View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_80 (Length: 296)
Name: NF4445_low_80
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 10294036 - 10294299
Alignment:
| Q |
16 |
caccaaattcatcttaatggtttgaccccatgttgtttacttttgtacacttttattttgagttaggaattaggatattgttcactttatttctattata |
115 |
Q |
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| T |
10294036 |
caccaaatttatcttaatggtttgaccccatgttgtttacttctgtacacttttattttgagttaggaattaggatattgttcactttatttctattata |
10294135 |
T |
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| Q |
116 |
agtttcctaattatatacaatgtgactatagacagacaaggccacccattaataagcagctattgatatcattcctctttcttggattaattgggtaagg |
215 |
Q |
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| T |
10294136 |
agtttcctaattatatacaatgtgactatagacagacaaggccacccattactaagcagctattcatgtcattcttctttcttggattaattgggtaagg |
10294235 |
T |
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| Q |
216 |
tccttgctatagcatctcatgtccnnnnnnncttatatactaatgacatgctagtgatacattt |
279 |
Q |
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| T |
10294236 |
tccttgctatagcatctcatgtcctttttttcttaaatactaatgacatgctagtgatacattt |
10294299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 115 - 279
Target Start/End: Original strand, 10301891 - 10302055
Alignment:
| Q |
115 |
aagtttcctaattatatacaatgtgactatagacagacaaggccacccattaataagcagctattgatatcattcctctttcttggattaattgggtaag |
214 |
Q |
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| T |
10301891 |
aagtttcttaattatatacaatgtgactatagacagacaagaccacccattactaagcagctattcatgtcattcttctttcttggattaattgggtaag |
10301990 |
T |
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| Q |
215 |
gtccttgctatagcatctcatgtccnnnnnnncttatatactaatgacatgctagtgatacattt |
279 |
Q |
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| T |
10301991 |
gtccttgctatagcatctcatgtcctttttttcttaaatactaatgacatgctagtgatacattt |
10302055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 10286118 - 10286329
Alignment:
| Q |
16 |
caccaaattcatcttaatggtttgaccccatgttgtttacttttgtacacttttattttgagttaggaattaggatattgttcactttatttctattata |
115 |
Q |
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||||||||| |||||||| |||||||||| ||| | ||||| | || ||||||| |||||||||||| |||||||| ||||||||||||| | || |
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| T |
10286118 |
caccaaattattcttaatgatttgaccccaagttttgtacttgcgaacgcttttat---gagttaggaattgggatattgctcactttatttctgattta |
10286214 |
T |
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| Q |
116 |
agtttcctaattatatacaatgtgactatagacagacaaggccacccattaataagcagctattgatatcattcctctttcttggattaattgggtaagg |
215 |
Q |
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| T |
10286215 |
agtattctaattata--caatgtgagtgtagacagacaaggccacccattactaagcagctattgatgtcattcttctttcttggattaaccgggtaagg |
10286312 |
T |
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| Q |
216 |
tccttgctatagcatct |
232 |
Q |
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| T |
10286313 |
tccttgctatagcatct |
10286329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 10281202 - 10281112
Alignment:
| Q |
136 |
tgtgactatagacagacaaggccacccattaataagcagctattgatatcattcctctttcttggattaattgggtaaggtccttgctata |
226 |
Q |
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| T |
10281202 |
tgtgactgcagacagacaaggccacctattactaagaagctattgatgtcattcttctttcttggattaactgggtaaggttcttgctata |
10281112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 10301824 - 10301885
Alignment:
| Q |
16 |
caccaaattcatcttaatggtttgaccccatgttgtttacttttgtacacttttattttgag |
77 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
10301824 |
caccaaattcatcttaatggtttgaccccatgttttgtactgctgtacacttttattttgag |
10301885 |
T |
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