View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_65 (Length: 311)
Name: NF4445_low_65
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 37809333 - 37809431
Alignment:
| Q |
15 |
agatgttctttattgaatctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact |
113 |
Q |
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| T |
37809333 |
agatgttcttaattgaatctgtattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact |
37809431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 37646457 - 37646380
Alignment:
| Q |
32 |
tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat |
109 |
Q |
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| T |
37646457 |
tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat |
37646380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 37814386 - 37814463
Alignment:
| Q |
32 |
tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat |
109 |
Q |
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| T |
37814386 |
tctttattgtaattgcatgtagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat |
37814463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 37814480 - 37814547
Alignment:
| Q |
229 |
atgccaaactctagcatcaagatttttaatcaaactctcttagaacactttcgatccctagtatcaca |
296 |
Q |
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| T |
37814480 |
atgccaaactctagcatcaagattcttaatcaaactctctgagaacactttcaatccctagtatcaca |
37814547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 37646363 - 37646296
Alignment:
| Q |
229 |
atgccaaactctagcatcaagatttttaatcaaactctcttagaacactttcgatccctagtatcaca |
296 |
Q |
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| T |
37646363 |
atgccaaactctagcatcaagattcttaatcaaactctctgagaacactttcaatccatagtatcaca |
37646296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 37809461 - 37809529
Alignment:
| Q |
111 |
actaactgcctaactccctaactgtcatctgtt-agtaaagttagttagaatgcagtcagttagttaca |
178 |
Q |
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| T |
37809461 |
actaactgccgaactccctaactgtcagccgtttagaaaagttggttagaatgcaatcagttagttaca |
37809529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 51590193 - 51590226
Alignment:
| Q |
28 |
tgaatctttattgtaattgcatgtagcagaatgt |
61 |
Q |
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| T |
51590193 |
tgaatctttattgtaattgcatgtaacagaatgt |
51590226 |
T |
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