2062548-2062620)
chr8 (229-297)||(39628724-39628792)
chr8 (229-297)||(39638274-39638342)
chr8 (227-310)||(255031-255114)
chr8 (227-310)||(846542-846625)
chr8 (227-297)||(660806-660876)
chr8 (237-290)||(10812028-10812081)
chr8 (225-297)||(39139473-39139546)
chr8 (226-286)||(12942299-12942359)
chr8 (246-286)||(34405833-34405873)
[»] chr5 (13 HSPs)
chr5 (225-297)||(42108646-42108718)
chr5 (220-297)||(38876753-38876830)
chr5 (220-297)||(19297980-19298057)
chr5 (228-297)||(40514896-40514965)
chr5 (215-297)||(6391357-6391439)
chr5 (216-310)||(22859570-22859664)
chr5 (216-310)||(15897921-15898014)
chr5 (226-297)||(40201751-40201824)
chr5 (227-276)||(11873606-11873655)
chr5 (237-290)||(14830730-14830783)
chr5 (264-297)||(15230860-15230893)
chr5 (237-290)||(16885585-16885638)
chr5 (225-297)||(36440043-36440115)
[»] chr7 (9 HSPs)
chr7 (225-297)||(32420482-32420554)
chr7 (237-300)||(42672886-42672949)
chr7 (225-297)||(25685422-25685494)
chr7 (215-278)||(9271296-9271359)
chr7 (227-297)||(18330704-18330774)
chr7 (219-297)||(32684360-32684438)
chr7 (215-289)||(42766494-42766568)
chr7 (227-296)||(25072816-25072884)
chr7 (215-297)||(41015710-41015794)
[»] chr1 (13 HSPs)
chr1 (215-291)||(51370349-51370425)
chr1 (215-297)||(4362326-4362408)
chr1 (216-310)||(22863362-22863456)
chr1 (215-297)||(35718551-35718633)
chr1 (220-297)||(30562398-30562475)
chr1 (228-308)||(3532785-3532865)
chr1 (246-310)||(4402128-4402192)
chr1 (218-322)||(1825088-1825194)
chr1 (227-297)||(3022728-3022799)
chr1 (227-322)||(6136059-6136154)
chr1 (215-297)||(27089824-27089906)
chr1 (237-290)||(25412210-25412263)
chr1 (228-297)||(45621527-45621596)
[»] chr6 (5 HSPs)
chr6 (216-322)||(10667666-10667773)
chr6 (215-297)||(6228048-6228130)
chr6 (215-297)||(13640929-13641011)
chr6 (215-297)||(33248188-33248270)
chr6 (220-297)||(6248720-6248797)
[»] chr2 (11 HSPs)
chr2 (215-297)||(13560081-13560163)
chr2 (216-310)||(39848422-39848516)
chr2 (229-297)||(10057357-10057425)
chr2 (224-310)||(5712454-5712540)
chr2 (215-323)||(16055069-16055180)
chr2 (227-287)||(30992453-30992512)
chr2 (226-297)||(9730266-9730336)
chr2 (216-310)||(16202001-16202098)
chr2 (215-290)||(40629305-40629380)
chr2 (215-297)||(43898202-43898285)
chr2 (237-290)||(9716199-9716252)
[»] scaffold0373 (1 HSPs)
scaffold0373 (216-310)||(7390-7483)
[»] scaffold0330 (1 HSPs)
scaffold0330 (215-322)||(10867-10973)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 213 - 699
Target Start/End: Original strand, 55449257 - 55449743
Alignment:
Q  213 gctaaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaa 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449257 gctaacctttttagtaatttaaacttattactctacattaattattttcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaa 55449356  T
Q  313 gtcagatttctaaaataaaatgtcatgtttaatatcaaaatgaagtttaacttaattgatcaattgattcgttagtctgtttaaacatatgtttgattgc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449357 gtcagatttctaaaataaaatgtcatgtttaatatcaaaatgaagtttaacttaattgatcaattgattcgttagtctgtttaaacatatgtttgattgc 55449456  T
Q  413 ttaattaaaaatattcataggaaattggtctttaagttagctaacatgccataccaatgtttcaaaatgaccagattgcttatttgtacaagtgtagtac 512  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449457 ttaattaaaaatgttcataggaaattggtctttaagttagctaacatgccataccaatgtttcaaaatgaccagattgcttatttgtacaagtgtagtac 55449556  T
Q  513 aaataactggctacaaaattgactgttattgctgaggtaaattgactgttatatctgaagcacattgtatagtgtttctttttaaccttattaaagcaaa 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449557 aaataactggctacaaaattgactgttattgctgaggtaaattgactgttatatctgaagcacattgtatagtgtttctttttaaccttattaaagcaaa 55449656  T
Q  613 ttctaaacttctcttctcaagctgtcacacctcagtctaagaagatattcttgagttcaaaaaccataggtggtgtagcgttagacc 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449657 ttctaaacttctcttctcaagctgtcacacctcagtctaagaagatattcttgagttcaaaaaccataggtggtgtagcgttagacc 55449743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 55449061 - 55449171
Alignment:
Q  17 tttttcaaaatagacaacgtgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgaagcctttcaggccgagctacttaa 116  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55449061 tttttaaaaatagacaacgcgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgaagcctttcaagccgagctacttaa 55449160  T
Q  117 gtacggataac 127  Q
    |||||||||||    
T  55449161 gtacggataac 55449171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 29563546 - 29563628
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| ||||||| | |||||||||| | |||| ||||||||||||||| ||||||||||| ||||||    
T  29563546 taactttttcagtaatttaagcttattagtatacattaattttatgcatatttaaatgtattattataaactagaattgaaat 29563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 21523722 - 21523794
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| |||||||  ||||||||||| |||||| ||||| ||||||||| |||||||| || ||||||    
T  21523722 agtaatttaagcttattagcctacattaattttttgcatatttatatgtattattataaactaaaattgaaat 21523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 11836809 - 11836903
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| || |||||||| ||||||| | ||||||| || |  ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  11836809 aacctttaaattaatttaagcttattagtttacattatttttccgcatatttaaatgtattattataaattagaattgaaatatgatataatata 11836903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 52426500 - 52426414
