View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_72 (Length: 303)

Name: NF4445_low_72
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_72
NF4445_low_72
[»] chr3 (36 HSPs)
chr3 (21-287)||(9841738-9842004)
chr3 (18-292)||(10034878-10035152)
chr3 (21-287)||(10430964-10431230)
chr3 (21-292)||(11778905-11779176)
chr3 (21-292)||(11772109-11772380)
chr3 (22-287)||(10360725-10360990)
chr3 (21-287)||(9980346-9980612)
chr3 (18-292)||(10129797-10130071)
chr3 (22-287)||(10520365-10520630)
chr3 (21-199)||(10666503-10666681)
chr3 (18-287)||(10263581-10263850)
chr3 (21-284)||(10531664-10531927)
chr3 (21-214)||(9852830-9853023)
chr3 (21-214)||(10583535-10583728)
chr3 (114-287)||(10583393-10583566)
chr3 (159-287)||(9852619-9852747)
chr3 (21-277)||(10680469-10680725)
chr3 (22-161)||(10372835-10372974)
chr3 (165-292)||(10503457-10503584)
chr3 (21-214)||(10091948-10092141)
chr3 (21-214)||(10198830-10199023)
chr3 (226-287)||(10372970-10373031)
chr3 (150-289)||(10091666-10091805)
chr3 (150-289)||(10198548-10198687)
chr3 (21-172)||(10503646-10503797)
chr3 (33-287)||(10086056-10086309)
chr3 (33-287)||(10192976-10193229)
chr3 (243-286)||(10666347-10666390)
chr3 (25-76)||(11242500-11242551)
chr3 (234-287)||(13852579-13852632)
chr3 (239-273)||(10892212-10892246)
chr3 (239-273)||(11128158-11128192)
chr3 (239-273)||(11157149-11157183)
chr3 (239-275)||(8864190-8864226)
chr3 (127-199)||(10091894-10091966)
chr3 (127-199)||(10198776-10198848)
[»] scaffold0083 (1 HSPs)
scaffold0083 (21-287)||(54525-54791)
[»] chr4 (1 HSPs)
chr4 (21-286)||(17849846-17850111)
[»] chr2 (1 HSPs)
chr2 (21-292)||(26909763-26910034)
[»] chr8 (2 HSPs)
chr8 (30-292)||(44954592-44954854)
chr8 (157-287)||(11487909-11488039)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 9842004 - 9841738
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| | ||   |||||||||||||||||||    
T  9842004 agggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagtcagggagg 9841905  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||||||||||||  ||||||| |  || ||| |||||||||| || ||||| |||||||||||||||| ||||||| ||||||||||||    
T  9841904 ctgtcttctggtaatgactcaagcttttcacattgaaacaatataagtgatttcagcgaggaagggaggcagttttctggcaatgactcaagctgtggac 9841805  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    ||  | |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  9841804 aaaacgaaaaatcgagatattggagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 9841738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 10035152 - 10034878
Alignment:
Q  18 gaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcaggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||  ||||||||||| |    
T  10035152 gaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgggcaattccaaatgcagagttccctaagagagtcagtg 10035053  T
Q  118 aggctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtg 217  Q
    ||||||||||||||||||||||||||  ||| ||||| | | |||||||||||||| || ||||| |||||||||||||||| ||||| | |||| ||      
T  10035052 aggctgtcttctggtaatgactcaagctttttacaatcccacaatctaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgat 10034953  T
Q  218 gacaacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    |||||  | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10034952 gacaattccaaaaacagagagtttggagagaggagaggtgtcgaagcccatttccatcaaaggacttcatttcat 10034878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 10430964 - 10431230
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  | |||| || ||||||||||||||||    
T  10430964 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttgcttaagagagtcagggagg 10431063  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaatt-caaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtgga 219  Q
    |||||||||||||||||||||||  ||||||| || || ||||| ||||||||| || ||||| |||||||||||||||| ||||| | |||| ||   |    
T  10431064 ctgtcttctggtaatgactcaagcttttcacatttccacaaatc-aagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatca 10431162  T
Q  220 caacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    |||  | ||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  10431163 caaaaccaaaaacagagagtttggagagaggagaggtgtcgcagcccatttccatcaaaggacttcat 10431230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 11778905 - 11779176
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||| |||| || ||||||||| ||||||    
T  11778905 agggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggagg 11779004  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||| ||||||||||||||    |||||  |   ||||  ||||||||| |  ||||| |||||||||||||||| ||||||| | |||||| |||    
