View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_77 (Length: 299)
Name: NF4445_low_77
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 889420 - 889291
Alignment:
| Q |
50 |
tcaagaaatatttcattttcataattgaaccaaaccttctttagctaagagggccaaaagttgccaccaatcctcaaaacacttcattcataacagagcc |
149 |
Q |
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| T |
889420 |
tcaagaaatatttcattttcacaattgaaccaaaccttctttagctaagagggccaaaagttgccaccaatcctcaaaacacttcattcataacagagcc |
889321 |
T |
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| Q |
150 |
tttttctcttgaaactcaacctgcagtttt |
179 |
Q |
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| T |
889320 |
tttttctcttgaaactcaacctgcagtttt |
889291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 889261 - 889179
Alignment:
| Q |
217 |
taaagaactcaatatttaaagacattgattttgtctttgtccggttcattcttaaacttcacttgctaaaatttccctttgct |
299 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
889261 |
taaagaactcaatatttaaagacattaattttgtctttgtccggttcattcttaaacttcacttgctaaaatttccctttgct |
889179 |
T |
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