View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_86 (Length: 287)
Name: NF4445_low_86
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_86 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| |
|
| [»] scaffold0365 (2 HSPs) |
| |
|
| [»] chr1 (12 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
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Alignment Details
Target: scaffold0400 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 12705 - 12989
Alignment:
| Q |
3 |
tcccattgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12705 |
tcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcac |
12804 |
T |
|
| Q |
103 |
atacaaacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaacc |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12805 |
atacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaacc |
12904 |
T |
|
| Q |
203 |
aattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12905 |
aattggagggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaa |
12989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 6423 - 6701
Alignment:
| Q |
9 |
tgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaa |
108 |
Q |
| |
|
||||||||| ||||| || |||||||| || |||| ||||| | ||| ||||||| |||||||||||| ||||||||||| ||||||||| | || || |
|
|
| T |
6423 |
tgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaa |
6522 |
T |
|
| Q |
109 |
acattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgg |
208 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| |||||||| |||| ||| ||| |||||| |||||| |||| | |||||||||||||||||||||| | |
|
|
| T |
6523 |
acattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttg |
6622 |
T |
|
| Q |
209 |
agggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| ||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6623 |
aaggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa |
6701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 13348 - 13632
Alignment:
| Q |
3 |
tcccattgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348 |
tcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcac |
13447 |
T |
|
| Q |
103 |
atacaaacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaacc |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13448 |
atacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaacc |
13547 |
T |
|
| Q |
203 |
aattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13548 |
aattggagggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaa |
13632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 7067 - 7345
Alignment:
| Q |
9 |
tgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaa |
108 |
Q |
| |
|
||||||||| ||||| || |||||||| || |||| ||||| | ||| ||||||| |||||||||||| ||||||||||| ||||||||| | || || |
|
|
| T |
7067 |
tgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaa |
7166 |
T |
|
| Q |
109 |
acattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgg |
208 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| |||||||| |||| ||| ||| |||||| |||||| |||| | |||||||||||||||||||||| | |
|
|
| T |
7167 |
acattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttg |
7266 |
T |
|
| Q |
209 |
agggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| ||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7267 |
aaggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa |
7345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 14532926 - 14532647
Alignment:
| Q |
8 |
ttgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacataca |
107 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| |||| ||||||| |||| || ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14532926 |
ttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagttaaatcacttaca |
14532827 |
T |
|
| Q |
108 |
aacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14532826 |
aacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
14532727 |
T |
|
| Q |
208 |
gagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||| ||||| | |||| ||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
14532726 |
gagggtccaattccaagcattacagccttccaaaaagctccaattgaagcacttagaaataacaaaggcttgtgtggtaa |
14532647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 14481918 - 14482195
Alignment:
| Q |
10 |
gagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaa |
109 |
Q |
| |
|
||||||||||||||| | ||| |||||||| |||| ||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| || ||| |
|
|
| T |
14481918 |
gagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaa |
14482017 |
T |
|
| Q |
110 |
cattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgga |
209 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||| || || || ||| ||||||||||||||| || ||| |||||||| |||||||| ||||| |
|
|
| T |
14482018 |
cattgaatctctcacataataatctttctggtaccattcccttcagatatggttagatgttaagcttgataactgtagatatatcgtacaaccagttgga |
14482117 |
T |
|
| Q |
210 |
gggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| |||||| ||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
14482118 |
gggtccgattccaagcattccagccttccagaaaactccaattgaagcactgagaaacaacaaagacttgtgtggtaa |
14482195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 14467736 - 14468013
Alignment:
| Q |
10 |
gagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaa |
109 |
Q |
| |
|
||||||||||||||| | ||| |||||||| |||| ||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| || ||| |
|
|
| T |
14467736 |
gagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaa |
14467835 |
T |
|
| Q |
110 |
cattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgga |
209 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||| || |||| | | | |||||||||||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
14467836 |
cattgaatctctcacataataatctttctggtaccattctcttcagctcagttgatatgttaagcttgacaactgtagatatatcgtacaaccagttgga |
14467935 |
T |
|
| Q |
210 |
gggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||| | |||||||||||||| | | ||||||| ||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
14467936 |