T  11779005 ctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgac 11779104  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    ||  | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  11779105 aattccaaaaatagagatattcgagagaggagaggtgtcgaagcccatttccatcgaaggacttcatttcat 11779176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 11772380 - 11772109
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||| |||| || ||||||||| ||||||    
T  11772380 agggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggagg 11772281  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||| ||||||||||||||    |||||  |   ||||  ||||||||| |  ||||| |||||||||||||||| ||||||| | |||||| |||    
T  11772280 ctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgac 11772181  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    ||  | |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  11772180 aattccaaaaatagagatattggagagaggagaggtgtcgaagcccatttccatcaaaagacttcatttcat 11772109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 10360725 - 10360990
Alignment:
Q  22 gggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggaggc 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |   | |||   ||||||| |||||||||||||||||    
T  10360725 gggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcagggaggc 10360824  T
Q  122 tgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggaca 221  Q
    |||||||||||||||| | |||  ||||||||    ||||| |||||||||| || ||||| ||||||||||||||||  |||||| |||||||| ||||    
T  10360825 tgtcttctggtaatgatttaagcttttcacaaccataaaatgtaagtgatttcagcgaggaagggaggcagttttctggtaatgactcaagctgtcgaca 10360924  T
Q  222 acccaaaaaata-gagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
      | |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  10360925 ttc-aaaaaatacgagatgttggagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 10360990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 9980612 - 9980346
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||   ||||||| |||||| |||||||||    
T  9980612 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggagg 9980513  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||||||||| ||  ||| |||||   |||||  ||||||||| || ||||| |||||||||||||||| ||||| | |||| ||| |||    
T  9980512 ctgtcttctggtaatgactctagctttttacaatcataaaattcaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgac 9980413  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    ||  ||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  9980412 aaaacaaaaaacagagactttggagagaggagaggtgtcgcagcccatttccatcaaaggacttcat 9980346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 10130071 - 10129797
Alignment:
Q  18 gaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcaggg 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||||   |||| |  |||||| ||||||    
T  10130071 gaaagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccttgaatgcacagttgcataagagaatcaggg 10129972  T
Q  118 aggctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtg 217  Q
    ||||||||||||||||||||||| ||  ||||||||| | ||||   ||||||||| || ||||| |||||||||||||||| ||||| | |||| ||      
T  10129971 aggctgtcttctggtaatgactctagcttttcacaatcccaaaagtcaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgat 10129872  T
Q  218 gacaacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    |||||  | ||||  |||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  10129871 gacaattccaaaagaagagatgttggagagagaagaggtgtcgaagcccatttccatcaaaggacttcatttcat 10129797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 10520630 - 10520365
Alignment:
Q  22 gggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggaggc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||  ||  ||||||||||||||||    
T  10520630 gggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattcccaaatgagcagtctcttcagagagtcagggaggc 10520531  T
Q  122 tgtcttctggtaatgactcaagtctttcacaatt-caaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||||| | |||  ||||||| || || ||||| |||| |||| || ||||| |||||||||||||||| ||||| | |||| |||  ||    
T  10520530 tgtcttctggtaatgatttaagcttttcacatttccacaaatc-aagtaatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttcac 10520432  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    || || |||||  ||||  || ||||||||||||||| |||||||| ||||||||||||||||||||    
T  10520431 aatcccaaaaacggagacgttggagagaggagaggtgacgaagcccttttccatcaaaggacttcat 10520365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 10666681 - 10666503
