View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_76 (Length: 299)
Name: NF4445_low_76
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 7716616 - 7716345
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7716616 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
7716517 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7716516 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaa |
7716417 |
T |
|
| Q |
210 |
aatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagataggtttcata |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7716416 |
aatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagataggtttcata |
7716345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 7496360 - 7496631
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
7496360 |
catcatcattttgtgcgtcactcacagatatagctctctttcagttaaataatcttaaaggatggtgtaattgtagcgaagaagaaatctcaaggggttg |
7496459 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaa |
209 |
Q |
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| ||||||||||| | || ||||||| |||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7496460 |
tcgtcatcagtttcagagtcttgaaagattatcgattaaatattgtcctaatctagtttcaattccacaacacaaacatgtcaggaaagtaatgctttca |
7496559 |
T |
|
| Q |
210 |
aatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagataggtttcata |
281 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
7496560 |
aatgtcacagagaagatattacagcaagcagtcaatcattccaaagtagagtatcttgatataggtttcata |
7496631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 7720446 - 7720183
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7720446 |
catcatcattttgtgcgtcacttaaagatatatttctttttgggttaacaaatctaaaaggatggtgtaactgtagcgaagaagaaatctcaaggggttg |
7720347 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaa |
209 |
Q |
| |
|
||||||||||||| | || ||||||| |||||||||| | ||||| |||||||||||||||||||||||||| | || ||||| ||||||| ||| | |
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|
| T |
7720346 |
ttgtcatcagtttaacagtcttgaaagcttatgtatttctgtttgttgtaatctagtttcaattccacaacacacatatatcagggaagtaattcttaga |
7720247 |
T |
|
| Q |
210 |
aatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagatag |
273 |
Q |
| |
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| |||| ||||| ||| |||| || ||||||||||||||||||| |||||| |||| |||||| |
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|
| T |
7720246 |
gaggtcagagagacgatgttaccgccagcagtcaatcattccaaactagagtctcttgagatag |
7720183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 7127124 - 7126918
Alignment:
| Q |
66 |
aaaggatggtgtaactgtagcgaagaagaaatctcaaggggctgttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctag |
165 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| | || ||||||| |||| ||| || ||||| ||| |||| |
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|
| T |
7127124 |
aaaggatggtgtaagtgtagcgaagaagagatctcaaggggttgttgtcatcagtttcagagtcttgaaagattatcgattgaatattgtcctaacctag |
7127025 |
T |
|
| Q |
166 |
tttcaattccacaacacaaacatgtcaggaaagtaatgcttgaaaatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
7127024 |
tttcaattccacaacacaaacatgtcaggaatgtaattctttcaaatgtcacagagaagatattacaacaagcagtcaatcattcaaaagtagagtatct |
7126925 |
T |
|
| Q |
266 |
tcagata |
272 |
Q |
| |
|
| ||||| |
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|
| T |
7126924 |
taagata |
7126918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 7530086 - 7530348
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
7530086 |
catcatcatcttgtgcgtcactcacagatatagttctcattctgttaacaaatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7530185 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaa |
209 |
Q |
| |
|
||||||||||||| | || ||| ||| |||| ||| | ||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||| | |
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| T |
7530186 |
ttgtcatcagtttcagagtcttaaaagattatcaatttctggttgttgtaatctagtttcaattccacaacacaaacatatcagggaagtaattcttaga |
7530285 |
T |
|
| Q |
210 |
aatgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagata |
272 |
Q |
| |
|
| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7530286 |
gaggtcagagagacgatattacagcaagcagtcaatcattccaaagtagagtatcttcagata |
7530348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 7502552 - 7502811
Alignment:
| Q |
12 |
tcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctgtt |
111 |
Q |
| |
|
|||||||||||| ||| ||| ||| |||||| || ||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
7502552 |
tcatcattttgtgcgttactcacatatatatatccttctcagttaagaaatctaaaaggatggtgtaactgtagcaaagaagaaatctcaaggggttgta |
7502651 |
T |
|
| Q |
112 |
gtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagtaatgcttgaaaa |
211 |
Q |
| |
|
||||||||| | | || ||||| |||||| ||| | ||||||||||| |||||||||||||| ||||||| | || ||| |||||||| ||| ||| |
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| T |
7502652 |
gtcatcagtctcagagtattgaatacttatcgattgatgattgttataagctagtttcaattcctcaacacacatatatcaagaaagtaactcttagaaa |
7502751 |
T |
|
| Q |
212 |
tgtcacagagaagatattacagctagcagtcaatcattccaaagtagagtatcttcagat |
271 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
7502752 |
ggtcacagagaagatattaaagcaagtagtcaattattccaaagtagagtatcttcagat |
7502811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 7483961 - 7484151
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
7483961 |
catcatcattttgtgcgtcactcacatatatagttctctttcagttaaataatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7484060 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagta |
200 |
Q |
| |
|
||||||||||||| | || ||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||| | || ||||| ||||| |
|
|
| T |
7484061 |
ttgtcatcagtttcagagtcttgaaaccttattgattaatgattgttataagctagtttcaattccacaacacacatatatcagggaagta |
7484151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 7522018 - 7522208
Alignment:
| Q |
10 |
catcatcattttgtacgtcacttacagatatatttctttccgagttaaataatcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctg |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| |||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
7522018 |
catcatcattttgtgcgtcactcacatatatagttctctttcagttaactaatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttg |
7522117 |
T |
|
| Q |
110 |
ttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaattccacaacacaaacatgtcaggaaagta |
200 |
Q |
| |
|
||||||||||||| | || ||||||| |||| ||| | ||||||||||| |||||||||||||||||||||| | || ||||| ||||| |
|
|
| T |
7522118 |
ttgtcatcagtttcagagtcttgaaaccttaatgattaatgattgttataagctagtttcaattccacaacacacatatatcagggaagta |
7522208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 7723459 - 7723367
Alignment:
| Q |
81 |
tgtagcgaagaagaaatctcaaggggctgttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataatctagtttcaatt |
173 |
Q |
| |
|
|||||| |||||||||| |||| ||| |||||| |||||||| | || |||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
7723459 |
tgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt |
7723367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 7522233 - 7522281
Alignment:
| Q |
225 |
atattacagctagcagtcaatcattccaaagtagagtatcttcagatag |
273 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
7522233 |
atattacagcaagtagtcaatcattccaaactagaggatctacagatag |
7522281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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