View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4446-Insertion-3 (Length: 931)
Name: NF4446-Insertion-3
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446-Insertion-3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 874; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 874; E-Value: 0
Query Start/End: Original strand, 7 - 931
Target Start/End: Complemental strand, 8458179 - 8457254
Alignment:
| Q |
7 |
attcaatacctgatatacatgagactgcatgcgcatcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgc |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458179 |
attcaatacctgatatacatgaaactgcatgcgtatcaaagtttgtacaaagaaattaacttattgactagcaaaaaagggtaagatctaactgcaatgc |
8458080 |
T |
|
| Q |
107 |
ttagttttcaaaccttcatttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458079 |
ttagttttcaaaccttcatttaacatacttaggacaaaatgttgggtacctggagaattcccttcgttgtgaagtcaaatgcagttgaaagctgtccagt |
8457980 |
T |
|
| Q |
207 |
gccatcaatccaattgattattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457979 |
gccatcaatccaattgattattcgttgtctatggttatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaa |
8457880 |
T |
|
| Q |
307 |
tgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457879 |
tgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtag |
8457780 |
T |
|
| Q |
407 |
ttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattctttcacatattttggtgaatatctaccaatgacagaattga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8457779 |
ttgcatgtatcccaatactccccaacagataacattggctttggtccttcaatatattctttcacatattttggtgaatatctacaaatgacagaattga |
8457680 |
T |
|
| Q |
507 |
ggtataaaactatatataactcctgaatatataaagcaagaagccaaaggaaaaccctcaatattctaaaggtgtagtgtagcacatcttacccttttgc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457679 |
ggtataaaactatatataactcctgaatatataaagcaagaagccaaaggaaaaccctcaatattctaaaggtgtagtgtagcacatcttacccttttgc |
8457580 |
T |
|
| Q |
607 |
ataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457579 |
ataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattg |
8457480 |
T |
|
| Q |
707 |
ggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaataaaatga |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457479 |
ggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaataaaatga |
8457380 |
T |
|
| Q |
807 |
aaatatatttgaatgtatcatatatgttgccagtccaccagtagatgatgttacagcacgttcatcccacggtaatgg-atttcatcaaaacgattatac |
905 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
8457379 |
aaatatatttggatgtatcatatatgttaccagtccaccagtagatgatgttacagcacgttcatcccacggtaatggaattccatcaaaacgattatac |
8457280 |
T |
|
| Q |
906 |
atccctccatgtccttgggtggtacc |
931 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8457279 |
atccctccatgtccttgggtggtacc |
8457254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 124 - 781
Target Start/End: Original strand, 6827278 - 6827925
Alignment:
| Q |
124 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
6827278 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
6827377 |
T |
|
| Q |
224 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttag |
323 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
6827378 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttag |
6827477 |
T |
|
| Q |
324 |
taaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaata |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
6827478 |
taaccaaaaagtattcatttatttcatgaatgagaattttaagca---taccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaata |
6827574 |
T |
|
| Q |
424 |
ctccccaacagataacagtggctttgctccttcaatatattctttcacatattttggtgaatatctaccaatgacagaattgag--gtataaaactatat |
521 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |
|
|
| T |
6827575 |
ctccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttggtgaatagctacaaatgacagaattgagaggtgtaaaactatag |
6827674 |
T |
|
| Q |
522 |
ataactcctgaatatataaagcaagaagccaaa-ggaaaaccctcaatattctaaaggtgtagtgtagcacatcttacccttttgcataatcaaaacgaa |
620 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
6827675 |
----ctcctgaatatataaagtaagaagccaaaaggaaaacaatcaattttcaaaaggtgtag-----cacatcttacccttt-gcataatcaaaacgaa |
6827764 |
T |
|
| Q |
621 |
aatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaa |
720 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6827765 |
aatcctgaaagcccacattatggcgaagccactgaagccatcctatgatatcctttctcacacaatcttgagtgtggtcgatattgggaaacccgtggaa |
6827864 |
T |
|
| Q |
721 |
aatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaaca |
781 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||| |||||||||| || |||||||| |