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||   ||||||| ||||||||||||||||    
T  10666681 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattcctcaatgtgcagttccttaagagagtcagggagg 10666582  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaa-aatctaagtgatttgagggaggaggggaggcagttttctg 199  Q
    |||||||||||||||||||||||  |||||| ||||||| |||  ||||||||| || ||||| ||||||| || |||||    
T  10666581 ctgtcttctggtaatgactcaagcttttcac-attcaaacaattcaagtgatttcagcgaggaagggaggctgtcttctg 10666503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 10263850 - 10263581
Alignment:
Q  18 gaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcaggg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||   |   || | ||||   | |||||||  ||||    
T  10263850 gaaagggatgtgagcaattttggactaatgttccttccttttatacctttcttctaacaatgggcaaaactcgatagcgagtagtttaagagaggaaggg 10263751  T
Q  118 aggctgtcttctggtaatgactcaagtctttcacaattcaaa-aatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgt 216  Q
    ||||||||||||||||||||||| ||  ||||||| | |||  |||  ||||||||| || ||||| |||||||||||||||| ||||| | |||| ||     
T  10263750 aggctgtcttctggtaatgactctagcttttcaca-tccaagcaatagaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttga 10263652  T
Q  217 ggacaacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
     |||||   |||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||    
T  10263651 tgacaaaagaaaaaacagagatattggagagaggagaggtgttgaagcccatttccatcaaaggacttcat 10263581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 10531927 - 10531664
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||   |   || ||||||   | |||||||  |||||||    
T  10531927 agggatgtgagaaattttggaccaattttccttccttttatacctttcttctaacaatgggcaaaactcgatagtgagtagtttaagagaggaagggagg 10531828  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    ||||||||||||||||||||||||||| ||||| || |||||  |||||| || || ||||| |||||||| ||||||| ||||||| ||||||     |    
T  10531827 ctgtcttctggtaatgactcaagtcttacacaactcgaaaattgaagtgacttcagcgaggaagggaggcaattttctggcaatgactcaagctccaagc 10531728  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggactt 284  Q
    ||   | ||| |  ||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  10531727 aattaagaaagtgaagatttttgagagaggagaggtgtcgaagtccatttccttcaaatgactt 10531664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 9853023 - 9852830
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||   |||  ||  || ||||||||||||    
T  9853023 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatccataaatgtccagtctcttcagtgagtcagggagg 9852924  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagct 214  Q
    |||||||||||||||||||| ||  ||||||| ||| | |||  ||||||||| || || || ||||||||||||||||  |||||| ||||||    
T  9852923 ctgtcttctggtaatgactctagcttttcacatttccacaattcaagtgatttcagcgatgatgggaggcagttttctggtaatgactcaagct 9852830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 10583728 - 10583535
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||       ||||| |||  |||||||||||||||||||    
T  10583728 agggatgtgagcaattttggaccaatattcattccttttatacctttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggagg 10583629  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagct 214  Q
    |||||||||||||||||||| |||||| |||||  || ||||  ||||||||| || ||||| ||||||| || |||||  |||||||||||||    
T  10583628 ctgtcttctggtaatgactcgagtcttacacaacccacaaattgaagtgatttcagcgaggaagggaggctgtcttctggtaatgacccaagct 10583535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 10583566 - 10583393
Alignment:
Q  114 agggaggctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagc 213  Q
    ||||||||||||||||||||||||| ||||  ||||||||| || ||||  ||||||||| || ||||| |||||||||||||||| ||||| | ||||     
T  10583566 agggaggctgtcttctggtaatgacccaagcttttcacaatccataaatgaaagtgatttcagtgaggaagggaggcagttttctggcaatgtctcaagt 10583467  T
Q  214 tgtggacaacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    ||  |||||   |||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  10583466 tgatgacaaatgaaaaaacagagatattggagagaggagaggtgtcgcagcccatttccatcaaaggacttcat 10583393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 9852747 - 9852619
Alignment:
Q  159 aaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaatagagattttcgagagaggagaggtgt 258  Q
    |||| |||||||||| || ||||| |||| ||||||||||| |||||||||||||||| ||||||||  ||||||||||| || ||||||| ||||||||    
T  9852747 aaatttaagtgatttcagtgaggaagggaagcagttttctggcaatgacccaagctgttgacaacccgcaaaatagagatattggagagagaagaggtgt 9852648  T
