View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_85 (Length: 288)

Name: NF4445_low_85
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_85
NF4445_low_85
[»] chr8 (11 HSPs)
chr8 (1-270)||(13231658-13231927)
chr8 (181-257)||(2623238-2623314)
chr8 (188-271)||(41456063-41456146)
chr8 (189-254)||(13231481-13231546)
chr8 (166-243)||(278966-279043)
chr8 (166-243)||(636809-636886)
chr8 (166-243)||(822612-822689)
chr8 (161-245)||(279733-279816)
chr8 (161-245)||(636036-636119)
chr8 (161-245)||(821839-821922)
chr8 (184-257)||(33231128-33231201)
[»] chr4 (10 HSPs)
chr4 (166-254)||(12007480-12007568)
chr4 (196-271)||(12007921-12007996)
chr4 (181-245)||(32641203-32641267)
chr4 (168-247)||(26305567-26305646)
chr4 (166-245)||(50072000-50072079)
chr4 (166-257)||(2486925-2487017)
chr4 (191-246)||(5474862-5474917)
chr4 (168-219)||(26439911-26439962)
chr4 (181-225)||(39484384-39484428)
chr4 (166-226)||(50071298-50071358)
[»] chr1 (11 HSPs)
chr1 (166-270)||(44634036-44634140)
chr1 (31-106)||(27575693-27575769)
chr1 (166-257)||(27573559-27573650)
chr1 (166-257)||(27702581-27702672)
chr1 (196-267)||(28652471-28652541)
chr1 (1-85)||(44633493-44633579)
chr1 (166-255)||(25476058-25476147)
chr1 (106-164)||(27575174-27575230)
chr1 (196-247)||(28651715-28651766)
chr1 (105-150)||(44633746-44633791)
chr1 (217-271)||(27576898-27576952)
[»] chr5 (8 HSPs)
chr5 (166-245)||(17115735-17115814)
chr5 (166-271)||(24153201-24153306)
chr5 (166-271)||(24153945-24154050)
chr5 (199-256)||(29108110-29108166)
chr5 (166-228)||(35145617-35145679)
chr5 (167-226)||(17116461-17116520)
chr5 (166-221)||(29108704-29108759)
chr5 (166-270)||(31079722-31079826)
[»] chr2 (7 HSPs)
chr2 (166-271)||(35063616-35063721)
chr2 (181-259)||(35064406-35064484)
chr2 (199-245)||(41714118-41714164)
chr2 (186-271)||(40056322-40056407)
chr2 (171-271)||(38356846-38356946)
chr2 (181-247)||(27060341-27060407)
chr2 (199-255)||(29453651-29453707)
[»] chr3 (2 HSPs)
chr3 (181-267)||(45005511-45005597)
chr3 (166-255)||(45146665-45146754)
[»] scaffold0301 (2 HSPs)
scaffold0301 (169-221)||(7857-7909)
scaffold0301 (26-61)||(8144-8179)
[»] chr7 (3 HSPs)
chr7 (181-234)||(21516209-21516262)
chr7 (181-234)||(21516432-21516485)
chr7 (181-234)||(21516655-21516708)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 13231658 - 13231927
Alignment:
Q  1 aaaatggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattgaaaaaactaaaagcatcgtaaacacaatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13231658 aaaatggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattgataaaactaaaagcatcgtaaacacaatca 13231757  T
Q  101 aacacattgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtacatgatgacaatgggaggtgtttgtgcatttgatgagaactaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13231758 aacacattgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtaaatgatgacaatgggaggtgtttgtgcatttgatgagaactaaaggg 13231857  T
Q  201 aggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 270  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13231858 aggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 13231927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 2623238 - 2623314
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 257  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||    
T  2623238 atttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacctta 2623314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 41456063 - 41456146
Alignment:
Q  188 gagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgt 271  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||  || |||| | | |||||||||||    
T  41456063 gagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgt 41456146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 13231546 - 13231481
Alignment:
Q  189 agaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 254  Q
    ||||||||||||||||||||| |||||||||||||| ||  | ||| |||||||||||||||||||    
T  13231546 agaactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcattttagtaaacc 13231481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 279043 - 278966
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 243  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  279043 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 278966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 636809 - 636886
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 243  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  636809 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 636886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 822612 - 822689
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 243  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  822612 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 822689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 279733 - 279816
Alignment:
Q  161 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  279733 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 279816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 636119 - 636036
Alignment:
Q  161 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  636119 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 821922 - 821839
Alignment:
Q  161 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  821922 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 33231201 - 33231128
Alignment:
Q  184 tgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 257  Q
    |||||| |||||||||||||||  || | |||||||||||||||| | ||  |||||||||||| || ||||||    
T  33231201 tgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacctta 33231128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 12007568 - 12007480
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 254  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||    
T  12007568 gggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaacc 12007480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 12007921 - 12007996
Alignment:
Q  196 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgt 271  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||| ||||    
T  12007921 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgt 12007996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 32641267 - 32641203
