View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4446-Insertion-4 (Length: 685)
Name: NF4446-Insertion-4
Description: NF4446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4446-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 42664612 - 42665062
Alignment:
| Q |
8 |
gaaatatcggagaatgaaactttgaagtgcaatattgatgcaacttttgtccatcaacataacaattttgattcaggaatgtgtatcgatatcgaaagag |
107 |
Q |
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| T |
42664612 |
gaaaaatcggagaatgaaactttgaagtgcaatattgatgcaacttttgtccatcaacataacaattttgatacaggaatgtgtatccatatcgaaagag |
42664711 |
T |
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| Q |
108 |
aagaatctatccgagcaaagacattacataaacaacaatgtctatctccaaaagaagttgaatcaacgagtttcacaaacaccataaattggttacaaga |
207 |
Q |
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| T |
42664712 |
aagaatctatccgagcaaagacattacataaacaacaat------ctccaaaagaagctgaatcaacgagtttcgcaaacatcataaattggttacaaga |
42664805 |
T |
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| Q |
208 |
ataaggttttcgacgatttacaatcaaattaaattgcaaagcagtaaatcacatcaccagacattaatactgtattactgagattgactcgattttacat |
307 |
Q |
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| T |
42664806 |
ataaagttttcgacgatttacgaccaaactaaattgcaaagcagtaaatcacatcaccagacactaatactatattactaagattgactcgattttacat |
42664905 |
T |
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| Q |
308 |
tattgcaagacttccttaaatattttatgatctataagtataagataagataagttttatagacaaataaacctcgttgttccaacattatccttgatga |
407 |
Q |
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| T |
42664906 |
tattgtaagacttccttgaatattttatgaactataagtataaggtaagataagttttatagacaaataaaccttgttgttccaacattatccttgatga |
42665005 |
T |
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| Q |
408 |
cacaaaataagactctttgttacttccgagtttcaacaacaaaaattcttttgaaaa |
464 |
Q |
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| T |
42665006 |
cacaaaataagactgtttgttactttcgagtttcaacaacaaaaattcttttgaaaa |
42665062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 537 - 677
Target Start/End: Original strand, 42666196 - 42666336
Alignment:
| Q |
537 |
gtgtgtcaatggtggaagcannnnnnngggtcgaagcatattcaactttcattttcattcattcaacaaatgaatcgagttaggnnnnnnngtttagagt |
636 |
Q |
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| T |
42666196 |
gtgtgtcaatggtggaagcatttttttcggtcgaagcatattcaactttcattttcattcattcaccaaatgaatcgagttaggtttttttgtttagagt |
42666295 |
T |
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| Q |
637 |
gagtgaaactactcaagtcaaaattcttttcttcttcttct |
677 |
Q |
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| T |
42666296 |
gagtgagactactcaagtcaaaattcttttcttcttcttct |
42666336 |
T |
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