View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_93 (Length: 271)
Name: NF4445_low_93
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 16909843 - 16909596
Alignment:
| Q |
10 |
acatcatcattagtaggaaaaaataacattatcactacctcaattaaaacaaaatctaatttctaatggaatcctttggtgtcaaagttgaagaa---ac |
106 |
Q |
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| T |
16909843 |
acatcatcattagtaggaaaaaataacattatcactacctcaattaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaac |
16909744 |
T |
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| Q |
107 |
aatgttaaaagctgtttttcttccctttatatcaaaaa--gtcacctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgtta |
204 |
Q |
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| T |
16909743 |
aatgttaaaagctgtttttcttccctttatatcaaaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgtta |
16909644 |
T |
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| Q |
205 |
ccataatcaccacaccagcaaatgcagccatttttcaaacctcaatcg |
252 |
Q |
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| T |
16909643 |
ccataatcaccacaccagcaaatgcagccatttttcaaacctccatcg |
16909596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 14868870 - 14869072
Alignment:
| Q |
53 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtcaaagttgaag---aaacaatgttaaaagctgtttttcttccctttatatcaaaaagtcac |
149 |
Q |
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| T |
14868870 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcac |
14868969 |
T |
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| Q |
150 |
ctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctcaa |
249 |
Q |
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| T |
14868970 |
ctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaa |
14869069 |
T |
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| Q |
250 |
tcg |
252 |
Q |
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||| |
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| T |
14869070 |
tcg |
14869072 |
T |
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Back To:
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