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32641267 attttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcattt 32641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 26305646 - 26305567
Alignment:
Q  168 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 247  Q
    ||||||||||| |||||||| | || | | ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  26305646 gaggtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcatttta 26305567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 50072000 - 50072079
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| || ||| ||||| ||||||||||    
T  50072000 gggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtcattt 50072079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 2486925 - 2487017
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaact-aaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 257  Q
    |||||||||||||   |||||||||| || |||||||  ||||||| |||||||||| |||| | |||||||||||| ||||| || ||||||    
T  2486925 gggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagacctta 2487017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 5474862 - 5474917
Alignment:
Q  191 aactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 246  Q
    |||| |||||||||| |||||||||||||||| ||||| | ||| |||||||||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcatttt 5474917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 26439962 - 26439911
Alignment:
Q  168 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaa 219  Q
    |||||||||||| |||||||||||| | ||||||| ||| ||||||||||||    
T  26439962 gaggtgtttgtgtatttgatgagaatttaagggagattattgtaagttttaa 26439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 39484428 - 39484384
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattag 225  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  39484428 atttcatgagaacttgagggaggtaagtgtaagttttaaaattag 39484384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 50071358 - 50071298
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 226  Q
    |||| ||||||||| ||||||||| | || ||||||||||||||| | |||||||| ||||    
T  50071358 gggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactaga 50071298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 44634036 - 44634140
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 265  Q
    |||||||| ||||  |||||||||||||| |||||||||| || |  ||||||||| |||||| ||||||| |||||||||||||||| ||| | |||||    
T  44634036 gggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggaggt 44634135  T
Q  266 gagtg 270  Q
    |||||    
T  44634136 gagtg 44634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 27575769 - 27575693
Alignment:
Q  31 ataaccatttcattgttgtcatcaaccaaatccatcattga-aaaaactaaaagcatcgtaaacacaatcaaacaca 106  Q
    |||| ||| |||||||||||||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||||    
T  27575769 ataatcatctcattgttgtcatcaaccgaatctatcatggataaaaactaaaagcatcgtaaacgcaatcaaacaca 27575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 27573650 - 27573559
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 257  Q
    |||| ||| |||| ||||||||||||| | |||||||||| ||||||||||||||| |||  | ||||||| | ||||||||||||||||||    
T  27573650 gggaagtgcttgtacatttgatgagaatttaagggaggttggtgtaagttttaaaactagtcggggtgtcaatatcattttagtaaacctta 27573559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 27702672 - 27702581
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 257  Q
    |||||||||||||  ||||||| | |||| |||||| |||||||||| ||||||||||| ||  | |||||||||||||||| |||||||||    
T  27702672 gggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaacctta 27702581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 28652471 - 28652541
Alignment:
Q  196 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 267  Q
    |||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||| ||| |||||||    
T  28652471 aagggaggttagtgtaagttttaaaaatagagg-ggtgtcaatgttattttagtaaacctcaagggaggtga 28652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 44633493 - 44633579
Alignment:
Q  1 aaaatggcaaaagaaccgcaaacacagttaataaccatttcattgttgtcatcaaccaaatccatcattg--aaaaaactaaaagca 85  Q
    ||||||||||||| |||| ||||  |||| |||||||||||||||| || ||||||||||| ||||||||  |||||||||||||||    
T  44633493 aaaatggcaaaagcaccgtaaacgaagttgataaccatttcattgtggtaatcaaccaaattcatcattgataaaaaactaaaagca 44633579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 25476058 - 25476147
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 255  Q
    |||||||||||||  |||| || | ||||  ||||||||| ||||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  25476058 gggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacct 25476147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 27575230 - 27575174
Alignment:
Q  106 attgcaaatcaaatttatgcataaaagtaactcaacacaattcaagtacatgatgacaa 164  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  27575230 attgcaaatcaaagttatgcataaaagtaactca--acaattcaagtaaatgatgacaa 27575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 28651766 - 28651715
Alignment:
Q  196 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 247  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  28651766 aagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcatttta 28651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 44633746 - 44633791
Alignment:
Q  105 cattgcaaatcaaatttatgcataaaagtaactcaacacaattcaa 150  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  44633746 cattgcaaatcaaagttatgcacaaaagtaactcaacacaattcaa 44633791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 27576898 - 27576952
Alignment:
Q  217 taaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgt 271  Q
    ||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||    
T  27576898 taaaactagaggggatgtcagtgtcattttagtaaaccttaggggaggtgtgtgt 27576952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 17115814 - 17115735
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| |||||  ||||| ||||||||||    
T  17115814 gggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcattt 17115735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 24153306 - 24153201
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 265  Q
