View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_94 (Length: 263)
Name: NF4445_low_94
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_94 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 16909372 - 16909617
Alignment:
| Q |
18 |
aacactccatggataaaacatgtcagtgactatgaaatcgggtttcatgtcacgaaataattgtgtgaattgctcttggagaatggcaagtccctgatag |
117 |
Q |
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| T |
16909372 |
aacactccaaggataaaacatgtcagtgactatgaaatcaggtttcatgtcacgaaatagttgtgtgaattgctcttggagaatggcaagtccctgatag |
16909471 |
T |
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| Q |
118 |
attttggaaattatgtctttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgataatgtgagttctaatgg |
217 |
Q |
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| T |
16909472 |
attttggaaattatgtctttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgacaatgtgagttctaatgg |
16909571 |
T |
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| Q |
218 |
accgactgcgacttgaatcgcggtcgatggaggtttgaaaaatggc |
263 |
Q |
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| T |
16909572 |
accgaccgcgacttgaatcgtggtcgatggaggtttgaaaaatggc |
16909617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 14869296 - 14869051
Alignment:
| Q |
18 |
aacactccatggataaaacatgtcagtgactatgaaatcgggtttcatgtcacgaaataattgtgtgaattgctcttggagaatggcaagtccctgatag |
117 |
Q |
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| T |
14869296 |
aacactccaaggatagaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatag |
14869197 |
T |
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| Q |
118 |
attttggaaattatgtctttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgataatgtgagttctaatgg |
217 |
Q |
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| T |
14869196 |
attttcgaacgtatctcattaggagtgtcggcgttgaagctttccattcctcgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgg |
14869097 |
T |
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| Q |
218 |
accgactgcgacttgaatcgcggtcgatggaggtttgaaaaatggc |
263 |
Q |
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| T |
14869096 |
gacgaccgcggctagaatcgcggtcgattgaggtttgaaaaatggc |
14869051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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