View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_68 (Length: 311)
Name: NF4445_low_68
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 38781789 - 38781507
Alignment:
| Q |
13 |
gagatgaaacatagagatacttacaaaccattgtttattatatgtcaacatccaaatagcctactagtaatagctaccgtgtgggtcctgatcaatcttc |
112 |
Q |
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| T |
38781789 |
gagataaaacatagagatacttacaaaccattgtttattatatgtcaacatccaaatagcctactagtaatagctgccgtgtgggtcctgatcaatcttc |
38781690 |
T |
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| Q |
113 |
acctatccgatcatgtgcagcttgacaaaacagtaaggttgccttataattttactcatgatgataatttgagtccagaaacataagcatgttttcctgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38781689 |
acctatccgatcatgtgcagcttgacaaaacagtaaggttgccttataattttactcatgatgataatttgagtccagaaacataagcatgttttcctgt |
38781590 |
T |
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| Q |
213 |
ttcggtttctagaatccgaccgggaagcaaaatatctggagggtacgtaagaggtatgggnnnnnnngaatttcacttatttt |
295 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
38781589 |
ttcggtttctagaatccaaccgggaagcaaaatatccggagggtacgtaagaggtatgggaaaaaaagaatttcacttatttt |
38781507 |
T |
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