View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_7 (Length: 695)
Name: NF4445_low_7
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 632; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Complemental strand, 796010 - 795343
Alignment:
| Q |
11 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
796010 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
795911 |
T |
|
| Q |
111 |
agatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggttgagtatgtggcagtaa |
210 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
795910 |
ggatatatatttactgttggtactcgatcagttagttggatgtcgcgaatacaaaagattgttgctttatccacaacagaggttgagtatgtggcagtaa |
795811 |
T |
|
| Q |
211 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
795810 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaaagtgctttgtacagtgatagtcagagtgcgat |
795711 |
T |
|
| Q |
311 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
795710 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
795611 |
T |
|
| Q |
411 |
attaaaattcaaggaagtaagaatcctgcagatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
795610 |
attaaaattcaaggaagtaagaatcccgcagatatgttaacaaaggtggtgactatcgacaaactgaagttgtgctcaactttagttggtctgctagagt |
795511 |
T |
|
| Q |
511 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
795510 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
795411 |
T |
|
| Q |
611 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
795410 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
795343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 8273778 - 8274445
Alignment:
| Q |
11 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8273778 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgctggtgaggttgatcaccgaagaagtacaact |
8273877 |
T |
|
| Q |
111 |
agatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggttgagtatgtggcagtaa |
210 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8273878 |
ggatatatatttactattggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggctgagtatgtggcagtaa |
8273977 |
T |
|
| Q |
211 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8273978 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaaagtgctttgtacagtgatagtcagagtgcgat |
8274077 |
T |
|
| Q |
311 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8274078 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtctttgttatcacttcattagatctctacttgaggacgaggttctaacattg |
8274177 |
T |
|
| Q |
411 |
attaaaattcaaggaagtaagaatcctgcagatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8274178 |
attaaaattcaaggaagtaagaatcccgcagatatgttaacaaaggtggtgactattgacaaactgaagttgtgctcaactttagttggtttgctagagt |
8274277 |
T |
|
| Q |
511 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8274278 |
aagaggccggagaaggctgctgcatgatcaggtgcgaagaccgattgaaatcaatcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
8274377 |
T |
|
| Q |
611 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8274378 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
8274445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 579 - 678
Target Start/End: Complemental strand, 800197 - 800098
Alignment:
| Q |
579 |
attgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
800197 |
attgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
800098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 581 - 678
Target Start/End: Original strand, 8269633 - 8269730
Alignment:
| Q |
581 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8269633 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
8269730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 19944761 - 19945428
Alignment:
| Q |
11 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19944761 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgctggtgaggttgatcaccgaagaagtacaact |
19944860 |
T |
|
| Q |
111 |
agatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggttgagtatgtggcagtaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19944861 |
ggatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggctgagtatgtggcagtaa |
19944960 |
T |
|
| Q |
211 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgat |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19944961 |
cagaagccagcaaataattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaaagtgctttgtacagtgatagtcagagtgcgat |
19945060 |
T |
|
| Q |
311 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19945061 |
acatctggcaaagaattcaacatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
19945160 |
T |
|
| Q |
411 |
attaaaattcaaggaagtaagaatcctgcagatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19945161 |
attaaaattcaaggaagtaagaatcccgcaaatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtctgctagagt |
19945260 |
T |
|
| Q |
511 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19945261 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
19945360 |
T |
|
| Q |
611 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19945361 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
19945428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 579 - 678
Target Start/End: Original strand, 19940575 - 19940674
Alignment:
| Q |
579 |
attgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19940575 |
attgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttatt |
19940674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 31621146 - 31621021
Alignment:
| Q |
157 |
gaatacaaaagattgttgctttatccactacagaggttgagtatgtggcagtaacagaagccagcaaagaattgatatggcttcaaggattgttaacaga |
256 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
31621146 |
gaatacaaaatattgttactttatccactacaaaggttgagtatgtagcagtaacaaaagccaacaaagaattcatatggcttcaaggatcgttaataga |
31621047 |
T |
|
| Q |
257 |
gttaggattcatgcaggagaaatgtg |
282 |
Q |
| |
|
| | |||||||| |||||||| |||| |
|
|
| T |
31621046 |
gatgggattcatccaggagaagtgtg |
31621021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 31621230 - 31621166
Alignment:
| Q |
23 |
tttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgagg |
87 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
31621230 |
tttgtactttggcgaaatagagataaaagtagaaggctatgtagatgctgactttgttggtgagg |
31621166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 10434861 - 10434920
Alignment:
| Q |
281 |
tgctttgtacagtgatagtcagagtgcgatacatctggcaaagaattcagcatttcattc |
340 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
10434861 |
tgctttgtacaatgatagtcagagtgtgatacatctagcaaagaattcaatatttcattc |
