View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_96 (Length: 260)
Name: NF4445_low_96
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_96 |
 | |
|
| [»] chr6 (12 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0038 (1 HSPs) |
| | |
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| [»] chr1 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26636219 - 26636457
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26636219 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26636318 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
26636319 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaaaa |
26636418 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
26636419 |
cttgctcaagcaatttataatttgatttctaatcaattt |
26636457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26742185 - 26742423
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26742185 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26742284 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
26742285 |
atctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagacaaaa |
26742384 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
26742385 |
cttgctcaagcaatttataatttgatttctaatcaattt |
26742423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26975524 - 26975762
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26975524 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
26975623 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
26975624 |
atctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaaca |
26975723 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26975724 |
cttgctcaagcagtttataatttgattgctaatcaattt |
26975762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26950316 - 26950554
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26950316 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26950415 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||| ||||| || | |||||||||||||| ||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
26950416 |
atctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaagacaaca |
26950515 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26950516 |
cttgctcaagcagtttataacttgattgctaatcaattt |
26950554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26959699 - 26959937
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26959699 |
atgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
26959798 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||| || | |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26959799 |
atctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaagacaaca |
26959898 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
||| |||||||||||||||||| ||||| | |||||||| |
|
|
| T |
26959899 |
ctttctcaagcagtttataattcgattgttcatcaattt |
26959937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 25074443 - 25074678
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||| || |
|
|
| T |
25074443 |
atgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtcttcg |
25074542 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||| | || ||||||| ||||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
25074543 |
atctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaagacaact |
25074639 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25074640 |
cttgctcaagcaatttataatttgattgctaatcaattt |
25074678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 26849285 - 26849523
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||| || |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
26849285 |
atgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttggacttaa |
26849384 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||| |||| |||||||||||| | |||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
26849385 |
atctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaaacaaca |
26849484 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
26849485 |
cttgctcaagcagtttataattcgattgctgatcaattt |
26849523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 39 - 260
Target Start/End: Complemental strand, 27664797 - 27664576
Alignment:
| Q |
39 |
tttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaaatctcgaatatcaaaag |
138 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||||||| ||| |
|
|
| T |
27664797 |
tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag |
27664698 |
T |
|
| Q |
139 |
tgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaacacttgctcaagcagttta |
238 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
27664697 |
tgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaagacaacacttgctgaagcagttta |
27664598 |
T |
|
| Q |
239 |
taatttgattgctaatcaattt |
260 |
Q |
| |
|
||||| |||| |||||||||| |
|
|
| T |
27664597 |
taattcaattgttaatcaattt |
27664576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 31288878 - 31288986
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31288878 |
atgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
31288977 |
T |
|
| Q |
122 |
atctcgaat |
130 |
Q |
| |
|
||||||||| |
|
|
| T |
31288978 |
atctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 31288986 - 31289067
Alignment:
| Q |
167 |
tgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaacacttgctcaagcagtttataatttgatt |
248 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| ||| || ||||||||| |||||||| ||||||||| |||| |
|
|
| T |
31288986 |
tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacactttctcaagcaatttataattcgatt |
31289067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 28227573 - 28227618
Alignment:
| Q |
70 |
acaagatcaaccacgttcctttacatgttgctgattaccttgttgg |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||| |||||| |
|
|
| T |
28227573 |
acaagatcaatcatgttcctttacatgttgccgattaccctgttgg |
28227618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 29843402 - 29843358
Alignment:
| Q |
216 |
acaacacttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| || ||||| |
|
|
| T |
29843402 |
acaacacttgctcgagcaatttataatttgattgctgataaattt |
29843358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 17992824 - 17992586
Alignment:
| Q |
22 |
atgaatatgaacgtgattttattgaaaacatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||| |
|
|
| T |
17992824 |
atgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaa |
17992725 |
T |
|
| Q |
122 |
atctcgaatatcaaaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccggaggaatgggcaagacaaca |
221 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||| | || |||||| ||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
17992724 |
atctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaagacaact |
17992625 |
T |
|
| Q |
222 |
cttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17992624 |
cttgctcaagcagtttataatttggttgctaatcaattt |
17992586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 3280411 - 3280470
Alignment:
| Q |
201 |
ggaggaatgggcaagacaacacttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
3280411 |
ggaggaatgggtaagacaactcttgcaagagcagtttataatttcattgctaatcaattt |
3280470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 16691619 - 16691678
Alignment:
| Q |
201 |
ggaggaatgggcaagacaacacttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
|||||||| || || ||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
16691619 |
ggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaattt |
16691678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 28071 - 28116
Alignment:
| Q |
70 |
acaagatcaaccacgttcctttacatgttgctgattaccttgttgg |
115 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||| |||||| |
|
|
| T |
28071 |
acaagatcaatcatgttcctttacatgttgccgattaccctgttgg |
28116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 5090521 - 5090476
Alignment:
| Q |
63 |
gtctcctacaagatcaaccacgttcctttacatgttgctgattacc |
108 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5090521 |
gtctccaacaagatcaatcacactcctttacatgttgctgattacc |
5090476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 26136655 - 26136699
Alignment:
| Q |
216 |
acaacacttgctcaagcagtttataatttgattgctaatcaattt |
260 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
26136655 |
acaacacttactcgagcagtttataatttgattgcggatcaattt |
26136699 |
T |
|
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