View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_8 (Length: 664)
Name: NF4445_low_8
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 32158301 - 32158724
Alignment:
| Q |
19 |
atttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatattatatgaacaggtgt |
118 |
Q |
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| T |
32158301 |
atttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatattatatgaacaggtgt |
32158400 |
T |
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| Q |
119 |
tagttagtgctatataaaatggaatgtcaaactcaaagtttttatttcataatatgaacacaacctactccaacatgttccaaagtatatacagacactg |
218 |
Q |
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| T |
32158401 |
tagttagtgctatataaaatggaatgtcaaactcaaagttgttatttcataatatgaacacaacctactccaacatgttccaaagtatatacagacactg |
32158500 |
T |
|
| Q |
219 |
atgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttggacatgggcaca |
318 |
Q |
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| T |
32158501 |
atgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttggacatgggcaca |
32158600 |
T |
|
| Q |
319 |
cattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgtgttatttgaa |
418 |
Q |
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| T |
32158601 |
cattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgtgttatttgaa |
32158700 |
T |
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| Q |
419 |
cgatcatttacatgacaacttacg |
442 |
Q |
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| T |
32158701 |
cgatcatttgcatgacaacttacg |
32158724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 525 - 653
Target Start/End: Original strand, 32158807 - 32158935
Alignment:
| Q |
525 |
ttatcacaaattaaatgtacaaatattatttctctatttttaacttaaacaagggaattatttatttgtttgacttatgagtacagtagtgtgccctacc |
624 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32158807 |
ttatcacagattaaatgtacaaatattatttctctacttttaacttaaacaagggaattatttatttgtttgacttatgagtacagaagtgtgccctacc |
32158906 |
T |
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| Q |
625 |
ctctggctttgcctcaagctctctgctcc |
653 |
Q |
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| T |
32158907 |
ctctggctttgcctcaagctctctgctcc |
32158935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 567
Target Start/End: Complemental strand, 6884943 - 6884901
Alignment:
| Q |
525 |
ttatcacaaattaaatgtacaaatattatttctctatttttaa |
567 |
Q |
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| T |
6884943 |
ttatcacaaattagttgtacaaatatcatttctctatttttaa |
6884901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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