View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_66 (Length: 311)
Name: NF4445_low_66
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_66 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 8431570 - 8431501
Alignment:
| Q |
225 |
aatctgcattctgttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
294 |
Q |
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| T |
8431570 |
aatctgcattctgttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
8431501 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 8434986 - 8434908
Alignment:
| Q |
83 |
ggctttcatatatggactttggtgggaagaactttgttttgctctactcaaatgtggatgttgactagtattaaggaaca |
162 |
Q |
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| T |
8434986 |
ggctttaatataaggactttggtgggaagaactttgttttgttctactcaaatgtagatgttgacta-tattagggaaca |
8434908 |
T |
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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 8378317 - 8378248
Alignment:
| Q |
79 |
tagaggctttcatatatggactttggtgggaagaactttgttttgctctactcaaatgtggatgttgact |
148 |
Q |
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| T |
8378317 |
tagaggcttcaatatatggacattggtgggaagaacttggttttgttttactcaaatgtggatgttgact |
8378248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 8339337 - 8339289
Alignment:
| Q |
17 |
attcatatcatattctttcattcctttttgtcatcatcatttggccttt |
65 |
Q |
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| T |
8339337 |
attcaaatcatattctttcattcctttttgtcatcatcatttggccttt |
8339289 |
T |
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Target: scaffold0060 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 75437 - 75515
Alignment:
| Q |
83 |
ggctttcatatatggactttggtgggaagaactttgttttgctctactcaaatgtggatgttgactagtattaaggaaca |
162 |
Q |
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| T |
75437 |
ggctttaatataaggactttggtgggaagaactttgttttgttctactcaaatgtagatgttgacta-tattagggaaca |
75515 |
T |
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Target: scaffold0060; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 75920 - 75977
Alignment:
| Q |
237 |
gttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
294 |
Q |
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| T |
75920 |
gttgttctttataacttcttgtactcttaatttcaattaatgataagatttatcattt |
75977 |
T |
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