View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_83 (Length: 290)
Name: NF4445_low_83
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 11172655 - 11172786
Alignment:
| Q |
146 |
gatgtaaaatatatttaatttggaatgtataaatatactttaatttgggaga-tacctatagattactctcaaaccattgtatctcccaatctctctcat |
244 |
Q |
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| T |
11172655 |
gatgtaaaatatatttaatttggaatgtatgaatatactttaatttgggagactacctatagattactctcaaaccattctatctcccaatctctctcat |
11172754 |
T |
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| Q |
245 |
tctagtgtatatagttcatataaatgtactct |
276 |
Q |
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| T |
11172755 |
tctagtgtatatagttcatataaatgtactct |
11172786 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 11172526 - 11172590
Alignment:
| Q |
17 |
agtaactaactcatattcttacaggaaacataaaagatacctacctccatttaacatcgagatgc |
81 |
Q |
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| T |
11172526 |
agtaactaactcatattcttacaggaaacataaaagatacctacctccatttaacatcaagatgc |
11172590 |
T |
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