10434920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 6692811 - 6693478
Alignment:
| Q |
11 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6692811 |
cacagagaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaact |
6692910 |
T |
|
| Q |
111 |
agatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggttgagtatgtggcagtaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6692911 |
ggatatatatttactgttggtactggagcagttagttggatgtcgcgaatacaaaagattgttgctttatccactacagaggctgagtatgtggcagtat |
6693010 |
T |
|
| Q |
211 |
cagaagccagcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgat |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6693011 |
cagaagccatcaaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgat |
6693110 |
T |
|
| Q |
311 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6693111 |
acatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattg |
6693210 |
T |
|
| Q |
411 |
attaaaattcaaggaagtaagaatcctgcagatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
6693211 |
attaaaattcaaggaagtaagaatcccgcagatatgttaacaaaggtggtgactatcgacaaactgaagttgtgctcaactttagttggcctgctagagt |
6693310 |
T |
|
| Q |
511 |
aagaggccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
610 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6693311 |
aagagaccggagaaggctgctgcatgatcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggtgaacattgtgtaaggacccacat |
6693410 |
T |
|
| Q |
611 |
gcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
6693411 |
gcacgtgggataaccagccaaaacaatttgttgaaacaaattgtcacacaaagtctcatgcatttatt |
6693478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 581 - 678
Target Start/End: Original strand, 6688641 - 6688738
Alignment:
| Q |
581 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6688641 |
tgttggtgaacattgtttaaggacccacatgcacgtgggataaccagccaaagcaatttactgaagcaaattgtcacacaaagtctcatgcatttatt |
6688738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 452 - 590
Target Start/End: Complemental strand, 11892566 - 11892428
Alignment:
| Q |
452 |
aaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagtaagaggccggagaaggctgctgcatgatcaggtgtgaagac |
551 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
11892566 |
aaaggtggtgactatcgacaaactgaagttgtgctcaacttcagttgggttgttagagtaagagaccgacgaaggctgctgcatgatcaggtgtgaagac |
11892467 |
T |
|
| Q |
552 |
cgattgaaatcagtcttcaagtgggagattgttggtgaa |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11892466 |
cgattgaaatcagtcttcaagtgggagattgttggtgaa |
11892428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 452 - 557
Target Start/End: Complemental strand, 11891820 - 11891715
Alignment:
| Q |
452 |
aaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagtaagaggccggagaaggctgctgcatgatcaggtgtgaagac |
551 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| | ||| ||||||||||| ||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
11891820 |
aaaggtggtgactatcgacaaactgaagttgtgctcaacttcagttcggttgttagagtaagagaccgacgaaggctgctgcatgataaggtttgaagac |
11891721 |
T |
|
| Q |
552 |
cgattg |
557 |
Q |
| |
|
|||||| |
|
|
| T |
11891720 |
cgattg |
11891715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 581 - 678
Target Start/End: Original strand, 26199352 - 26199448
Alignment:
| Q |
581 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgttacacaaagtctcatgcatttatt |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
26199352 |
tgttggtgaacattgtgtaaggacccacatgcacgtgg-ataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatatatt |
26199448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 38110040 - 38110121
Alignment:
| Q |
296 |
tagtcagagtgcgatacatctggcaaagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcatt |
377 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||| | |||||||| ||||||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
38110040 |
tagtcagagtgtgatacatttggtaatgaatttaaaatttcatttgagaacaaatcacattggtcttcattatcatttcatt |
38110121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 587
Target Start/End: Original strand, 38110274 - 38110321
Alignment:
| Q |
540 |
aggtgtgaagaccgattgaaatcagtcttcaagtgggagattgttggt |
587 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
38110274 |
aggtgtcaagaccgatcgaaatcagtcttcgagtggaagattgttggt |
38110321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 221 - 584
Target Start/End: Complemental strand, 37913101 - 37912737
Alignment:
| Q |
221 |
caaagaattgatatggcttcaaggattgttaacagagttaggattcatgcaggagaaatgtgctttgtacagtgatagtcagagtgcgatacatctggca |
320 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||| |||| | ||||| ||||| | |||||||||||||||||||| |||||| ||||||||| || |
|
|
| T |
37913101 |
caaagagttgatatgaattcaagggttgttaacatagttgagtttcatctaggagcagagtgctttgtacagtgatagttagagtgtgatacatctcaca |
37913002 |
T |
|
| Q |
321 |
aagaattcagcatttcattcgagaacaaagcacataggtcttcgttatcacttcattagatctctacttgaggacgaggttctaacattgattaaaattc |
420 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| | |||||| |||||||| | | |||||| |||||||| ||||| |||||||||| || ||| |
|
|
| T |
37913001 |
aagaattcaacatttcattcaagaacaaagcacattgatcttcgctatcactttgtcacatctctgcttgaggatgaggtgctaacattgaagaagattg |
37912902 |
T |
|
| Q |
421 |
aaggaagtaagaatcctgcagatatgttaacaaaggtggtgactatcgacaaactaaagttgtgctcaactttagttggtttgctagagtaagaggccgg |
520 |
Q |
| |
|
|| |||||| || | || | ||||| | ||| ||||| || ||||||||| | ||||||||||||||||| |||| ||||||||||| || || |
|
|
| T |
37912901 |
aaagaagtaggacctcaacaaacatgttgagaaaagtggtaaccatcgacaaattgaagttgtgctcaacttttgttgtcctgctagagtaacagaccaa |
37912802 |
T |
|
| Q |
521 |
agaaggctgctgcatga-tcaggtgtgaagaccgattgaaatcagtcttcaagtgggagattgtt |
584 |
Q |
| |
|
||||| | ||||||| | |||| ||||||| |||| |||||||| |||||| ||||||||| |
|
|
| T |
37912801 |
agaagatcgttgcatgattaaggtatgaagactaattgcaatcagtcgtcaagtatgagattgtt |
37912737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 13396714 - 13396600
Alignment:
| Q |
16 |
agaaatgtttgtactttggcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaactagata |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||| ||||||||| | | | | || |
|
|
| T |
13396714 |
agaaatgtttgtactttagcaaaggagagataaaagtagaagaatatgtagttgttgactttgctagtgaggttgatcagcgaagaagttctattggtta |
13396615 |
T |
|
| Q |
116 |
tatatttactgttgg |
130 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
13396614 |
tatatttattgttgg |
13396600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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