View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446-Insertion-1 (Length: 1028)
Name: NF4446-Insertion-1
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 479 - 1022
Target Start/End: Original strand, 28772631 - 28773180
Alignment:
| Q |
479 |
caaagaaaagtaaattatatcataccactatgtacttgttgtcgaacccactgcgaagtttctctttttctaatttctcggtttcttcagcactcttttt |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28772631 |
caaagaaaagtaaattatatcataccactatgtacttgttgtcgaacccactgcgaagtttctctttttctaatttctcggtttcttcagcattcttttt |
28772730 |
T |
|
| Q |
579 |
tacatcaaactgcagaaaactagtcgttagttga-tgaataaagctctataagtactatttgaaacaaaactaagaaataacttgtccaatagttgaaat |
677 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28772731 |
tacatcaaactgcagaaaactagtagttagttaaatgaataaagctctataagtactatttgaaacaaaactaagaaataacttgtccaatagttgaaat |
28772830 |
T |
|
| Q |
678 |
tgaagttgataacnnnnnnngtcaatgtgcatattctagaaacaaatcttctgccgagaaatctcagtcacttatttgtttatgtcggatgatatcaaag |
777 |
Q |
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| T |
28772831 |
tgaagttgataactttttttatcaatgtgcatattctagaaacaaatcttctgccgagaaatctcagtcacttatttgtttatgtcggatgatatcaaag |
28772930 |
T |
|
| Q |
778 |
ccattaacagagaatagaaggatgaggatttccacccaataaaaacctcgccagagaagatctgttcccgcatattactagaaattgaagcacgttttac |
877 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28772931 |
ccattaacagagaatagaagggtgaggatttccacccaataaaaacctcgccagagaagatctgttcccgcatattactagaaattgaagcacgttttac |
28773030 |
T |
|
| Q |
878 |
agagtttaacggtcatacattgtcattgtaaaaacagttgtacgctgacgttcaatgagaggctaaca-ttttccatgag-ttcaaaaataccat-cag- |
973 |
Q |
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| T |
28773031 |
agagtttaacggtcatacattgtcattgt-aaaacagttgtacgctgacgttcaatgagaggctaacatttttccatgagtttcaaaataaccatccaga |
28773129 |
T |
|
| Q |
974 |
agggggtgtgacatggcaaagtagt-gattctcaatg-atattagtttaaa |
1022 |
Q |
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|||||| |||||||||||||||||| |||||||| || |||| |||||||| |
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| T |
28773130 |
agggggggtgacatggcaaagtagtggattctcattgaatataagtttaaa |
28773180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 159 - 482
Target Start/End: Original strand, 28772280 - 28772606
Alignment:
| Q |
159 |
aaaataaaataaaatagcaagctaaattgatgctgcaaatgtcgaatcttccacttgcaacatcgcattgttaaaacatggatgatccattactgagcaa |
258 |
Q |
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| T |
28772280 |
aaaataaaataaaatagcaagctaaattgatgctgcaaatgtcgaatcttccacttgcaacatcgcattgttaaaacatggatgatccattactgagcaa |
28772379 |
T |
|
| Q |
259 |
acaaggataaaatattatggcgttgggacatgtagaattctacttatcaaagtgatatagtcttgaaaacgaaagaattttctgtgcaagtttggtacct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28772380 |
acaaggataaaatattatggcgttgggacatgtagaattctacttatcaaagtgatatagtcttgaaaacgaaagaattttctgtgcaagtttggtacct |
28772479 |
T |
|
| Q |
359 |
gccagaaccacggtgagccaacatgattttccaaaaactacatag---cgtagcttttgcaaaatatgatgactcgccttctgataccagaaatagaatt |
455 |
Q |
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| T |
28772480 |
gccagaaccacggtgagctaacatgattttccaaaaactacatagcgtcgtagcttttgcaaaatatgatgactcaccctctgataccagaaatagaatt |
28772579 |
T |
|
| Q |
456 |
gaaggtggaagtttatggccactcaaa |
482 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28772580 |
gaaggtggaagtttatggccactcaaa |
28772606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 28772093 - 28772254
Alignment:
| Q |
7 |
agtaattgggcataagtataccgcattggtatcacattagggcatggattggtaacacgttagagtgtggaaacaacttgannnnnnnnnnnngaaagca |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28772093 |
agtaattgggcataagtataccgcattggtatcacattagggcatggattggtaacacgttagagtgtggaaacaacttgattttttattttttaaagca |
28772192 |
T |
|
| Q |
107 |
ttcaatcgattcagg----gtttaaaaattgattcttttaaatgttgaatatagtcaaaata |
164 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28772193 |
ttcaatcgattcatgcatagtttaaaaattgattcttttaaatgttgaatatagtcaaaata |
28772254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 501 - 688
Target Start/End: Original strand, 28765148 - 28765335
Alignment:
| Q |
501 |
taccactatgtacttgttgtcgaacccactgcgaagtttctctttttctaatttctcggtttcttcagcactcttttttacatcaaactgcagaaaacta |
600 |
Q |
| |
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||||||||||||||||||||| |||| | ||||||||||| |||| |||||||| | |||||||| ||||||| | ||||||||||||||||||||| |
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| T |
28765148 |
taccactatgtacttgttgtccggcccatcgagaagtttctctgtttcgaatttctctgcttcttcagaactctttctcacatcaaactgcagaaaacta |
28765247 |
T |
|
| Q |
601 |
gtcgttagttgatgaataaagctctataagtactatttgaaacaaaactaagaaataacttgtccaatagttgaaattgaagttgata |
688 |
Q |
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| ||| ||| ||| ||||||| ||||| ||||||||| ||||||| || ||||||||||| |||||||||||||| || |||||| |
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| T |
28765248 |
ttagttggttaatggctaaagctatataactactatttggaacaaaattatgaaataacttgctcaatagttgaaatttaatttgata |
28765335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 678
Target Start/End: Original strand, 28747293 - 28747385
Alignment:
| Q |
588 |
ctgcagaaaactagtcgttagttgatgaataaagctctat--aagtactatttgaaacaaaactaagaaataacttgtccaatagttgaaatt |
678 |
Q |
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||||||||||||| | ||| ||| ||| ||||||||||| || ||||||||| ||||||| || ||||||||||| ||||||| |||||| |
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| T |
28747293 |
ctgcagaaaactattggttggttaatggctaaagctctatttaactactatttggaacaaaattatgaaataacttgctcaatagtagaaatt |
28747385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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