View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_75 (Length: 299)
Name: NF4445_low_75
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_75 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 299
Target Start/End: Complemental strand, 7804579 - 7804347
Alignment:
| Q |
68 |
tctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatctaaacacatgaatttttaatgtagaagctcaacattac |
167 |
Q |
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| T |
7804579 |
tctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatctaaacacgtgaatttcttatgtagaagttcaacattat |
7804480 |
T |
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| Q |
168 |
tttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttgaattacattttcattggcaagcattttgatgtaattg |
266 |
Q |
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| T |
7804479 |
tttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttgaattacattctcattggcaagcattttgatgtaattg |
7804380 |
T |
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| Q |
267 |
catatcaattgatatttctaatcatgttttact |
299 |
Q |
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| T |
7804379 |
catatcaattgatatttctaatcatgttttact |
7804347 |
T |
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