View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_97 (Length: 258)
Name: NF4445_low_97
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 38127032 - 38126804
Alignment:
| Q |
13 |
tgaaatggtaaataaagaaaacatgtctgaatgtgtgattaaagtttttaacttttcttgtgtgattggagttgaggaggaaaaatagtaattagatcac |
112 |
Q |
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| T |
38127032 |
tgaaatggtaaataaagaaaacatgtctgaatgtgtgattaaagtttttaacttttcttgtgtgattggagttgaggaggaaaaatagtaattagatcac |
38126933 |
T |
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| Q |
113 |
tataggaggggtaaaacacgcaacctcaatacttcttagttcttaacgaaggtcaggtcacaccataataaaaaatgaagggcacacataaaggagggtg |
212 |
Q |
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| T |
38126932 |
tataggaggggtaaaacacgcaacctcaatacttcttagttcttaacgaaggtcaggtcacaccataataaaaaatgaagggcacacataaaggagggtg |
38126833 |
T |
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| Q |
213 |
catgtaactgttaaaggctcaaaagttat |
241 |
Q |
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| T |
38126832 |
catgtaactgttaaaggctcaaaagttat |
38126804 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 17787207 - 17787255
Alignment:
| Q |
50 |
attaaagtttttaacttttcttgtgtgattggagttgaggaggaaaaat |
98 |
Q |
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| T |
17787207 |
attaaagtttttaactttgcttttgtgattagagtttaagaggaaaaat |
17787255 |
T |
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