View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_70 (Length: 309)
Name: NF4445_low_70
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_70 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 24318234 - 24318499
Alignment:
| Q |
25 |
ccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
124 |
Q |
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| T |
24318234 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaagcccatgctgcatcatgtttc |
24318333 |
T |
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| Q |
125 |
ttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatcttacgcatgaggtaccagttgaagtcag |
224 |
Q |
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| T |
24318334 |
ttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatacgtatgaggtattggctgaagtcag |
24318433 |
T |
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| Q |
225 |
gtttgatggtgacggatgctttactctatccatcaagataaatggggattatatcggacaatgatt |
290 |
Q |
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| T |
24318434 |
gtttgatggtgaaggatgctttactctacccatcgagataaatggggatgatatcgaacaaggatt |
24318499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 24188100 - 24188243
Alignment:
| Q |
1 |
aagacaagcaaaagcgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaac |
100 |
Q |
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| T |
24188100 |
aagacaagcaaaagcgagaatgtgccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaac |
24188199 |
T |
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| Q |
101 |
aaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
144 |
Q |
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| T |
24188200 |
aaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
24188243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 17430579 - 17430463
Alignment:
| Q |
70 |
gtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaac |
169 |
Q |
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| T |
17430579 |
gtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccgatctatccgaggaagaac |
17430480 |
T |
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| Q |
170 |
tcatattactgactagc |
186 |
Q |
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| T |
17430479 |
tcatatcactaactagc |
17430463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 3398954 - 3399117
Alignment:
| Q |
88 |
gaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcg |
187 |
Q |
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| T |
3398954 |
gaaacggtcgaacagattccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcg |
3399053 |
T |
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| Q |
188 |
agtgtcatcttacgcatgaggtaccagttgaagtcaggtttgatggtgacggatgctttactct |
251 |
Q |
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| T |
3399054 |
aatttcatcacacgtacgaggtaccggctgtagtcaggtttgatggtgaaggttgctttactct |
3399117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 24537233 - 24537175
Alignment:
| Q |
15 |
cgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaa |
73 |
Q |
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| T |
24537233 |
cgagaacgtgccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 233248 - 233057
Alignment:
| Q |
99 |
acaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatctt |
198 |
Q |
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| T |
233248 |
acaaagtccatgttgcatcaagtttcttcaagaattattgaagactgatgccaatctatcggaggaagaactcatgtcaatgactagtgaatgtgagggc |
233149 |
T |
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| Q |
199 |
acgcatgaggtaccagttgaagtcaggtttgatggtgacggatgctttactctatccatcaagataaatggggattatatcggacaatgatt |
290 |
Q |
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| T |
233148 |
acatacgaggtaccggccaaagtcaggttttatggtgaatgatgctttactttacccatcaaggttaatggagaatatatcgggcaaggatt |
233057 |
T |
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