Q  259 cgaagcccatttccatcaaaggacttcat 287  Q
    |||||||||||||||||||||||||||||    
T  9852647 cgaagcccatttccatcaaaggacttcat 9852619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 10680725 - 10680469
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||   |   || ||||||   | |||||||  |||||||    
T  10680725 agggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgggcaaaacttgatagtgagtagtttaagagaggaagggagg 10680626  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    ||||||||||||||  ||||||||||| ||||| ||||||||  ||||||||| || ||||| |||||||| |||||||  |||||| ||||||  |  |    
T  10680625 ctgtcttctggtaacaactcaagtcttacacaactcaaaaattgaagtgatttcagcgaggaagggaggcaattttctggaaatgactcaagctccgagc 10680526  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaa 277  Q
    ||   | ||| |  ||||||| ||||||||||||||||||||| |||||||| ||||    
T  10680525 aattaagaaagttaagatttttgagagaggagaggtgtcgaagtccatttccttcaa 10680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 10372835 - 10372974
Alignment:
Q  22 gggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggaggc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |  ||||   |||  ||  ||||||  ||||||||    
T  10372835 gggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggc 10372934  T
Q  122 tgtcttctggtaatgactcaagtctttcacaattcaaaaa 161  Q
    ||||||||||||||||||||||  |||||||||| |||||    
T  10372935 tgtcttctggtaatgactcaagcttttcacaattaaaaaa 10372974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 10503584 - 10503457
Alignment:
Q  165 aagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaatagagattttcgagagaggagaggtgtcgaagc 264  Q
    |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| |||||   | ||| |  |||||||||||||||||||  |||||||||    
T  10503584 aagtaatttcagcgaggaagggaggcagttttctggcaatgactcaagctgtagacaattaagaaattcaagattttcgagagaggagatttgtcgaagc 10503485  T
Q  265 ccatttccatcaaaggacttcatctcat 292  Q
    ||||||||||||||||||||||| ||||    
T  10503484 ccatttccatcaaaggacttcatttcat 10503457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 10092141 - 10091948
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |  ||||   ||      ||||||   |||||||    
T  10092141 agggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaagggagg 10092042  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagct 214  Q
    ||||||||||||||||| |||||  ||| |||||     |||||||||||||| || ||||| ||||||||||| ||||  |||||| ||||||    
T  10092041 ctgtcttctggtaatgaatcaagcattttacaatcactcaatctaagtgatttcagcgaggacgggaggcagttgtctggaaatgactcaagct 10091948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 10199023 - 10198830
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |  ||||   ||      ||||||   |||||||    
T  10199023 agggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaagggagg 10198924  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagct 214  Q
    ||||||||||||||||| |||||  ||| |||||     |||||||||||||| || ||||| ||||||||||| ||||  |||||| ||||||    
T  10198923 ctgtcttctggtaatgaatcaagcattttacaatcactcaatctaagtgatttcagcgaggacgggaggcagttgtctggaaatgactcaagct 10198830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 10372970 - 10373031
Alignment:
Q  226 aaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10372970 aaaaaatagagatttttgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 10373031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 10091805 - 10091666
Alignment:
Q  150 acaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaatagagattttcgagagag 249  Q
    ||||| || ||||| ||||| ||| || ||||| |||||||||||||||| |||||||  ||||||| ||||     | |||| ||||  || |||||||    
T  10091805 acaatccacaaatcgaagtgttttcagcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagag 10091706  T
Q  250 gagaggtgtcgaagcccatttccatcaaaggacttcatct 289  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10091705 gagaggtgtcgaagcccatttccatcaaaggacttcatct 10091666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 10198687 - 10198548
Alignment:
Q  150 acaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaatagagattttcgagagag 249  Q
    ||||| || ||||| ||||| ||| || ||||| |||||||||||||||| |||||||  ||||||| ||||     | |||| ||||  || |||||||    
T  10198687 acaatccacaaatcgaagtgttttcagcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagag 10198588  T
Q  250 gagaggtgtcgaagcccatttccatcaaaggacttcatct 289  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10198587 gagaggtgtcgaagcccatttccatcaaaggacttcatct 10198548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 10503797 - 10503646