Alignment:
Q  224 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||||||| ||||||| | || |||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  52426500 aagtaatttaagcttattagtttatattattttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 52426414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 9504012 - 9503959
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9504012 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9503959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 29719829 - 29719752
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| ||||||||||  ||||||   || ||||||| ||| |||||||||||||||||| | ||||||||| ||||||    
T  29719829 tttttagtaatttaagtttattagcatagattaattttttacacatttaaatgtattattacaaactagaattgaaat 29719752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 33458528 - 33458605
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||||  ||||||| | || |||||||  | ||| ||||||||||||||| ||||||||||| ||||||    
T  33458528 tttttagtaatttatgcttattagtatatattaatttctcgcatatttaaatgtattattataaactagaattgaaat 33458605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 36706458 - 36706374
Alignment:
Q  226 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||||||||||||| |||||||||||| ||| || ||||||||||||||| ||||| ||||| |||||| || |||||||||    
T  36706458 gtaatttaaacttattagtctacattaatttttttcaaatttaaatgtattattataaagtagaattgaaatatgatatcatata 36706374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 215 - 322
Target Start/End: Original strand, 4576583 - 4576690
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 314  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| |||||||| |||||| ||||||||||| |||||| || ||| ||||| |||    
T  4576583 taacttttttagtaatttaagcttattagtatatattaattttttgcatatttaaatttattattataaactagaattgaaatatgatataatatatagt 4576682  T
Q  315 cagatttc 322  Q
    || |||||    
T  4576683 caaatttc 4576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 6892933 - 6893003
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||| ||||||| | |||||||||  |||||| ||||||||||||||| ||||||||||| ||||||    
T  6892933 taatttaagcttattagtatacattaatgttttgcatatttaaatgtattattataaactagaattgaaat 6893003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 11432352 - 11432434
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| |||| || | |||||||||| |||||| |||||||||||||||  |||||||||| ||||||    
T  11432352 taactttttcagtaatttaagcttactaatatacattaattttttgcatatttaaatgtattattgtaaactagaattgaaat 11432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 26660331 - 26660237
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| ||||||||||||||| ||||| || || |||||| || ||| |||||    
T  26660331 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaatgtattattataaattataattgaaatatgatataatata 26660237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 6828937 - 6829030
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  6828937 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 6829030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 32519929 - 32519856
Alignment:
Q  225 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| ||||||| | ||||||| || ||| ||||||||||||||||||| |||||||| || ||||||    
T  32519929 agtaatttaagcttattagtatacattattttttttgcacatttaaatgtattattataaactataattgaaat 32519856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 22320176 - 22320104
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| | ||||| |||||||||||| |||||| ||||| || |||||  ||||||||||| ||||||    
T  22320176 agtaatttaagcatattagtctacattaattttttgcatatttatatatattactataaactagaattgaaat 22320104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 30920274 - 30920322
Alignment:
Q  236 cttattactctacattaattatttgcacatttaaatgtattatgataaa 284  Q
    ||||||||| | |||||||| |||||| ||||||||||||||| |||||    
T  30920274 cttattactatgcattaattgtttgcatatttaaatgtattattataaa 30920322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 46499644 - 46499584
Alignment:
Q  226 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaact 286  Q
    |||||||||||||||||  ||||||||||  || ||  ||||||||||||||| |||||||    
T  46499644 gtaatttaaacttattagactacattaatatttagcttatttaaatgtattattataaact 46499584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 2510672 - 2510590
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2510672 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttaaatgtattattataaactagaattgaaat 2510590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 10710024 - 10710089
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||||| ||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||    
T  10710024 agtaatttgaacttattagtatacattaattttttgcacatttaaatgtattattataaactagaa 10710089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 22738801 - 22738702
Alignment:
Q  225 agtaatttaaacttattactctacattaattattt--gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtcagatttc 322  Q
    |||||||||||||||||| | |||||||||| |||  ||| ||||||||||||||| ||||||||||| |||||| || ||| ||||| ||||| |||||    
T  22738801 agtaatttaaacttattagtatacattaattttttttgcatatttaaatgtattattataaactagaattgaaatatggtataatatatagtcaaatttc 22738702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 2620093 - 2620170