|
|
| T |
6827865 |
aatggccccagtgtttcgattaaccagaaatgaacaacgcaaagatacagcaagaggaaca |
6827925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 124 - 742
Target Start/End: Complemental strand, 9822866 - 9822258
Alignment:
| Q |
124 |
atttaacatacttaggacaaaatgttgggtacctggagaattccctttgttgtgaagtcaaatgcagttgaaagctgtccagtgccatcaatccaattga |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
9822866 |
atttaacatacttaggacaaaatgttaggtacctggagaattcccttggttgtgaagtcaaatccagttgaaagatgtccactgccatcaatccatttga |
9822767 |
T |
|
| Q |
224 |
ttattcgttgtctatgactatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttag |
323 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
9822766 |
ttattcgttgcctatggctatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttag |
9822667 |
T |
|
| Q |
324 |
taaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaata |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9822666 |
taaccaaaaagtattcatttatttcatgaatgagaattttaagca---taccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaata |
9822570 |
T |
|
| Q |
424 |
ctccccaacagataacagtggctttgctccttcaatatattctttcacatattttggtgaatatctaccaatgacagaattgag--gtataaaactatat |
521 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |
|
|
| T |
9822569 |
ctccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttggtgaatagctacaaatgacagaattgagaggtgtaaaactatag |
9822470 |
T |
|
| Q |
522 |
ataactcctgaatatataaagcaagaagccaaa-ggaaaaccctcaatattctaaaggtgtagtgtagcacatcttacccttttgcataatcaaaacgaa |
620 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9822469 |
----ctcctgaatatataaagtaagaagccaaaaggaaaacaatcaattttcaaaaggtgtag-----cacatcttacccttt-gcataatcaaaacgaa |
9822380 |
T |
|
| Q |
621 |
aatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaa |
720 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
9822379 |
aatcctgaaagcccacattatggcaaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtgtggtcgatatggggaaacccgtggaa |
9822280 |
T |
|
| Q |
721 |
aatggccccagtgtttcgatta |
742 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9822279 |
aatggccccagtgtttcgatta |
9822258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 267 - 781
Target Start/End: Original strand, 27964065 - 27964568
Alignment:
| Q |
267 |
gagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaag |
366 |
Q |
| |
|
||||| |||||| |||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
27964065 |
gagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttattc-atgaatgagaattttaag |
27964163 |
T |
|
| Q |
367 |
cagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattct |
466 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27964164 |
ca---taccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggctttgctccttcaatatactct |
27964260 |
T |
|
| Q |
467 |
ttcacatattttggtgaatatctaccaatgacagaattgag--gtataaaactatatataactcctgaatatataaagcaagaagccaaa-ggaaaaccc |
563 |
Q |
| |
|
|| |||||||| |||||||| |||| ||||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27964261 |
ttaacatatttaggtgaatagctacaaatgacagaattgagaggtataaaattatag----ctcctgaatatataaagtaagaagccaaaaggaaaacaa |
27964356 |
T |
|
| Q |
564 |
tcaatattctaaaggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcc |
663 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27964357 |
tcaatattcaaaaggtgtag-----cacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcgaagccactgaagccatcc |
27964450 |
T |
|
| Q |
664 |
tatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaa |
763 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
27964451 |
tatgatatcctttctcacacaatcttgagtgtggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaacctgaaatgaacaacgcaaa |
27964550 |
T |
|
| Q |
764 |
gatacaacaggaggaaca |
781 |
Q |
| |
|
|||| | || |||||||| |
|
|
| T |
27964551 |
gatatagcaagaggaaca |
27964568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 18361265 - 18361345
Alignment:
| Q |
125 |
tttaacatacttaggacaaaatgttgggtacctggaga--attccctttgttgtgaagtcaaatgcagttgaaagctgtcc |
203 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||| |
|
|
| T |
18361265 |
tttaacatacttaagacaaaatgctgggtacctggagatcattcccttggctgtgaagtcatatgcagttgaaagttgtcc |
18361345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 18361362 - 18361425
Alignment:
| Q |
285 |
aaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttg |
348 |
Q |
| |
|
||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
18361362 |
aaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttatttg |
18361425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University