    ||||||||||||| ||||| || |||||| ||||||||||||||| | |||||||| |||||  |||||| || |||||||| || |||| |||  ||||    
T  24153306 gggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaaggt 24153207  T
Q  266 gagtgt 271  Q
    ||||||    
T  24153206 gagtgt 24153201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 24153945 - 24154050
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 265  Q
    |||||||||||||  |||||||   |||| ||||||||||| ||| |||||||||| |||||| ||| | | |||||||||| ||||||||| | |||||    
T  24153945 gggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggt 24154044  T
Q  266 gagtgt 271  Q
    ||||||    
T  24154045 gagtgt 24154050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 29108166 - 29108110
Alignment:
Q  199 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctt 256  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  29108166 ggaggttagtgtaagttttaaaactagagg-ggtgttagtgtcatttttgtaaacctt 29108110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 35145679 - 35145617
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagg 228  Q
    |||| ||||||||  |||| |||||||||  ||||||||||||||||||||||||| ||||||    
T  35145679 gggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagg 35145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 17116461 - 17116520
Alignment:
Q  167 ggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 226  Q
    ||||||||||||| ||||||||| | || || |||||||||||| |||||||||| ||||    
T  17116461 ggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 17116520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 29108704 - 29108759
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 221  Q
    |||||||||||||  ||||| | | |||| ||||||||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaa 29108759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 31079722 - 31079826
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 265  Q
    |||| ||||||||  ||||| ||| |||  ||||||||||| |||   |||||||| ||||| |||||| |||| ||||||| ||||||||| | |||||    
T  31079722 gggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggaggt 31079821  T
Q  266 gagtg 270  Q
     ||||    
T  31079822 aagtg 31079826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 35063721 - 35063616
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 265  Q
    ||||| |||||||  |||| || | |||| ||||||||||  |||||||||||||| ||||||  ||||||||| ||||||| ||||||| ||| |||||    
T  35063721 gggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggt 35063622  T
Q  266 gagtgt 271  Q
    ||||||    
T  35063621 gagtgt 35063616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 35064406 - 35064484
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaag 259  Q
    |||||||||||| | |||||| |||||||| |||||||||| |||||| | ||| |||||||||||| ||||| |||||    
T  35064406 atttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaactttaag 35064484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 41714164 - 41714118
Alignment:
Q  199 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 245  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||    
T  41714164 ggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt 41714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 40056407 - 40056322
Alignment:
Q  186 atgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgt 271  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| | ||||| |||||||||||  ||||||| |   |||||||||||    
T  40056407 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgt 40056322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 38356946 - 38356846
Alignment:
Q  171 gtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 270  Q
    ||||||||  ||||||| | |||| ||||||||||| |||| ||||||||| |||||| |||||  ||||||| ||| || |||| | | ||||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T
Q  271 t 271  Q
    |    
T  38356846 t 38356846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 27060407 - 27060341
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 247  Q
    ||||||||||| || |||||| |||||| | |||||||||| |||||||| ||| ||||||| ||||    
T  27060407 atttgatgagagcttaagggatgttagtattagttttaaaactagaggagatgttagtgtcaattta 27060341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 29453651 - 29453707
Alignment:
Q  199 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 255  Q
    |||||||| ||||||||| |||| |||||||||||| ||||| |||||  |||||||    
T  29453651 ggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacct 29453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 45005511 - 45005597
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 267  Q
    |||||||||||||| ||||||| | ||||| |||||||||| ||| |||  ||| |||||||||||| ||||||| ||| |||||||    
T  45005511 atttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 45146665 - 45146754
Alignment:
Q  166 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 255  Q
    |||||||||||||  |||| || |||||  ||||||||||||||| ||||||||||||||| | | |||  ||||||||||| |||||||    
T  45146665 gggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacct 45146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  169 aggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 221  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||    
T  7909 aggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaa 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 8179 - 8144
Alignment:
Q  26 agttaataaccatttcattgttgtcatcaaccaaat 61  Q
    |||| |||||||||||||||||||||||||||||||    
T  8179 agttgataaccatttcattgttgtcatcaaccaaat 8144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21516262 - 21516209
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 234  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516262 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21516485 - 21516432
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 234  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516485 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21516708 - 21516655
Alignment:
Q  181 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 234  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516708 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University