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||||| ||||||| | |||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2620093 ttttcagtaatttaagcttattagtatacatttattttttgcatatttaaatgtattattataaactagaattgaaat 2620170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 40691364 - 40691292
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| ||||||| |||||||||||  |||||| ||||| ||||||||| ||||||||||| ||||||    
T  40691364 agtaatttaagcttattagtctacattaatattttgcatatttatatgtattattataaactagaattgaaat 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 25107296 - 25107366
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| |||||||||||    
T  25107296 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaactagaa 25107366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 35458986 - 35458908
Alignment:
Q  219 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| ||||||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  35458986 ctttaaagtaatttaaacttattagtgtacattattttttcgcatatttaaatgtattattataaattagaattgaaat 35458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 31587849 - 31587909
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  31587849 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaat 31587909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 9617501 - 9617434
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 287  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| ||||||||||||||| ||||||||    
T  9617501 tttttagtaatttaagcttattagtatacattaactttttgcatatttaaatgtattattataaacta 9617434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 38995989 - 38996071
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  38995989 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 38996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 44602011 - 44602093
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  44602011 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 44602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 44652475 - 44652545
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||||||||| | | |||||||  |||||| ||||||||| ||||| ||||||||||| ||||||    
T  44652475 taatttaaacttattagtatgcattaatcttttgcatatttaaatgcattattataaactagaattgaaat 44652545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 2062548 - 2062620
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| ||||||| | |||||||||| |||||| ||||||||||| ||| | |||||| || ||||||    
T  2062548 agtaatttaagcttattagtatacattaattttttgcatatttaaatgtactattacaaactataattgaaat 2062620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 39628724 - 39628792
Alignment:
Q  229 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39628724 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39628792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 39638274 - 39638342
Alignment:
Q  229 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39638274 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39638342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 255114 - 255031
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || |||||| || ||| |||||    
T  255114 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaatatgatataatata 255031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 846542 - 846625
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || |||||| || ||| |||||    
T  846542 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaatatgatataatata 846625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 660806 - 660876
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  660806 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaat 660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 10812081 - 10812028
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  10812081 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 10812028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 39139546 - 39139473
Alignment:
Q  225 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||||  |||||| |||||||||||| ||| ||| ||||| || |||||| ||||||||||| ||||||    
T  39139546 agtaatttaagtttattagtctacattaatttttttgcatatttatatttattattataaactagaattgaaat 39139473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 12942359 - 12942299
Alignment:
Q  226 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaact 286  Q
    |||||||||| |||||| | ||||||| || ||||||  |||||||||||||| |||||||    
T  12942359 gtaatttaaatttattagtatacattatttttttgcatttttaaatgtattattataaact 12942299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 34405833 - 34405873
Alignment:
Q  246 tacattaattatttgcacatttaaatgtattatgataaact 286  Q
    |||||||||| |||||| ||||||||||||||| |||||||    
T  34405833 tacattaattgtttgcatatttaaatgtattattataaact 34405873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 42108718 - 42108646
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  42108718 agtaatttaagcttattaatctacattaattttttgcatatttatatgtattattataaactagaattgaaat 42108646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 38876830 - 38876753
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||| ||||||||| | |||||||||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  38876830 tttttagtaatttcaacttattaatatacattaattttttgtatatttaaatgtattattataaactagaattgaaat 38876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 19297980 - 19298057
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| || |||||||||||| ||||||||||| ||||||    