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||| ||| |   |||| | |||  || |||||| ||||| |||    
T  10503797 agggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaatgttgggcatctttgaatgatcagtagcttaagagaatcaggaagg 10503698  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatt 172  Q
    ||||||||||||||||| | |||  ||||||||    |||||||||||||||    
T  10503697 ctgtcttctggtaatgagtaaagcttttcacaaccataaaatctaagtgatt 10503646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 287
Target Start/End: Complemental strand, 10086309 - 10086056
Alignment:
Q  33 aattttggaccaatgttccttccttttatacctttcttctaacaatgg-acatttccaaatggtgagttcctcaagagagtcagggaggctgtcttctgg 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || | |  | | | || | ||   ||  ||||| |||||||||| |||||| ||    
T  10086309 aattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaatacga-tgctcagacgcttcagagaatcagggaggcagtcttccgg 10086211  T
Q  132 taatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaa 231  Q
    |||||| ||||||||||||||| || ||| |  ||||||||| || ||||| || | ||| ||||| |  |||| | |||| ||| |||||     |||     
T  10086210 taatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaaggaacgcaattttcaggaaatggctcaagttgttgacaattacgaaag 10086111  T
Q  232 tagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    |  |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  10086110 tgaagattt-cgagaaaggagaggtgttgaagcccatttccatcaaaggacttcat 10086056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 287
Target Start/End: Complemental strand, 10193229 - 10192976
Alignment:
Q  33 aattttggaccaatgttccttccttttatacctttcttctaacaatgg-acatttccaaatggtgagttcctcaagagagtcagggaggctgtcttctgg 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || | |  | | | || | ||   ||  ||||| |||||||||| |||||| ||    
T  10193229 aattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaatacga-tgcttagacgcttcagagaatcagggaggcagtcttccgg 10193131  T
Q  132 taatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaa 231  Q
    |||||| ||||||||||||||| || ||| |  ||||||||| || ||||| || | ||| ||||| |  |||| | |||| ||| |||||     |||     
T  10193130 taatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaaggaacgcaattttcaggaaatggctcaagttgttgacaattacgaaag 10193031  T
Q  232 tagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    |  |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  10193030 tgaagattt-cgagaaaggagaggtgttgaagcccatttccatcaaaggacttcat 10192976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 10666390 - 10666347
Alignment:
Q  243 gagagaggagaggtgtcgaagcccatttccatcaaaggacttca 286  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  10666390 gagagaggagaggtgtagaagcccatttccattaaaggacttca 10666347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 11242500 - 11242551
Alignment:
Q  25 atgtgagcaattttggaccaatgttccttccttttatacctttcttctaaca 76  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||||||    
T  11242500 atgtgagctattttggaccaatgttcctgcttttgatacctttcttctaaca 11242551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 13852579 - 13852632
Alignment:
Q  234 gagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    |||||| | |||||||||||| |||||||||||||||||||| || ||||||||    
T  13852579 gagattgttgagagaggagagatgtcgaagcccatttccatcgaaagacttcat 13852632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 10892246 - 10892212
Alignment:
Q  239 tttcgagagaggagaggtgtcgaagcccatttcca 273  Q
    |||| ||||||||||||||||||||||||||||||    
T  10892246 tttccagagaggagaggtgtcgaagcccatttcca 10892212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 11128158 - 11128192
Alignment:
Q  239 tttcgagagaggagaggtgtcgaagcccatttcca 273  Q
    |||| ||||||||||||||||||||||||||||||    
T  11128158 tttcaagagaggagaggtgtcgaagcccatttcca 11128192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 11157149 - 11157183
Alignment:
Q  239 tttcgagagaggagaggtgtcgaagcccatttcca 273  Q
    |||| ||||||||||||||||||||||||||||||    
T  11157149 tttccagagaggagaggtgtcgaagcccatttcca 11157183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 8864226 - 8864190
Alignment:
Q  239 tttcgagagaggagaggtgtcgaagcccatttccatc 275  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  8864226 tttccagagaggagaggtatcgaagcccatttccatc 8864190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 10091966 - 10091894
Alignment:
Q  127 tctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctg 199  Q
    ||||| |||||||||||  |||||||||||  ||||| ||||||||| || ||  | ||||||||||||||||    
