View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_74 (Length: 301)
Name: NF4445_low_74
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_74 |
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| [»] scaffold1763 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 28974736 - 28974596
Alignment:
| Q |
1 |
ttaaacttgatatgtctcagactcatcatcattgaatttaaaggttttccttacatagtgttcttaattctatgagttttccttctatcttttaattctc |
100 |
Q |
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||||||||||||||||| |||||| | || |||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
28974736 |
ttaaacttgatatgtcttagactcgtgat---tgaatttaaatgttttctttacatagtgttcttaattctatgagtttcccttccatcttttaattctc |
28974640 |
T |
|
| Q |
101 |
aaagggtttaagacaaggtaatcccttgtccccatacatcttag |
144 |
Q |
| |
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|||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
28974639 |
aaagtgtttatgacaaggtaatccctttcccccatacatcttag |
28974596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 150926 - 150962
Alignment:
| Q |
227 |
tagcgtgagttaacccacgcagcgtgagttaagtcac |
263 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||| |
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|
| T |
150926 |
tagcgtgagttaactcacgcaacgtgagttaagtcac |
150962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 24190937 - 24190973
Alignment:
| Q |
228 |
agcgtgagttaacccacgcagcgtgagttaagtcaca |
264 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| |
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| T |
24190937 |
agcgtgagttaactcacgcagcgtgacttaagtcaca |
24190973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 34849944 - 34850013
Alignment:
| Q |
62 |
tcttaattctatgagttttccttctatcttttaattctcaaagggtttaagacaaggtaatcccttgtccc |
132 |
Q |
| |
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|
| T |
34849944 |
tcttaattctatgagttttccttccatcttttatttctcaaagtg-ttaagacaaagtgatcccttttccc |
34850013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 19487575 - 19487539
Alignment:
| Q |
227 |
tagcgtgagttaacccacgcagcgtgagttaagtcac |
263 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
19487575 |
tagcatgagttaactcacgcagcgtgagttaagtcac |
19487539 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 7546187 - 7546141
Alignment:
| Q |
217 |
ttaactcacgtagcgtgagttaacccacgcagcgtgagttaagtcac |
263 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||||| |
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|
| T |
7546187 |
ttaactcacgtagcgtgacttaactcacacagcgtgagttaagtcac |
7546141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 40517597 - 40517556
Alignment:
| Q |
152 |
tctgctctttacctaaacggtttcgctcattcccaaaataaa |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| |
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|
| T |
40517597 |
tctgctctttacccaaacggtttcgctcattcctaaagtaaa |
40517556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 17636348 - 17636389
Alignment:
| Q |
152 |
tctgctctttacctaaacggtttcgctcattcccaaaataaa |
193 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||| |
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|
| T |
17636348 |
tctgctcattacctaaatggattcgctcattcccaaaataaa |
17636389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 9862966 - 9862925
Alignment:
| Q |
152 |
tctgctctttacctaaacggtttcgctcattcccaaaataaa |
193 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||| |
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|
| T |
9862966 |
tctgctctttacccaaatgatttcgctcattcccaaaataaa |
9862925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 32713259 - 32713223
Alignment:
| Q |
227 |
tagcgtgagttaacccacgcagcgtgagttaagtcac |
263 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |
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|
| T |
32713259 |
tagcgtgagttaactcacgcagcgtgacttaagtcac |
32713223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1763 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1763
Description:
Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 436 - 396
Alignment:
| Q |
154 |
tgctctttacctaaacggtttcgctcattcccaaaataaaa |
194 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
436 |
tgctctttacccaaatggtttcgctcattcccaaagtaaaa |
396 |
T |
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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 38372 - 38336
Alignment:
| Q |
152 |
tctgctctttacctaaacggtttcgctcattcccaaa |
188 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |
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|
| T |
38372 |
tctgctctttacccaaactgtttcgctcattcccaaa |
38336 |
T |
|
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 14029001 - 14028961
Alignment:
| Q |
153 |
ctgctctttacctaaacggtttcgctcattcccaaaataaa |
193 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||| |
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|
| T |
14029001 |
ctgctctttacttaaatggtttcgctcattcctaaaataaa |
14028961 |
T |
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