T  19297980 ttttcagtaatttaagcttattagtatacattaactttttgcatatataaatgtattattataaactagaattgaaat 19298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 40514965 - 40514896
Alignment:
Q  228 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||| ||| ||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  40514965 aatttaagcttgttagtgtacattaattttttgcatatttaaatgtattattataaactagaattgaaat 40514896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 6391357 - 6391439
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| ||||||| | | |||||||| |||| | ||||||||||||||  ||||||||||| ||||||    
T  6391357 taactttttcagtaatttaagcttattaatatgcattaattttttgtatatttaaatgtattactataaactagaattgaaat 6391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 22859570 - 22859664
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| |||||||  |||||| ||||| ||||| |||||| || ||| |||||    
T  22859570 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaaactattattataaattagaattgaaatatgatataatata 22859664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 15897921 - 15898014
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    |||||||||| |||||||||| ||||| |||||||||||| ||  |||| ||||||  ||||| || |||||||| |||||| || | |||||||    
T  15897921 aaccttttaaataatttaaacgtattagtctacattaatttttctcacaattaaatagattattat-aactagaattgaaatatgatttcatata 15898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 40201751 - 40201824
Alignment:
Q  226 gtaatttaaacttattactctacatta--attatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||| ||||||| | |||||||  ||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  40201751 gtaatttaagcttattagtatacattattattttttgaatatttaaatgtattattataaactagaattgaaat 40201824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 11873655 - 11873606
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtatt 276  Q
    |||||||||||||||| | |||||||||| | |||| |||||||||||||    
T  11873655 taatttaaacttattagtatacattaattttctgcatatttaaatgtatt 11873606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 14830783 - 14830730
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  14830783 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 14830730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 15230860 - 15230893
Alignment:
Q  264 atttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||||||||||||||| ||||||||||||    
T  15230860 atttaaatgtattatgataaattagaaatgaaat 15230893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 16885638 - 16885585
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  16885638 ttattaatttacattaattttttgcatatataaatgtattattataaactagaa 16885585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 36440115 - 36440043
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||||  |||||| | |||||||  | |||||| ||||||||||||||| ||||| ||||| ||||||    
T  36440115 agtaatttaagtttattagtatacattatatttttgcatatttaaatgtattattataaagtagaattgaaat 36440043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 32420554 - 32420482
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||| ||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| ||||||    
T  32420554 agtaatttaagcttattagtatacattaattttttgcatatttaaatgttttattataaactagaattgaaat 32420482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 42672949 - 42672886
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtg 300  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||||||    
T  42672949 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaatgtg 42672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 25685494 - 25685422
Alignment:
Q  225 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||||  |||||| |||||| ||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  25685494 agtaatttaagtttattagtctacactaattttttgcatatttatatgtattattataaactagaattgaaat 25685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 9271359 - 9271296
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattat 278  Q
    |||| |||| |||||||||| | ||||| | ||||||||||||||| | |||||||||||||||    
T  9271359 taactttttcagtaatttaagcctattagtatacattaattatttgtatatttaaatgtattat 9271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 18330704 - 18330774
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||  |||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  18330704 taatttaaggttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 18330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 32684438 - 32684360
Alignment:
Q  219 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||| |||||||||| ||||||  |  ||||||| | |||||| ||||||||||| ||| ||||||||||| ||||||    
T  32684438 cttttcagtaatttaagcttatttgtgaacattaaatttttgcatatttaaatgtaatattataaactagaattgaaat 32684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 42766494 - 42766568
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactaga 289  Q
    ||||||||  |||||||||| |||| || ||||| |||||| ||| ||  |||||||||||||| ||||||||||    
T  42766494 taacctttacagtaatttaagcttactagtctacgttaattttttacatgtttaaatgtattattataaactaga 42766568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 25072884 - 25072816
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaa 296  Q
    |||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||    