T  10091966 tctggaaatgactcaagcttttcacaattcgcaaatcgaagtgatttcagcgacaaagggaggcagttttctg 10091894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 10198848 - 10198776
Alignment:
Q  127 tctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctg 199  Q
    ||||| |||||||||||  |||||||||||  ||||| ||||||||| || ||  | ||||||||||||||||    
T  10198848 tctggaaatgactcaagcttttcacaattcgcaaatcgaagtgatttcagcgacaaagggaggcagttttctg 10198776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 54525 - 54791
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||   ||||||| |||||| |||||||||    
T  54525 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggagg 54624  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||||||||| ||  ||| |||||   |||||  ||||||||| || ||||| |||||||||||||||| ||||| | |||| ||| |||    
T  54625 ctgtcttctggtaatgactctagctttttacaatcataaaattcaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgac 54724  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcat 287  Q
    ||  ||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  54725 aaaacaaaaaacagagactttggagagaggagaggtgtcgcagcccatttccatcaaaggacttcat 54791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 17849846 - 17850111
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  || |||  |||||||   |||  || |||||||  |||||||    
T  17849846 agggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgccaaatgaccagtcgcttaagagaggaagggagg 17849945  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||| ||||||||||||| |||||   |||||  ||| ||||| || ||||| ||||||||||||| || ||||||| |||| ||| |||    
T  17849946 ctgtcttctggtaacgactcaagtcttttacaataacaaaattcaagcgatttcagtgaggaagggaggcagttttgtggcaatgactcaagttgttgac 17850045  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttca 286  Q
    |    | ||| |  ||| |||| |||||||| || |||||||| ||||||||||||||||| ||||    
T  17850046 agttaagaaagtcaagactttcaagagaggaaagatgtcgaagtccatttccatcaaaggagttca 17850111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 26910034 - 26909763
Alignment:
Q  21 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggagg 120  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||     | ||    ||   |||||||||||| ||||||    
T  26910034 agggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgggcaagatgacatttccagcatctcaagagagtcggggagg 26909935  T
Q  121 ctgtcttctggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggac 220  Q
    |||||||||||||||||||||||| | |||||     |||||  |||  |||| || ||||| ||||||||||||||||  ||||||   || |||  ||    
T  26909934 ctgtcttctggtaatgactcaagtttctcacagccataaaattgaagatatttcagcgaggaagggaggcagttttctggaaatgacttgagttgttcac 26909835  T
Q  221 aacccaaaaaatagagattttcgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    ||   | ||| |  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  26909834 aattaataaagtgaagattttggagagaggagaggcgtcgaagcccatttccatcaaaggacttcatttcat 26909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 44954592 - 44954854
Alignment:
Q  30 agcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatttccaaatggtgagttcctcaagagagtcagggaggctgtcttct 129  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |  || |||  |||||||   |||   | ||||||||  |||||||| ||||||    
T  44954592 agcaattttggaccaatgttccttccttctatacctttcttctgatacagggcatcgccaaatgaccagtcgattaagagagttggggaggctttcttct 44954691  T
Q  130 ggtaatgactcaagtctttcacaattcaaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaa 229  Q
    ||||| |||||||||| |||||||  |||||||  ||||||||| || ||||| || || ||||||||||  |||||| |||||||| ||||      ||    
T  44954692 ggtaacgactcaagtc-ttcacaaaacaaaaattgaagtgatttcagcgaggaaggaagacagttttctggaaatgactcaagctgttgacagttacgaa 44954790  T
Q  230 aatagagattttcgagagaggag-aggtgtcgaagcccatttccatcaaaggacttcatctcat 292  Q
    | | ||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| ||||    
T  44954791 agtggagattttcgagagaggagtaggtgttgaagcccatttccttgaaaggacttcatttcat 44954854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 11488039 - 11487909
Alignment:
Q  157 aaaaatctaagtgatttgagggaggaggggaggcagttttctgccaatgacccaagctgtggacaacccaaaaaatagagattttcgagagaggagaggt 256  Q
    |||||| |||||||| | || ||||| |||||| |||||||||  |||||| |||  |||  || || | ||||  | |||| || ||||||||||||||    
T  11488039 aaaaatttaagtgatatcagcgaggatgggaggaagttttctggtaatgactcaaagtgttcactacaccaaaatgaaagatctttgagagaggagaggt 11487940  T
Q  257 gtcgaagcccatttccatcaaaggacttcat 287  Q
     |||||||||| |||||||| ||| ||||||    
T  11487939 atcgaagcccacttccatcatagggcttcat 11487909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University