gggtccgattccaagcattccagccttccaacaggctccaattgaagcactgagaaacaacaaagacttgtgtggtaa |
14468013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 14503908 - 14504192
Alignment:
| Q |
3 |
tcccattgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcac |
102 |
Q |
| |
|
|||| |||||||||||| |||| | |||||||||||| |||| || |||||||||||| |||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
14503908 |
tcccgttgagtttggccgattaaatgttattgaagatcttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgttaaatcat |
14504007 |
T |
|
| Q |
103 |
atacaaacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaacc |
202 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||| ||||| || || || || |||| ||| | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14504008 |
ttagaaacattgaatctctcacataataatctgtctggtacgatcccctttagctctggtgatatgttaagcttgacaattattgatatatcatacaacc |
14504107 |
T |
|
| Q |
203 |
aattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| | ||||||||| ||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
14504108 |
aattggagggtccgattccaagcattccagccttccaacaagctccaattgaagcactgagaaacaacaaagacttgtgtggtaa |
14504192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 15002038 - 15002317
Alignment:
| Q |
8 |
ttgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacataca |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || | |
|
|
| T |
15002038 |
ttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttaga |
15002137 |
T |
|
| Q |
108 |
aacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
207 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
15002138 |
aacattgaatctctcacataacaatctctctggtaccattccctaaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttg |
15002237 |
T |
|
| Q |
208 |
gagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||| || |||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15002238 |
gagggtccgactccaaacattacagctttcgaaagagctccaattgaagcactgagaaataacaaaggcttgtgtggtaa |
15002317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 15036951 - 15037230
Alignment:
| Q |
8 |
ttgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacataca |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||| | |||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || | |
|
|
| T |
15036951 |
ttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttaga |
15037050 |
T |
|
| Q |
108 |
aacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
207 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| |||||||| || |||| | | | |||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
15037051 |
aacattgaatctctcacataacaatctctctggtaccattcccttaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttg |
15037150 |
T |
|
| Q |
208 |
gagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| || |||||||| ||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
15037151 |
gagggtccgattccaaacattacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaa |
15037230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 15032390 - 15032668
Alignment:
| Q |
9 |
tgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaa |
108 |
Q |
| |
|
|||||||| |||||| | ||||||||| || |||| |||||||| |||||| |||| ||||||||||||||||||||||| |||||||||| | || || |
|
|
| T |
15032390 |
tgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaa |
15032489 |
T |
|
| Q |
109 |
acattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgg |
208 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
15032490 |
acattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttgg |
15032589 |
T |
|
| Q |
209 |
agggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
||||||| ||||| |||||| |||| ||| ||||||||||| ||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
15032590 |
agggtccaattccaaacattacagctttcaaaaaagctccaattgaagcattgacaaataacaaaggcttatgtggtaa |
15032668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 15010931 - 15011210
Alignment:
| Q |
8 |
ttgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacataca |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||| || |||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || | |
|
|
| T |
15010931 |
ttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttaga |
15011030 |
T |
|
| Q |
108 |
aacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
207 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
15011031 |
aacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccaattg |
15011130 |
T |
|
| Q |
208 |
gagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||||||| || || |||| ||| || |||||||| ||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
15011131 |
gagggtccgattccaaatgttacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaa |
15011210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 15017046 - 15017325
Alignment:
| Q |
8 |
ttgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacataca |
107 |
Q |
| |
|
|||||||||||||||| | ||||||||| || |||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || | |
|
|
| T |
15017046 |
ttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttaga |
15017145 |
T |
|
| Q |
108 |
aacattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattg |
207 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| |||||||| | |||| | | | |||||||||||||||| ||||||| |||| |||||||| ||| |
|
|
| T |
15017146 |
aacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatgtatcttacaaccagttg |
15017245 |
T |
|
| Q |
208 |
gagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||| || |||||||| ||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
15017246 |
gagggtccgactccaaacattacagctttcggaagagctccaattgaagcattgacaaataacaagggcttgtgtggtaa |
15017325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 14522785 - 14522526
Alignment:
| Q |
28 |
gttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacaca |
127 |
Q |
| |
|
|||||||||||| |||| ||||| || ||||||||||| |||||||||||| ||||||||||||||||||||| | || ||||||||||||| ||||| | |
|
|
| T |
14522785 |
gttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatctctcacata |
14522686 |
T |
|
| Q |
128 |
ataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacat |
227 |
Q |
| |
|
||||||| | ||| | |||||| || |||| | | |||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
14522685 |
ataatctctatggtaacattcccttaagcttttttgatatgttaagtttgacaactgttgatatatcttacaaccggttggagggtccaattccaaacat |
14522586 |
T |
|
| Q |
228 |
tccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
| |||| |||| || ||||||| ||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
14522585 |
tacagcattccaaagagctccagttgaagcatttagaaataacaaaggcttgtgcggtaa |
14522526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 15040691 - 15040954
Alignment:
| Q |
9 |
tgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaa |
108 |
Q |
| |
|
|||| |||| || ||| ||||||||||| || |||| |||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| | || || |
|
|
| T |
15040691 |
tgagattggacagttaaaagttattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaa |
15040790 |
T |
|
| Q |
109 |
acattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattgg |
208 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||| ||| ||| |||||| | ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
15040791 |
acattgaatcttt------------tttgt---accattcccttgacctatggtgagatgtcaggcttgacaactgttgatatatcatgcaaccaattga |
15040875 |
T |
|
| Q |
209 |
agggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
||||||| ||||| || ||| || |||||||| |||| ||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
15040876 |
agggtccaattccaaaaatttcatccttcctacaagccccatttgaagcattaagaaataacaaaggcttgtgtggtaa |
15040954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 15025049 - 15025234
Alignment:
| Q |
9 |
tgagtttggccaattagaagttattgaagatattgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaa |
108 |
Q |
| |
|
|||||||| |||||| | ||||||||| || |||| |||||||| |||||| |||| ||||||||||||||||||||||| |||||||||| | || || |
|
|
| T |
15025049 |
tgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaa |
15025148 |
T |
|
| Q |
109 |
acattgaatctttcacacaataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatc |
194 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |
|
|
| T |
15025149 |
acattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatc |
15025234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 14605870 - 14606108
Alignment:
| Q |
49 |
agtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacacaataatctttctggaaccattc |
148 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||| |||||| || || | ||||||||||| | ||||| |||||||||||||| |||| |
|
|
| T |
14605870 |
agtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggttttattc |
14605969 |
T |
|
| Q |
149 |
ctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctcc |
248 |
Q |
| |
|
| | |||| || | ||||||| ||||| ||| ||||||||||||||| ||||||||||||||||| | || || |||| ||| ||| || ||| | |
|
|
| T |
14605970 |
cctctagcttcgatcagatgttcagcttaacatctgttgatatatcatataaccaattggagggtccactccccaatattcgagctttcagcaacgctac |
14606069 |
T |
|
| Q |
249 |
aactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
14606070 |
aattgaagtggtgagaaataataaaggcttgtgtggtaa |
14606108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 16025047 - 16025285
Alignment:
| Q |
49 |
agtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacacaataatctttctggaaccattc |
148 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||| |||||| || || | ||||||||||| | ||||| |||||||||||||| |||| |
|
|
| T |
16025047 |
agtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggttttattc |
16025146 |
T |
|
| Q |
149 |
ctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctcc |
248 |
Q |
| |
|
| | |||| || | ||||||| ||||| || ||||||||||||||| ||||||||||||||||| | || || |||| ||| ||| || ||| | |
|
|
| T |
16025147 |
cctctagcttcgatcagatgttcagcttaacgtctgttgatatatcatataaccaattggagggtccactccccaatattcgagctttcagcaacgctac |
16025246 |
T |
|
| Q |
249 |
aactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
16025247 |
aattgaagtggtgagaaataataaaggcttgtgtggtaa |
16025285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 16102851 - 16103090
Alignment:
| Q |
49 |
agtggaaattttttgaac-ggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacacaataatctttctggaaccatt |
147 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||| |||||| || || | ||||||||||| | ||||| |||||||||||||| ||| |
|
|
| T |
16102851 |
agtggaaatttttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggctttatt |
16102950 |
T |
|
| Q |
148 |
cctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctc |
247 |
Q |
| |
|
|| | |||| | | | ||||||||||||||| ||||||||||||||| ||||||||||||||||| | || ||||||| ||| ||| ||| ||| |
|
|
| T |
16102951 |
ccctctagctttgatcaaatgttaagcttgacatctgttgatatatcatataaccaattggagggtccactccccaacattcgagctttcagaaacgcta |
16103050 |
T |
|
| Q |
248 |
caactgaagcagtgagaaataacaaaggcttgtgtggtaa |
287 |
Q |
| |
|
||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
16103051 |
caatcgaagtgttgagaaataataaagacttgtgtggtaa |
16103090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 16172529 - 16172695
Alignment:
| Q |
49 |
agtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacacaataatctttctggaaccattc |
148 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||| |||||| || || | ||||||||||| | ||||| ||||||||||||||| |||| |
|
|
| T |
16172529 |
agtggaaattttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggatttattc |
16172628 |
T |
|
| Q |
149 |
ctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtcc |
215 |
Q |
| |
|
| | |||| || | ||||||| || || || ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16172629 |
cctctagcttcgatcagatgttcagtttaacgtctgttgatatatcatataaccaattggaaggtcc |
16172695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 37026857 - 37026919
Alignment:
| Q |
170 |
taagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccag |
232 |
Q |
| |
|
||||||||||||| ||||| ||||| || |||||||| |||||| | |||||||||| ||||| |
|
|
| T |
37026857 |
taagcttgacaatggttgacatatcttataaccaattagagggttcaattcctaacaatccag |
37026919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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