T  25072884 taatttaaacttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaa 25072816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 41015710 - 41015794
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaa--ttatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||||||||||| | ||||||||  || ||| || |||||||||||||||  ||||||| || ||||||    
T  41015710 taacttttttagtaatttaaacttattagtatacattaatttttttttcatatttaaatgtattattgtaaactataattgaaat 41015794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 51370425 - 51370349
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaa 291  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| |||| |||||||||| ||||||||||||    
T  51370425 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttgaatgtattattataaactagaaa 51370349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 4362408 - 4362326
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| ||||||||||||||| ||||| | | |||||||||  |||||| ||||||||||||||| |||||||| || ||||||    
T  4362408 taactttttaagtaatttaagcttatcagtatacattaatgttttgcatatttaaatgtattattataaactaaaattgaaat 4362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 22863456 - 22863362
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  22863456 aacctttaaagtaatttaagcttattagtttacattattttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 22863362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 35718633 - 35718551
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||||| ||||||||||  |||||| | ||| || ||| |||||| ||| ||||||||||||||||||||||| ||||||    
T  35718633 taacctttttagtaatttaagtttattagtatactttgattttttgcatattcaaatgtattatgataaactagaattgaaat 35718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 30562475 - 30562398
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||    
T  30562475 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaattagaattgaaat 30562398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 3532785 - 3532865
Alignment:
Q  228 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcata 308  Q
    |||||||| |||||| |||||| ||||| |||||| ||||||||||||||| || || ||||| |||||| || |||||||    
T  3532785 aatttaaaattattagtctacaataattttttgcatatttaaatgtattattatgaaatagaattgaaatatgatatcata 3532865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 4402128 - 4402192
Alignment:
Q  246 tacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    |||||||||| |||||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  4402128 tacattaattttttgcatatttaaatgtattattataaattagaattgaaatatgatataatata 4402192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 1825088 - 1825194
Alignment:
Q  218 ccttttaagtaatttaaacttattactctacattaattatttgcacat--ttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtc 315  Q
    |||||| ||||||||||  |||||| | |||||||||| ||| || ||  ||||||||||||| ||||||||||| |||||| || ||  ||||| ||||    
T  1825088 cctttttagtaatttaaggttattagtatacattaattttttacatatatttaaatgtattattataaactagaattgaaatatgatacgatatatagtc 1825187  T
Q  316 agatttc 322  Q
    | |||||    
T  1825188 aaatttc 1825194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 3022799 - 3022728
Alignment:
Q  227 taatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||| ||||||  | |||||||||| ||| ||| ||||||||||||||| ||||||||||| ||||||    
T  3022799 taatttaagcttatttgtatacattaatttttttgcatatttaaatgtattattataaactagaattgaaat 3022728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 6136154 - 6136059
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtcagatttc 322  Q
    |||||||| ||||||| | |||||||||| ||||||  |||||||  ||||| ||||||||||| |||||| || ||  ||||| ||||| |||||    
T  6136154 taatttaagcttattagtatacattaattttttgcatgtttaaatacattattataaactagaattgaaatatgatacaatatatagtcaaatttc 6136059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 27089906 - 27089824
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| ||||||| | ||||||  || ||| || ||||||||||||||| |||||||| || ||||||    
T  27089906 taactttttcagtaatttaagcttattagtatacattgcttttttacatatttaaatgtattattataaactaaaattgaaat 27089824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 25412210 - 25412263
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  25412210 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 25412263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 45621527 - 45621596
Alignment:
Q  228 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    ||||||| ||||||| | | |||||||| |||||| ||||||||||||||| | |||||| || ||||||    
T  45621527 aatttaaccttattagtatccattaattctttgcatatttaaatgtattattacaaactataattgaaat 45621596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 10667773 - 10667666
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 314  Q
    |||||||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||| | ||||||||||| |||||| || ||  ||||| |||    
T  10667773 aaccttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattgttataaactagaattgaaatatggtacaatatatagt 10667674  T
Q  315 cagatttc 322  Q
    || |||||    
T  10667673 caaatttc 10667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 6228048 - 6228130
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||||||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  6228048 taactttttcagtaatttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactataattgaaat 6228130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 13641011 - 13640929
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| ||||| ||||||||| ||||||| | |||||||||| ||| || || |||||||||||| ||||||||||| ||||||    
T  13641011 taactttttatgtaatttaagcttattagtatacattaattttttacatatataaatgtattattataaactagaattgaaat 13640929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 33248270 - 33248188
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| ||||||||||||||  ||||||||||| ||||||    
T  33248270 taacttttttagtaatttaagcttattagtataaattaattttttgcatatttaaatgtattagtataaactagaactgaaat 33248188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 6248720 - 6248797
Alignment:
Q  220 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||||| ||||||| | |||||||||| ||||||  | |||||||||||| || |||||||| ||||||    
T  6248720 ttttcagtaatttaagcttattagtatacattaattttttgcatttataaatgtattattatgaactagaattgaaat 6248797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 13560163 - 13560081
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||| ||||||||||  |||||| | |||||||||| |||||||||||||||||||||| ||||| | ||| ||||||    
T  13560163 taactttttcagtaatttaattttattagtatacattaattttttgcacatttaaatgtattattataaatttgaattgaaat 13560081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 39848422 - 39848516
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| || |||||||||||||||| | ||||||| || |||||| ||| ||||||||||| ||||| ||||| |||||| || ||| |||||    
T  39848422 aacctttaaaataatttaaacttattagtttacattatttttttgcatattaaaatgtattattataaattagaattgaaatatgatataatata 39848516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 10057425 - 10057357
Alignment:
Q  229 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  10057425 atttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 10057357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 5712454 - 5712540
Alignment:
Q  224 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||||||| ||||||| | ||||||| || ||  || ||||||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  5712454 aagtaatttaagcttattagtttacattattttttcacatatttaaatgtattattataaattagaattgaaatgtgatatgatata 5712540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 16055180 - 16055069
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtat--tatgataaactagaaatgaaatgtgctatcatataa 311  Q
    |||| |||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||  ||| ||||||||||| |||||| || ||  |||||     
T  16055180 taactttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattatattataaactagaattgaaatctgatacaatatat 16055081  T
Q  312 agtcagatttct 323  Q
    ||||| ||||||    
T  16055080 agtcaaatttct 16055069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 30992512 - 30992453
Alignment:
Q  227 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 287  Q
    ||||| |||||||||| |||| ||||||| |||||| ||||||||||||||| ||||||||    
T  30992512 taattcaaacttattagtctatattaatt-tttgcatatttaaatgtattattataaacta 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 9730336 - 9730266
Alignment:
Q  226 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||||||||  |||||| | |||||||||| ||| || ||||||||||||||| ||||||||||| ||||||    
T  9730336 gtaatttaaggttattagtatacattaatt-tttacatatttaaatgtattattataaactagaattgaaat 9730266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 16202001 - 16202098
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattattt---gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| || |||||||||||||||| | ||||||| || |||   ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  16202001 aacctttaaaataatttaaacttattagtttacattatttttttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 16202098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 40629380 - 40629305
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||| |||| |||||||| || |||||| ||||||||| || || ||| |||||||| |||||| |||||||||||    
T  40629380 taacattttgagtaatttgaatttattagtctacattagtttttcgcatatttaaatttattattataaactagaa 40629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 43898285 - 43898202
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaa-ttatttgcacatttaaatgtattatgataaactagaaatgaaat 297  Q
    |||| |||||||||||||||||||||||   |||||||| || |||||| ||||||| ||||||| || || ||||| ||||||    
T  43898285 taactttttaagtaatttaaacttattaaaatacattaatttttttgcatatttaaaagtattattattaaatagaattgaaat 43898202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 9716199 - 9716252
Alignment:
Q  237 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 290  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9716199 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9716252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 7483 - 7390
Alignment:
Q  216 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 310  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  7483 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 7390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 322
Target Start/End: Original strand, 10867 - 10973
Alignment:
Q  215 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 314  Q
    |||| |||| ||||||||||  |||||| | | |||||||| |||||| |||||||||||||||  ||||||| || || |||||| ||| ||||| |||    
T  10867 taactttttcagtaatttaagtttattagtattcattaatt-tttgcatatttaaatgtattattctaaactataattggaatgtgatataatatatagt 10965  T
Q  315 cagatttc 322  Q
    || |||||    
T  10966 caaatttc 10973  T

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